View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16988_low_5 (Length: 461)
Name: NF16988_low_5
Description: NF16988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16988_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 16 - 443
Target Start/End: Original strand, 6577853 - 6578273
Alignment:
| Q |
16 |
atgcaggtgaattacgaacagagaagagccaacgatataattaattgatgagggtgggttactgcagatgtgataaagagaaatgcagagaaaatcaaag |
115 |
Q |
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| T |
6577853 |
atgcaggtaaattacgaacagagaagagccaacgataaaatt----gatgagggtgggttactgcagatgtgataaagagaaatgcagagaaaatcaaag |
6577948 |
T |
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| Q |
116 |
aaccgctaagaaatcaaggaacccannnnnnnaattagagaaataactcatgtttaccatgtagaaaaagcaagtatttaacttgttgagctttgatagt |
215 |
Q |
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| T |
6577949 |
aaccgctaagaaatcaaggaacccatttttttaattagagaaataactcatgtttaccatatagaaagagcaagtatttaacttgttgagctttgatagt |
6578048 |
T |
|
| Q |
216 |
gtgttttagcagaattctttttgatgattattaaaataggtttccaattcgatgcacagtgaagaagaagaaggtgacttttcatgtacaaagtttatga |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
6578049 |
gtgttttagcagaattctttttgatgattattaaaataggtttccaattcgatgcacagtgaag---aagaaggtgacttttcatgtacaaagtttatga |
6578145 |
T |
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| Q |
316 |
aaagtgatgaaaaatgatgatgtggaccaatgaatgaaagagtgtctaagagagagtgcaagagagattgtccttagcatccctcgtggctgccttgttg |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6578146 |
aaagtgatgaaaaatgatgatgtggaccaatgaatgaaaaagtgtctaagagagagtgcaagagagattgtccttagcatccctcgtggctgccttgttg |
6578245 |
T |
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| Q |
416 |
ttgagatcaatctctagctgcttcatct |
443 |
Q |
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| T |
6578246 |
ttgagatcaatctctagctgcttcatct |
6578273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 325 - 400
Target Start/End: Complemental strand, 42202086 - 42202011
Alignment:
| Q |
325 |
aaaaatgatgatgtggaccaatgaatgaaagagtgtctaagagagagtgcaagagagattgtccttagcatccctc |
400 |
Q |
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| T |
42202086 |
aaaaatgatgatgtggaccaatgaataaaagagtgtctaagagaaagtgtaagatatattatcgttagcatccctc |
42202011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 400
Target Start/End: Original strand, 31305830 - 31305880
Alignment:
| Q |
350 |
tgaaagagtgtctaagagagagtgcaagagagattgtccttagcatccctc |
400 |
Q |
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| T |
31305830 |
tgaaagagtgtttaagagagagtgcgagagaggttgtccttagcattcctc |
31305880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 400
Target Start/End: Original strand, 42641467 - 42641504
Alignment:
| Q |
363 |
aagagagagtgcaagagagattgtccttagcatccctc |
400 |
Q |
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| T |
42641467 |
aagagagagtgtaagagtgattgtccttagcatccctc |
42641504 |
T |
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