View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16988_low_6 (Length: 427)
Name: NF16988_low_6
Description: NF16988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16988_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 6 - 414
Target Start/End: Original strand, 41990140 - 41990549
Alignment:
| Q |
6 |
gcaggcaatggtgttgtgaatcacgaaaacttcacgtgcaattctgacttacttgtttactacaaccgaccaannnnnnnatgaatttcaaaatatacta |
105 |
Q |
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| T |
41990140 |
gcaggcaatggtgttgtgaatcacgaaaacttcacgtgcaattctgacttacttgtttactacaaccgaccaatttttttatgaatttcaaaatatacta |
41990239 |
T |
|
| Q |
106 |
ccaaacgttggaccactttgaatatagagcatttcagacattaatgttactgttaccagctctgtctctaatgtttttactccccacactttcattttgt |
205 |
Q |
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| T |
41990240 |
ccaaacgttggaccactttgaatatagagcatttcagacattaatgttattgttaccagctctgtctctaatgtttttactccccacactttcattttgt |
41990339 |
T |
|
| Q |
206 |
ctcactctttcaattataaacaa-gtgcaccgatagctcaaatgcataagttaattaagtgattctcccttgaattttactactaatgttgtgtagagac |
304 |
Q |
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| T |
41990340 |
ctcactctttcaattataaacaaagtgcaccgatagctcaaatgcataagttaattaagtgattctcccttgaattttactactaatgttgtgtagagac |
41990439 |
T |
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| Q |
305 |
aattgcttaagttaactacatgtcagagtaataaaagactgaaaaagttacagcatgcttaactcaaaaaagaatgaactacattgaagctataaaattg |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41990440 |
aattgcttaagttaactacatgtcagagtaataaaagactgaaaaagttacagcatgcttaactcaaaaaagaatgaactacattgaagctataaaattg |
41990539 |
T |
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| Q |
405 |
ggaaaaaatt |
414 |
Q |
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| T |
41990540 |
ggaaaaaatt |
41990549 |
T |
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