View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16989_high_5 (Length: 337)
Name: NF16989_high_5
Description: NF16989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16989_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 121; Significance: 6e-62; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 31039294 - 31039438
Alignment:
| Q |
1 |
tcatcatcaccaaaatgtcaccaccacacaaaaaacgcataaacaatccttattctcaatccaccaccaacaaccaccaccttgctttctcagcagcaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
31039294 |
tcatcatcaccaaaatgtcaccaccacacaaaaaacacataaacaatccttactctcaatccaccaccaacaaccaccacctcgctttctcaacagcaac |
31039393 |
T |
|
| Q |
101 |
cacaaaacaaatctagatctagatccaaatccgggtctaaaaact |
145 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
31039394 |
cacaaaacggatctagatctagatccaaatccgggtctaaaaact |
31039438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 209 - 318
Target Start/End: Original strand, 31039502 - 31039611
Alignment:
| Q |
209 |
gaaacgaaaaccagcacatccatggaaaccagccgccgggagaataactaggagtcaccggcgcgagctgttgctacaacctcctaaaaccacactggtg |
308 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
31039502 |
gaaacgaaaaccagcacatccatgaaaaccagccgccaggagaataactaggagtcaccggtgcgagctgttgctacaacctcctaaaatcacactggta |
31039601 |
T |
|
| Q |
309 |
caaaggtcaa |
318 |
Q |
| |
|
|||||||||| |
|
|
| T |
31039602 |
caaaggtcaa |
31039611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 25143197 - 25143340
Alignment:
| Q |
1 |
tcatcatcaccaaaatgtcaccaccacacaaaaaacgcataaacaatccttattctcaatccaccaccaacaaccaccaccttgctttctcagcagcaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
25143197 |
tcatcatcaccaaaatgtcaccaccacacaaaaaacacataaacaatcct-actctcaatccaccaccaacaaccaccacctcactttctcagcagcaac |
25143295 |
T |
|
| Q |
101 |
cacaaaacaaatctagatctagatccaaatccgggtctaaaaact |
145 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
25143296 |
cacaaaacggatctagatctagatccaaatccgggtctaaaaact |
25143340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 209 - 318
Target Start/End: Original strand, 25143404 - 25143513
Alignment:
| Q |
209 |
gaaacgaaaaccagcacatccatggaaaccagccgccgggagaataactaggagtcaccggcgcgagctgttgctacaacctcctaaaaccacactggtg |
308 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25143404 |
gaaacgaaaaccaacacatccatgaaaaccagccgacgggagaataactaggagtcaccagcgcgagctgttgctacaacctcctaaaaccacactggtg |
25143503 |
T |
|
| Q |
309 |
caaaggtcaa |
318 |
Q |
| |
|
|||||||||| |
|
|
| T |
25143504 |
caaaggtcaa |
25143513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 99; Significance: 8e-49; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 28164672 - 28164531
Alignment:
| Q |
1 |
tcatcatcaccaaaatgtcaccaccacacaaaaaacgcataaacaatccttattctcaatccaccaccaacaaccaccaccttgctttctcagcagcaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||| ||||||||| ||||||||| ||||||| |
|
|
| T |
28164672 |
tcatcatcaccaaaatgtcaccaccacacaaaaaacacataaacaatcct-actctcaatccaccaccaacatccaccacctcgctttctcaacagcaac |
28164574 |
T |
|
| Q |
101 |
cacaaaacaaatctagatctagatccaaatccgggtctaaaaa |
143 |
Q |
| |
|
|||||||| |||||||||||||| ||||| |||||||||||| |
|
|
| T |
28164573 |
cacaaaacggatctagatctagattcaaattcgggtctaaaaa |
28164531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 145
Target Start/End: Original strand, 27262342 - 27262427
Alignment:
| Q |
62 |
caccaccaacaaccac--caccttgctttctcagcagcaaccacaaaacaaatctagatctagatccaaatccgggtctaaaaact |
145 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||| | | ||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
27262342 |
caccaccaacaaccacaccacctatctttctcagcaaccatcacaaaagggatctagatctagatccaaatccgaatctaaaaact |
27262427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 27262300 - 27262333
Alignment:
| Q |
1 |
tcatcatcaccaaaatgtcaccaccacacaaaaa |
34 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
27262300 |
tcatcatcaccaaaatgtcaccaccacacaaaaa |
27262333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University