View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16989_low_1 (Length: 803)
Name: NF16989_low_1
Description: NF16989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16989_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 652; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 652; E-Value: 0
Query Start/End: Original strand, 8 - 787
Target Start/End: Original strand, 45241032 - 45241809
Alignment:
| Q |
8 |
ccaagaatattgtttaattataatttataacaatatcattcttacattaagctaaaaaagaatttcaaaatagaaaaatatacttgtatgatcctttcaa |
107 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45241032 |
ccaaaaatattgtttaattatagtttataacaatatcattcttacattaagctaaaaaagaatttcaaaatagaaaaatatacttgtatgatcctttcaa |
45241131 |
T |
|
| Q |
108 |
aacaataggtttcaccatctcatttaaaatgctatggaatataaaattcaaatattaaaattctgattaattagcttaccnnnnnnntgtcttgattaat |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
45241132 |
aacaataggtttcaccatctcatttaaaatgctatggaatatcaaattccaatattaaaattctgattaattagcttaccaaaaaaatgtcttgattaat |
45241231 |
T |
|
| Q |
208 |
tcggcatccgactagttatgtcagttgccnnnnnnnnnnnnnnnnnngattccagatatttgttcaacaattttaaacaggagcctatagactagaagcc |
307 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45241232 |
tcggcatccgactagttatgtcagttgccaaaaaaaaaaaaaaaaa-gattccagatatttgttcaacaattttaaacaggagcctatagactagaagcc |
45241330 |
T |
|
| Q |
308 |
ttgttggatctttcttgcttccatgcagaaataagaaagggtaaaagaattgcacattaattaccattggttaaaagcaaagtcaacaatgatccaaaaa |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45241331 |
ctgttggatctttcttgcttccatgcagaaataagaaagggtaaaagaattgcacattaattaccattggttaaaagcaaagtcaacaatgatccaaaaa |
45241430 |
T |
|
| Q |
408 |
attgataaaattgtccttgttgttaatgttaatacatgcaatgtggcaggaatacctttcaagcaaacaatgagaagaattgaatgatcattgatctaaa |
507 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45241431 |
attgataaaattgtccttgttgtta-tgttaaaacatgcaatgtagcagggatacctttcaagcaaacaatgagaagaattgaatgatcattgatctaaa |
45241529 |
T |
|
| Q |
508 |
ggacaaaaaacatactaggtatatatgcccgaagaaagaattaaaaccttttaaaagtcattcctttaaacatgcaatattaattgcatccgtagcaaac |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45241530 |
ggacaaaaaacatactaggtatatatgcccgaagaaagaattaaaaccttttaacagtcattcctttaaacatgcaatattaattgcatccgtagcaaac |
45241629 |
T |
|
| Q |
608 |
taaaagaagattgctccatctagacaccaaaaacatttactaagtctacatgcttgcctcattttatagttcacaaacacaaaggttataaatcaatcat |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45241630 |
taaaagaagattgctccatctagacaccaaaaacatttactaagtctacatgcttgcctcattttatagttcacaaacacaaaggttataaatcaatcat |
45241729 |
T |
|
| Q |
708 |
cttcaatattgacatctaaattgatggtgatatgatgctcaagcttcatgtgccatgccaaattttttgcagcaaaaaat |
787 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
45241730 |
cttcaatattgacatctaaattgatggtgatatgatgctcaagcttcatgtgccatgccaaattttttgcagcgaaaaat |
45241809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 337 - 712
Target Start/End: Original strand, 45219166 - 45219543
Alignment:
| Q |
337 |
aataagaaagggtaaaagaattgcacattaattaccattggttaaaagcaaagtcaacaatgatccaaaaaattgataaaattgtccttgttgttaatgt |
436 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
45219166 |
aataagaaagggtaaaagaattgcacattaattaccattggttaaaagcaaagtcaacaatgatccaaaaaattgataaaattgttcttgttgttaatgt |
45219265 |
T |
|
| Q |
437 |
taatacatgcaatgtggcaggaatacctttcaagcaaacaatgagaagaattgaatgatcattgatctaaagg--acaaaaaacatactaggtatatatg |
534 |
Q |
| |
|
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||| |
|
|
| T |
45219266 |
taaaacatgcaatgtggcagggatacctttcaagcaaacaatgagaagaattgaatgatcattgatctaaaagaaaaaaaaaacatactaggtatatatg |
45219365 |
T |
|
| Q |
535 |
cccgaagaaagaattaaaaccttttaaaagtcattcctttaaacatgcaatattaattgcatccgtagcaaactaaaagaagattgctccatctagacac |
634 |
Q |
| |
|
||| ||||||||||||||| ||||||| | ||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
45219366 |
cccaaagaaagaattaaaaacttttaacaatcattcctttacacatggaatattaattgcatccatagcaaactaaaagaagattgctccatctagacac |
45219465 |
T |
|
| Q |
635 |
caaaaacatttactaagtctacatgcttgcctcattttatagttcacaaacacaaaggttataaatcaatcatcttca |
712 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
45219466 |
caaaatcatttactaagtctacatgcttgactcgttttatagttcacaaacacaaaggttctaaatcaatcaacttca |
45219543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 32 - 186
Target Start/End: Original strand, 45218993 - 45219147
Alignment:
| Q |
32 |
ttataacaatatcattcttacattaagctaaaaaagaatttcaaaatagaaaaatatacttgtatgatcctttcaaaacaataggtttcaccatctcatt |
131 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
45218993 |
ttataacaatatcattcttacattaggctaaaaaagaatttcaaaaaagaaaaatatacttgtatgatcctttcaaaacaatgggtttcaccatctcatt |
45219092 |
T |
|
| Q |
132 |
taaaatgctatggaatataaaattcaaatattaaaattctgattaattagcttac |
186 |
Q |
| |
|
||||||| |||||||||| || ||| ||||||||||||||||||||||| ||||| |
|
|
| T |
45219093 |
taaaatggtatggaatatcaacttccaatattaaaattctgattaattatcttac |
45219147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 6e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 649 - 755
Target Start/End: Original strand, 39426791 - 39426897
Alignment:
| Q |
649 |
aagtctacatgcttgcctcattttatagttcacaaacacaaaggttataaatcaatcatcttcaatattgacatctaaattgatggtgatatgatgctca |
748 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||||| | || || ||| | ||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
39426791 |
aagtctacatgattgcctcattttagagttcacaaacacagattttctagatcgaccattttcaatattgacatttaaattgatggtgatatgatgctca |
39426890 |
T |
|
| Q |
749 |
agcttca |
755 |
Q |
| |
|
||||||| |
|
|
| T |
39426891 |
agcttca |
39426897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 704 - 755
Target Start/End: Original strand, 39426148 - 39426199
Alignment:
| Q |
704 |
tcatcttcaatattgacatctaaattgatggtgatatgatgctcaagcttca |
755 |
Q |
| |
|
|||| |||||||| |||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
39426148 |
tcattttcaatatggacatctaaattgactgtgatatgatgctcatgcttca |
39426199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 9e-23; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 657 - 748
Target Start/End: Original strand, 9287490 - 9287581
Alignment:
| Q |
657 |
atgcttgcctcattttatagttcacaaacacaaaggttataaatcaatcatcttcaatattgacatctaaattgatggtgatatgatgctca |
748 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||| || |||||||| ||| |||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
9287490 |
atgcttgcctcactttagagttcacaaacacaaatattttaaatcaaccattttcaattttgacatctaaattgattgtgatatgatgctca |
9287581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 600 - 742
Target Start/End: Original strand, 9300763 - 9300899
Alignment:
| Q |
600 |
tagcaaactaaaagaagattgctccatctagacaccaaaaacatttactaagtctacatgcttgcctcattttatagttcacaaacacaaaggttataaa |
699 |
Q |
| |
|
|||||||| |||| |||||||| ||||| || ||||||| |||| |||||| ||||||||||||||||| |||||||||||||||| || |||| |
|
|
| T |
9300763 |
tagcaaaccaaaaagagattgctgcatctggataccaaaatcatt-actaag-----atgcttgcctcattttagagttcacaaacacaaattttttaaa |
9300856 |
T |
|
| Q |
700 |
tcaatcatcttcaatattgacatctaaattgatggtgatatga |
742 |
Q |
| |
|
|| | ||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
9300857 |
tcgaccattttcaatattgacatctaaattgactgtgatatga |
9300899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 657 - 755
Target Start/End: Original strand, 10346612 - 10346713
Alignment:
| Q |
657 |
atgcttgcctcattttatagttcacaaacaca---aaggttataaatcaatcatcttcaatattgacatctaaattgatggtgatatgatgctcaagctt |
753 |
Q |
| |
|
||||||||||||||||| |||||||||||||| || || ||||| | ||| ||| |||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
10346612 |
atgcttgcctcattttagagttcacaaacacatacaaattttcaaatcgaccattttcgatattgacatctaaattgatggtgatatgatgctcatgctt |
10346711 |
T |
|
| Q |
754 |
ca |
755 |
Q |
| |
|
|| |
|
|
| T |
10346712 |
ca |
10346713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 657 - 755
Target Start/End: Original strand, 10351082 - 10351184
Alignment:
| Q |
657 |
atgcttgcctcattttatagttcacaaacaca----aaggttataaatcaatcatcttcaatattgacatctaaattgatggtgatatgatgctcaagct |
752 |
Q |
| |
|
||||||| ||||||||| |||||||||||||| || || |||||| | ||| ||||||||||||||||| |||||||||||||||||| ||| ||| |
|
|
| T |
10351082 |
atgcttggctcattttagagttcacaaacacatacaaattttttaaatcgaccattttcaatattgacatctacattgatggtgatatgatgatcatgct |
10351181 |
T |
|
| Q |
753 |
tca |
755 |
Q |
| |
|
||| |
|
|
| T |
10351182 |
tca |
10351184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 657 - 754
Target Start/End: Original strand, 10334603 - 10334706
Alignment:
| Q |
657 |
atgcttgcctcattttatagttcacaaacacaaagg------ttataaatcaatcatcttcaatattgacatctaaattgatggtgatatgatgctcaag |
750 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||| || |||||| | ||| ||||||||||||||||| |||||||||||||||||||||| | |
|
|
| T |
10334603 |
atgcttgcctcattttagagttcaaaaacacaaatacaaattttttaaatcgaccattttcaatattgacatctacattgatggtgatatgatgctcatg |
10334702 |
T |
|
| Q |
751 |
cttc |
754 |
Q |
| |
|
|||| |
|
|
| T |
10334703 |
cttc |
10334706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 155
Target Start/End: Original strand, 10340100 - 10340221
Alignment:
| Q |
33 |
tataacaatatcattcttacattaagctaaaaaagaatttcaaaatagaaaa----atatacttgtatgatcctttcaaaacaataggtttcaccatctc |
128 |
Q |
| |
|
||||||| ||||||||||||||| |||||||| || || |||| |||||| ||||| | ||||||||||||||||||| |||||| | ||||| |
|
|
| T |
10340100 |
tataacagtatcattcttacattttgctaaaaatgattt--aaaaaagaaaacacaatataatcgtatgatcctttcaaaaca---ggtttcgctatctc |
10340194 |
T |
|
| Q |
129 |
atttaaaatgctatggaatataaaatt |
155 |
Q |
| |
|
||||||||| |||||||||| ||||| |
|
|
| T |
10340195 |
atttaaaatagtatggaatatgaaatt |
10340221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 659 - 785
Target Start/End: Complemental strand, 10857117 - 10856990
Alignment:
| Q |
659 |
gcttgcctcattttatagttcacaaacacaaaggttataaatcaatcatcttcaatattgacatctaaattgatggtgatatgatgctcaagcttcatgt |
758 |
Q |
| |
|
||||||||||||||| |||||||||||||||| || |||||| | ||| || |||||| ||||||||||||| |||||||||||||||| |||| | | |
|
|
| T |
10857117 |
gcttgcctcattttagagttcacaaacacaaattttttaaatcgaccatattgaatatttacatctaaattgaaggtgatatgatgctcatgctttacat |
10857018 |
T |
|
| Q |
759 |
gcc-atgccaaattttttgcagcaaaaa |
785 |
Q |
| |
|
||| |||||||| | |||||||| |||| |
|
|
| T |
10857017 |
gcctatgccaaaatctttgcagccaaaa |
10856990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 8e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 657 - 755
Target Start/End: Original strand, 26573873 - 26573973
Alignment:
| Q |
657 |
atgcttgcctcattttatagttcacaaaca--caaaggttataaatcaatcatcttcaatattgacatctaaattgatggtgatatgatgctcaagcttc |
754 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||| || ||||| || ||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
26573873 |
atgcttgcctcattttagagttcacaaacatacaaattttttaaattgcccaatttcaatattgacatctacattgatggtgatatgatgctcaagcttc |
26573972 |
T |
|
| Q |
755 |
a |
755 |
Q |
| |
|
| |
|
|
| T |
26573973 |
a |
26573973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 715 - 748
Target Start/End: Original strand, 560526 - 560559
Alignment:
| Q |
715 |
attgacatctaaattgatggtgatatgatgctca |
748 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
560526 |
attgacatctaaattgatggtgatatgatgctca |
560559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 668 - 740
Target Start/End: Original strand, 36223632 - 36223704
Alignment:
| Q |
668 |
attttatagttcacaaacacaaaggttataaatcaatcatcttcaatattgacatctaaattgatggtgatat |
740 |
Q |
| |
|
|||||| |||||||||||||| | || |||||| | || |||||||||||||||||||||||||||||||| |
|
|
| T |
36223632 |
attttagagttcacaaacacagattttctaaatcgacaattttcaatattgacatctaaattgatggtgatat |
36223704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 539 - 592
Target Start/End: Original strand, 36223480 - 36223532
Alignment:
| Q |
539 |
aagaaagaattaaaaccttttaaaagtcattcctttaaacatgcaatattaatt |
592 |
Q |
| |
|
|||||||||||||||||| || | |||| |||||||||||||||||||||||| |
|
|
| T |
36223480 |
aagaaagaattaaaacctactaca-gtcactcctttaaacatgcaatattaatt |
36223532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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