View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16989_low_4 (Length: 410)
Name: NF16989_low_4
Description: NF16989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16989_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 22 - 399
Target Start/End: Complemental strand, 34439504 - 34439125
Alignment:
| Q |
22 |
caccgatcatgtcaccgccatccaaaaaggtgggaacggaaaagatctgcatcgatgagatgcttgaaaaatactgtggtgagtttggaaaatggcagct |
121 |
Q |
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| T |
34439504 |
caccgatcatgtcaccgccgtccaaaaaggcgggaacggaaaagatctgcatcgatgagatgcttgagaaatactgtggtgagtttggaaaatggcagct |
34439405 |
T |
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| Q |
122 |
gaaacacttcattctcacatat--tgcttgggctttggaagcttttcatactatggttatgatttttgctgatagggaacctgattggaagtgtgttgaa |
219 |
Q |
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| T |
34439404 |
gaaacacttcattctcacatgtcttgcttgggcgttggaagcttttcatactatggttatgatttttgctgatagggaacctgattggaagtgtgttgaa |
34439305 |
T |
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| Q |
220 |
ggtatggagtgttcagccgatggaagtgtctgcgatatggcgtcgtcgtcgtgggagtggatcggagggaaagatgcttctacggtgactgagtggagtt |
319 |
Q |
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| T |
34439304 |
ggtatggagtgttccgccgatggaagtgtctgcgatatggcgtcgtcgtcgtgggagtggatcggagggaaagatgcttctacggtgactgagtggagtt |
34439205 |
T |
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| Q |
320 |
tgatatgtggtgacaagtttaaagttggacttgttcaagctgttttctttactggttgtatgattggttcgttcattctt |
399 |
Q |
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| T |
34439204 |
tgatatgtggtgacaagtttaaagttggacttgttcaagctgttttctttactggttgtatgattggttcgttcattctt |
34439125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 60 - 394
Target Start/End: Complemental strand, 34422608 - 34422272
Alignment:
| Q |
60 |
gaaaagatctgcatcgatgagatgcttgaaaaatactgtggtgagtttggaaaatggcagctgaaacacttcattctcaca--tattgcttgggctttgg |
157 |
Q |
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| T |
34422608 |
gaaaaaatctgcatcgatgagatgcttgagaaatactgtggtgagtttggaaaatggcagctgaaacacttcattctcacaagtcttgcttgggcgttgg |
34422509 |
T |
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| Q |
158 |
aagcttttcatactatggttatgatttttgctgatagggaacctgattggaagtgtgttgaaggtatggagtgttcagccgatggaagtgtctgcgatat |
257 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
34422508 |
aagcttttcatactatggttatgatttttgctgatagggaacctgattggaagtgtgttgaaggtatggagtgttccgccaatggaagtgtctgcgatat |
34422409 |
T |
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| Q |
258 |
ggcgtcgtcgtcgtgggagtggatcggagggaaagatgcttctacggtgactgagtggagtttgatatgtggtgacaagtttaaagttggacttgttcaa |
357 |
Q |
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| T |
34422408 |
ggcatcgtcgtcgtggcagtgggttgctggtgaaggtgcttctacggtgtctgaatggagtttgatttgtggtgataagtttaagattggacttgttcaa |
34422309 |
T |
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| Q |
358 |
gctgttttctttactggttgtatgattggttcgttca |
394 |
Q |
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||| |||||||| |||| ||||||||||||| ||||| |
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| T |
34422308 |
gctcttttctttgctgggtgtatgattggttagttca |
34422272 |
T |
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