View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16989_low_5 (Length: 396)
Name: NF16989_low_5
Description: NF16989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16989_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 18761703 - 18761493
Alignment:
| Q |
19 |
aaaaagctgacctcgtctcctgtaatagcgttttggctgtcggcgctattaacagatgacatatgtaatagcactctgtataaaaacgctaatataggtt |
118 |
Q |
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|||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18761703 |
aaaaagctgacctcgtctcccgtaatagcgttttggctgcaggcgctattaacagatgacatatgtaatagcactctgtataaaaacgctaatataggta |
18761604 |
T |
|
| Q |
119 |
gtttnnnnnnntaaaggaaaagtatgatatcgcttttacaggaacgctaatataaggatatattatttgttagcactttatgactaaatgctatcttagc |
218 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18761603 |
gtttaaaaaaataaaggaaaagtatgatatcgcttttacaggaacgctaatataaggatatattatttgttagcactttatgactaaatgctatcttagc |
18761504 |
T |
|
| Q |
219 |
cattgtcaaat |
229 |
Q |
| |
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||||||||||| |
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| T |
18761503 |
cattgtcaaat |
18761493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 261 - 389
Target Start/End: Complemental strand, 18761457 - 18761329
Alignment:
| Q |
261 |
ccgcacatgttttcatcctttcgcgctgaactgtttttcctttccctctcttctcccaaaaccagatttaacacagtaccctctcaaaaccagcacccac |
360 |
Q |
| |
|
||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
18761457 |
ccgcaaatgttttcatcctttggcgctgaactatttttcctttccctctcttctcccaaaaccagatttaacacagtaccctctcaaaactagtacccac |
18761358 |
T |
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| Q |
361 |
gtcgatccagacaacccttcttcatctca |
389 |
Q |
| |
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|||||||||||||||||||||| ||||| |
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| T |
18761357 |
atcgatccagacaacccttcttcctctca |
18761329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 10979638 - 10979848
Alignment:
| Q |
19 |
aaaaagctgacctcgtctcctgtaatagcgttttggctgtcggcgctattaacagatgacatatgtaatagcactctgtataaaaacgctaatataggtt |
118 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10979638 |
aaaaagctgacctcgtctcccgtaatagcgttttggctgcaggcgctattaacagatgacatatgtaatagcactctgtataaaaacgctaatataggta |
10979737 |
T |
|
| Q |
119 |
gtttnnnnnnntaaaggaaaagtatgatatcgcttttacaggaacgctaatataaggatatattatttgttagcactttatgactaaatgctatcttagc |
218 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10979738 |
gtttaaaaaaataaaggaaaagtatgatatcgcttttacaggaacgctaatataaggatatattatttgttagcactttatgactaaatgctatcttagc |
10979837 |
T |
|
| Q |
219 |
cattgtcaaat |
229 |
Q |
| |
|
||||||||||| |
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|
| T |
10979838 |
cattgtcaaat |
10979848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 267 - 389
Target Start/End: Original strand, 10979889 - 10980011
Alignment:
| Q |
267 |
atgttttcatcctttcgcgctgaactgtttttcctttccctctcttctcccaaaaccagatttaacacagtaccctctcaaaaccagcacccacgtcgat |
366 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
10979889 |
atgttttcatcctttggcgctgaactatttttcctttccctctcttctcccaaaaccagatttaacacagtaccctctcaaaaccagtacccacatcgat |
10979988 |
T |
|
| Q |
367 |
ccagacaacccttcttcatctca |
389 |
Q |
| |
|
||||||||||||||||| ||||| |
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|
| T |
10979989 |
ccagacaacccttcttcctctca |
10980011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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