View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16989_low_6 (Length: 371)
Name: NF16989_low_6
Description: NF16989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16989_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 123; Significance: 4e-63; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 232 - 354
Target Start/End: Original strand, 8009004 - 8009126
Alignment:
| Q |
232 |
tcgttaatattttgcatgtctaaggaagtgtgaggaggacgtgtaatttagaactaaactttcggttacggtttatgctctccatgtcaaacacatttcc |
331 |
Q |
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| T |
8009004 |
tcgttaatattttgcatgtctaaggaagtgtgaggaggacgtgtaatttagaactaaactttcggttacggtttatgctctccatgtcaaacacatttcc |
8009103 |
T |
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| Q |
332 |
cttttatattaccttctaaacgt |
354 |
Q |
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| T |
8009104 |
cttttatattaccttctaaacgt |
8009126 |
T |
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Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 28 - 123
Target Start/End: Original strand, 8008803 - 8008898
Alignment:
| Q |
28 |
gagagaaaaggatcttactatcacgactgatatggcgaaaaggcctataatccgatccaccaccgccataagagaattcagaatctgatagcgaca |
123 |
Q |
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| T |
8008803 |
gagagaaaaggatcttactatcacgactgatatggcgaaaaggcctataatccgatccaccaccgccataagagaattcagaatccgatagcgaca |
8008898 |
T |
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