View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16989_low_8 (Length: 273)
Name: NF16989_low_8
Description: NF16989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16989_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 34 - 249
Target Start/End: Complemental strand, 25640211 - 25639996
Alignment:
| Q |
34 |
tacctggatatccgtccatagttgttcaacgctgctgtcaggcaaatgcaattcaacaaggtgatatggttgaaagtttgatggcaaagaaatgaaaggg |
133 |
Q |
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|||||||||||| |||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
25640211 |
tacctggatatctgtccatagttgttcgacgctgctgccaggcaaattcaattcaacaaggtgatatggttgaaaatttgatggcaaagaaatgaaaggg |
25640112 |
T |
|
| Q |
134 |
taaccactccacaaaagataacgtagggaattagaaagaaatgagagttttcctgaaaaattcttatgatttaatatgagcagtttcaaatgctccattt |
233 |
Q |
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||| || |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||| || |
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| T |
25640111 |
taatcattccacaaaagataacgtagggaattagaaagaaatgagggtcttcctgaaaaattcttatgatttaatatgagcagtttcaagtgctccagtt |
25640012 |
T |
|
| Q |
234 |
ttgacaaatcttcagc |
249 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
25640011 |
ttgacaaatcttcagc |
25639996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 48 - 252
Target Start/End: Original strand, 25433461 - 25433665
Alignment:
| Q |
48 |
tccatagttgttcaacgctgctgtcaggcaaatgcaattcaacaaggtgatatggttgaaagtttgatggcaaagaaatgaaagggtaaccactccacaa |
147 |
Q |
| |
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||||||| ||||||| ||| || ||||||| || |||||| ||||||||| ||||||||| |||||||||||||| || |||||||||||| ||||||| |
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| T |
25433461 |
tccatagctgttcaatgctactatcaggcatattcaattcttcaaggtgatgtggttgaaaatttgatggcaaagacataaaagggtaaccattccacaa |
25433560 |
T |
|
| Q |
148 |
aagataacgtagggaattagaaagaaatgagagttttcctgaaaaattcttatgatttaatatgagcagtttcaaatgctccatttttgacaaatcttca |
247 |
Q |
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|| ||| |||||||||| ||||||| || |||||||||||||||| |||||| ||||||||||| || ||| | ||||||||||| ||||||||| |
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| T |
25433561 |
aacatagcgtagggaatcagaaagacatattggttttcctgaaaaatttgtatgatataatatgagcacttccaacttttccatttttgataaatcttca |
25433660 |
T |
|
| Q |
248 |
gccct |
252 |
Q |
| |
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||||| |
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| T |
25433661 |
gccct |
25433665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 48 - 170
Target Start/End: Complemental strand, 25448044 - 25447922
Alignment:
| Q |
48 |
tccatagttgttcaacgctgctgtcaggcaaatgcaattcaacaaggtgatatggttgaaagtttgatggcaaagaaatgaaagggtaaccactccacaa |
147 |
Q |
| |
|
|||||||||| |||| |||||| ||||||| || |||||| ||||| |||||||||||||| | |||||||||||| ||||||||||||||| ||||||| |
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| T |
25448044 |
tccatagttgctcaatgctgctatcaggcatattcaattctacaagctgatatggttgaaactctgatggcaaagacatgaaagggtaaccattccacaa |
25447945 |
T |
|
| Q |
148 |
aagataacgtagggaattagaaa |
170 |
Q |
| |
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|| ||| |||||||||| ||||| |
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|
| T |
25447944 |
aacatagcgtagggaatcagaaa |
25447922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 64 - 252
Target Start/End: Complemental strand, 25487287 - 25487099
Alignment:
| Q |
64 |
gctgctgtcaggcaaatgcaattcaacaaggtgatatggttgaaagtttgatggcaaagaaatgaaagggtaaccactccacaaaagataacgtagggaa |
163 |
Q |
| |
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|||||| ||||||| || |||||| ||||| ||| ||||||||| |||||||||||||| |||||||||||||| ||||||||||||| | ||||||| |
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| T |
25487287 |
gctgctatcaggcatattcaattctacaagccgatgtggttgaaaatttgatggcaaagacgtgaaagggtaaccattccacaaaagatagcatagggaa |
25487188 |
T |
|
| Q |
164 |
ttagaaagaaatgagagttttcctgaaaaattcttatgatttaatatgagcagtttcaaatgctccatttttgacaaatcttcagccct |
252 |
Q |
| |
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| ||||||| ||| | ||||||||||||| || | || ||||||||||| || ||| | |||| |||||| |||||||||||||| |
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| T |
25487187 |
tcagaaagagatgtgggttttcctgaaaattttgatttatataatatgagcacttccaagttttccaattttgataaatcttcagccct |
25487099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 48 - 224
Target Start/End: Original strand, 25476795 - 25476971
Alignment:
| Q |
48 |
tccatagttgttcaacgctgctgtcaggcaaatgcaattcaacaaggtgatatggttgaaagtttgatggcaaagaaatgaaagggtaaccactccacaa |
147 |
Q |
| |
|
|||||||||| |||| | |||| || |||| || |||||| || || |||||||| | ||| |||||||||| ||| |||||||||||||||||||||| |
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| T |
25476795 |
tccatagttgctcaatgttgctatccggcatattcaattctacgagctgatatggattaaaatttgatggcagagacatgaaagggtaaccactccacag |
25476894 |
T |
|
| Q |
148 |
aagataacgtagggaattagaaagaaatgagagttttcctgaaaaattcttatgatttaatatgagcagtttcaaat |
224 |
Q |
| |
|
|||||| ||||||||||||||||||| | | ||||||||||||| |||||| |||||||||| |||||||| |
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| T |
25476895 |
aagatagtatagggaattagaaagaaatatggggcttcctgaaaaatttgtatgatacaatatgagcactttcaaat |
25476971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 49 - 247
Target Start/End: Original strand, 25502836 - 25503034
Alignment:
| Q |
49 |
ccatagttgttcaacgctgctgtcaggcaaatgcaattcaacaaggtgatatggttgaaagtttgatggcaaagaaatgaaagggtaaccactccacaaa |
148 |
Q |
| |
|
||||| |||||| | | ||||||||| || || |||||||||||||| | ||| ||||| |||||||| ||||| |||||||||||||| ||||| || |
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| T |
25502836 |
ccataattgttcgatgttgctgtcagacatattcaattcaacaaggtcgtgtggctgaaaatttgatggtaaagaggtgaaagggtaaccattccacgaa |
25502935 |
T |
|
| Q |
149 |
agataacgtagggaattagaaagaaatgagagttttcctgaaaaattcttatgatttaatatgagcagtttcaaatgctccatttttgacaaatcttca |
247 |
Q |
| |
|
| || |||| |||| |||| | || | | ||||||||||||||||| |||||||||||||| ||||||| |||| ||||||||| ||||||||| |
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| T |
25502936 |
aaattgtataggaaatttgaaaaagatatgggatttcctgaaaaattcttgtgatttaatatgagtagtttcaggtgctacatttttgataaatcttca |
25503034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 49 - 252
Target Start/End: Original strand, 497539 - 497742
Alignment:
| Q |
49 |
ccatagttgttcaacgctgctgtcaggcaaatgcaattcaacaaggtgatatggttgaaagtttgatggcaaagaaatgaaagggtaaccactccacaaa |
148 |
Q |
| |
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||||||||||| | | |||||||||||| || |||||| || |||| || | | |||| ||||||||||||||| |||||| ||||| ||||| || |
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| T |
497539 |
ccatagttgtttgatgttgctgtcaggcatattcaattcgaccaggtcatgtagctgaatatttgatggcaaagaatcgaaaggaaaaccattccacgaa |
497638 |
T |
|
| Q |
149 |
agataacgtagggaattagaaagaaatgagagttttcctgaaaaattcttatgatttaatatgagcagtttcaaatgctccatttttgacaaatcttcag |
248 |
Q |
| |
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||||||| || ||||||||||||||| | | | |||||||||||||||||| |||||||||||||||| |||| | | ||||| |||||||||| |
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| T |
497639 |
agataacataaagaattagaaagaaatatgggctctcctgaaaaattcttatggcacaatatgagcagtttcagatgcccgagctttgataaatcttcag |
497738 |
T |
|
| Q |
249 |
ccct |
252 |
Q |
| |
|
|||| |
|
|
| T |
497739 |
ccct |
497742 |
T |
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