View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1698_high_10 (Length: 365)
Name: NF1698_high_10
Description: NF1698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1698_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 3592436 - 3592086
Alignment:
| Q |
1 |
catagccattccactacttgttgcaggtatctcccatggctgtgtaatagtgccactcccactagtgcttggcattgcactgttgttaatagttgactcc |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
3592436 |
catatccattccactacttgttgcaggtatctcccatggctgtgtaatagtgccactaccactagtgcttggcattgcactgttgttaatagttgactcc |
3592337 |
T |
|
| Q |
101 |
tccattattttaaactcttcatcaccatagttatatccattagttgaccttaaagtgcttgagtttgagaatgggaatataaagctttggttttgatgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3592336 |
tccattattttaaactcttcatcaccatagttatatccattatttgaccttaaagtgcttgagtttgagaatgggaatataaagctttggttttgatgaa |
3592237 |
T |
|
| Q |
201 |
agggcatagatgaactcagaaacatgccattaccaataccaaactcttcattattaccttctgattgatctttggtactgattagaatctgtggtggcaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3592236 |
agggcatagatgaactcagaaacatgccattaccaataccaaactcttcattattaccttctgattgatctttggtactgattagattctgtggtggcaa |
3592137 |
T |
|
| Q |
301 |
aaaagatggtggatgaataagagattcatgcatagaagaaggtgtgttttt |
351 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3592136 |
aaaagatggtggatgaataagagattcatgcatagaagaaggtgtgttttt |
3592086 |
T |
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