View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1698_high_17 (Length: 305)
Name: NF1698_high_17
Description: NF1698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1698_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 35218576 - 35218289
Alignment:
| Q |
1 |
tacacaggtaaatgtgtaaagtcaaagtttgactctttgggcctagtatacaaaagcaggtcaaatattattctactcacatcaatcagcatagtgtcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
35218576 |
tacacaggtaaatgtgtaaagtcaaagtttgactctttgggcctagtatacaaaagcaggtcaaatattattttactcacatcaatcagcatagtgtcaa |
35218477 |
T |
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| Q |
101 |
tttcacatatgtcaatttgttcaacagaagagtggcgggaaatttccctaaggatgccaccatctcctccaccaaaaagcagcacctataaattagagga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35218476 |
tttcacatatgtcaatttgttcaacagaagagtggcgggaaatttccctaaggatgccaccatctcctccaccaaaaagcagcacctataaattagagga |
35218377 |
T |
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| Q |
201 |
cagnnnnnnnnnnnntgtaacatttcagcaaatcatggtttaacacacttataacatagtactgcactattgaaaacacacttataac |
288 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35218376 |
cagaaaaacaaaaaatgtaacatttcagcaaatcatggtttaacacacttataacatagtactgcactattgaaaacacacttataac |
35218289 |
T |
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