View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1698_high_21 (Length: 271)
Name: NF1698_high_21
Description: NF1698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1698_high_21 |
 | |
|
| [»] chr2 (3 HSPs) |
| |
|
| [»] chr5 (6 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] scaffold0200 (1 HSPs) |
| | |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr1 (3 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 50 - 271
Target Start/End: Complemental strand, 6178324 - 6178103
Alignment:
| Q |
50 |
aagctagcaaaagttagaagacactaagatttaacaccttccaaatgacaacatgtattacaggtcatgaattatttgtaaagaagttaggattgagtta |
149 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6178324 |
aagctagcaaaagttagaagacactaagatttaacaccttccaaatgacaacatgtattacaggtcatgaattatttgtaaagaagttaggattgagtta |
6178225 |
T |
|
| Q |
150 |
cactccttcctttcaatgttgtgaacttgcttcctttcacagtcagcataaatgaatttgaaaaaagggggcttctacggtgcagccaaaaaactgactt |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
6178224 |
cactccttcctttcaatgttgtgaacttgcttcctttcacagtaagcataaatgaatttgaaaaaagagggcttctacggtgcagtcaaaaaactgactt |
6178125 |
T |
|
| Q |
250 |
ttttagagaagttattttgttt |
271 |
Q |
| |
|
||||||| |||||||||||||| |
|
|
| T |
6178124 |
ttttagaaaagttattttgttt |
6178103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 271
Target Start/End: Complemental strand, 7565677 - 7565620
Alignment:
| Q |
214 |
aagggggcttctacggtgcagccaaaaaactgacttttttagagaagttattttgttt |
271 |
Q |
| |
|
||||| ||||||||||||||| ||||||| ||||||||||| | |||| ||||||||| |
|
|
| T |
7565677 |
aagggagcttctacggtgcagtcaaaaaaatgacttttttaaaaaagtcattttgttt |
7565620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 271
Target Start/End: Complemental strand, 19093836 - 19093783
Alignment:
| Q |
218 |
gggcttctacggtgcagccaaaaaactgacttttttagagaagttattttgttt |
271 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||| | |||||| ||||||| |
|
|
| T |
19093836 |
gggcttctacggtgcagtcaaaaaattgacttttttaaaaaagttaatttgttt |
19093783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 216 - 271
Target Start/End: Complemental strand, 10237796 - 10237741
Alignment:
| Q |
216 |
gggggcttctacggtgcagccaaaaaactgacttttttagagaagttattttgttt |
271 |
Q |
| |
|
|||||||||||| |||||| ||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
10237796 |
gggggcttctacagtgcagtcaaaagactgacttttttagaaaagttattttgttt |
10237741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 271
Target Start/End: Complemental strand, 21321130 - 21321079
Alignment:
| Q |
220 |
gcttctacggtgcagccaaaaaactgacttttttagagaagttattttgttt |
271 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||| | |||||||||||||| |
|
|
| T |
21321130 |
gcttctatggtgcagccagaaaactgacttttttgaaaaagttattttgttt |
21321079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 271
Target Start/End: Complemental strand, 22616874 - 22616819
Alignment:
| Q |
216 |
gggggcttctacggtgcagccaaaaaactgacttttttagagaagttattttgttt |
271 |
Q |
| |
|
||||||||||| ||||||| || |||||||| |||||| || |||||||||||||| |
|
|
| T |
22616874 |
gggggcttctatggtgcagtcagaaaactgatttttttggaaaagttattttgttt |
22616819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 271
Target Start/End: Original strand, 8762857 - 8762915
Alignment:
| Q |
213 |
aaagggggcttctacggtgcagccaaaaaactgacttttttagagaagttattttgttt |
271 |
Q |
| |
|
|||||| ||||||| ||||||| ||||||| ||||||||||| | |||| ||||||||| |
|
|
| T |
8762857 |
aaagggagcttctatggtgcagtcaaaaaaatgacttttttaaaaaagtcattttgttt |
8762915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 214 - 271
Target Start/End: Complemental strand, 25654733 - 25654677
Alignment:
| Q |
214 |
aagggggcttctacggtgcagccaaaaaactgacttttttagagaagttattttgttt |
271 |
Q |
| |
|
||||||||||||| ||||| | ||| ||| ||||||||||||| |||||||||||||| |
|
|
| T |
25654733 |
aagggggcttctatggtgctgtcaataaa-tgacttttttagaaaagttattttgttt |
25654677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 271
Target Start/End: Original strand, 36055542 - 36055594
Alignment:
| Q |
219 |
ggcttctacggtgcagccaaaaaactgacttttttagagaagttattttgttt |
271 |
Q |
| |
|
|||||||| |||| || ||||||||| |||||||| || |||||||||||||| |
|
|
| T |
36055542 |
ggcttctaaggtgtagtcaaaaaactaacttttttggaaaagttattttgttt |
36055594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 263
Target Start/End: Original strand, 46297520 - 46297569
Alignment:
| Q |
214 |
aagggggcttctacggtgcagccaaaaaactgacttttttagagaagtta |
263 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||||||||| | |||||| |
|
|
| T |
46297520 |
aagggagcttctacggtgcagtcaaaaaactgacttttttaaaaaagtta |
46297569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 219 - 271
Target Start/End: Original strand, 31706487 - 31706539
Alignment:
| Q |
219 |
ggcttctacggtgcagccaaaaaactgacttttttagagaagttattttgttt |
271 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||| | |||||||||||||| |
|
|
| T |
31706487 |
ggcttcaacggtgcagtcaaaaaactgacttttttgaaaaagttattttgttt |
31706539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 271
Target Start/End: Original strand, 23402048 - 23402091
Alignment:
| Q |
228 |
ggtgcagccaaaaaactgacttttttagagaagttattttgttt |
271 |
Q |
| |
|
||||||| ||||||||||||||||||| | |||||||||||||| |
|
|
| T |
23402048 |
ggtgcagtcaaaaaactgacttttttaaaaaagttattttgttt |
23402091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 271
Target Start/End: Complemental strand, 2570862 - 2570807
Alignment:
| Q |
216 |
gggggcttctacggtgcagccaaaaaactgacttttttagagaagttattttgttt |
271 |
Q |
| |
|
||||| ||||||||||||| || |||||||| ||||||||| |||||||| ||||| |
|
|
| T |
2570862 |
gggggtttctacggtgcagtcagaaaactgatttttttagaaaagttattatgttt |
2570807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0200 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0200
Description:
Target: scaffold0200; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 270
Target Start/End: Original strand, 24486 - 24536
Alignment:
| Q |
220 |
gcttctacggtgcagccaaaaaactgacttttttagagaagttattttgtt |
270 |
Q |
| |
|
||||||||| ||||| ||||| |||||||||||||| ||||||||||||| |
|
|
| T |
24486 |
gcttctacgatgcagtaaaaaagctgacttttttagaaaagttattttgtt |
24536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 30650897 - 30650954
Alignment:
| Q |
214 |
aagggggcttctacggtgcagccaaaaaactgacttttttagagaagttattttgttt |
271 |
Q |
| |
|
||||| ||||||||||||||| ||| ||| |||||||||| | |||||||||||||| |
|
|
| T |
30650897 |
aagggagcttctacggtgcagtcaagaaattgacttttttgaaaaagttattttgttt |
30650954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 271
Target Start/End: Complemental strand, 5500734 - 5500682
Alignment:
| Q |
219 |
ggcttctacggtgcagccaaaaaactgacttttttagagaagttattttgttt |
271 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||| | |||||||||||||| |
|
|
| T |
5500734 |
ggcttctacggtgcagttaaaaaactaacttttttgaaaaagttattttgttt |
5500682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 263
Target Start/End: Complemental strand, 32216477 - 32216429
Alignment:
| Q |
215 |
agggggcttctacggtgcagccaaaaaactgacttttttagagaagtta |
263 |
Q |
| |
|
|||| ||||||||||||||| || |||||||||||||||| | |||||| |
|
|
| T |
32216477 |
agggagcttctacggtgcagtcagaaaactgacttttttaaaaaagtta |
32216429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 271
Target Start/End: Complemental strand, 47555140 - 47555084
Alignment:
| Q |
215 |
agggggcttctacggtgcagccaaaaaactgacttttttagagaagttattttgttt |
271 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||| | |||||||||||||| |
|
|
| T |
47555140 |
agggggcttctacggtgcagttaggaaactgacttttttgaaaaagttattttgttt |
47555084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University