View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1698_high_29 (Length: 239)
Name: NF1698_high_29
Description: NF1698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1698_high_29 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 20 - 232
Target Start/End: Complemental strand, 18199368 - 18199156
Alignment:
| Q |
20 |
atgtgtcttttgaattactaacaaagataggctcaacgatatttctgtaatttcgatacattaagagattataatgacattttcttacacatttaggtac |
119 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||| |
|
|
| T |
18199368 |
atgtgtcttttgaatcactaacaaagataggctcaacgatatttctgtaatttcgatacattaagatattatagtgacattgtcttacacatttaggtac |
18199269 |
T |
|
| Q |
120 |
caaaatgatcgttgactcgannnnnnngataaatatatgacagcaatgtgactttgagtaaatagtcattttggttcgtagatgtgtaagtcgtaaatta |
219 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||| |||| ||| |
|
|
| T |
18199268 |
caaaatgatcgttgactcgatttttttgataaatatatgacagcaatatgactttgagtaaatagtcattttagtttgtagatgtgtaagttgtaagtta |
18199169 |
T |
|
| Q |
220 |
gtttggtaatcgg |
232 |
Q |
| |
|
||||||||||||| |
|
|
| T |
18199168 |
gtttggtaatcgg |
18199156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University