View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1698_high_3 (Length: 507)
Name: NF1698_high_3
Description: NF1698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1698_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 1 - 490
Target Start/End: Original strand, 564165 - 564654
Alignment:
| Q |
1 |
gagggtgagaaacattgatgctttcttcaatcaaggctttaactgcttgtgattccaattctacaaagctattgactaatataccgtcgcaaagatttat |
100 |
Q |
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| T |
564165 |
gagggtgagaaacattgatgctttcttcaatcaaggctttaactgcttgtgattccaattctacaaagctattgactaatataccgtcgcaaagatttat |
564264 |
T |
|
| Q |
101 |
ccctttggaacggagaagaaaatggttgtaagactcactattcctgtcttgaaatgaagatggaagatcggttccttgaatcggtacacaacctgggatt |
200 |
Q |
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| T |
564265 |
ccctttggaacggagaagaaaatggttgtaagactcactattcctgtcttgaaatgaagatggaagatcggttccttgaatcggtacacaacctgggatt |
564364 |
T |
|
| Q |
201 |
ttgattggttcttgcaagtctttaaactcaccagaaattgtttcatctagaacttttgaatgaaaacaaagtgatagcactgtggctgatgaaggaaaat |
300 |
Q |
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| T |
564365 |
ttgattggttcttgcaagtctttaaactcaccagaaattgtttcatctagaacttttgaatgaaaacaaagtgataatactgtggctgatgaaggaaaat |
564464 |
T |
|
| Q |
301 |
atgtatatgataaaatgttgagtttcttggcaaatgagaacacttcataggcaaaataatcagctattatagcaactagttttgatgtttttgttttcaa |
400 |
Q |
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| T |
564465 |
atgtatatgataaaatgttgagtttcttggcaaatgagaacacttcataggcaaaataatcagctattatagcaactagttttgatgtttttgttttcaa |
564564 |
T |
|
| Q |
401 |
tgcatcaatgatagatggcatagttagagacattgaaagaggaagtttgagtgtagggacagtttgtggtggcaagttgattggtggaag |
490 |
Q |
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| T |
564565 |
tgcatcaatgatatatggcatagttagagacattgaaagaggaagtttgagtgtagggacagtttgtggtggcaagttgattggtggaag |
564654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 194 - 263
Target Start/End: Original strand, 874024 - 874093
Alignment:
| Q |
194 |
tgggattttgattggttcttgcaagtctttaaactcaccagaaattgtttcatctagaacttttgaatga |
263 |
Q |
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| T |
874024 |
tgggattatgattggttcttgcaagtctttaaattcaccagaaattattttatctagaacttttaaatga |
874093 |
T |
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