View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1698_high_34 (Length: 235)
Name: NF1698_high_34
Description: NF1698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1698_high_34 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 27561485 - 27561701
Alignment:
| Q |
1 |
ttatttagataaatttctgtacaagaccaatcacaaagtaggtgagaaagaaaatgaaagggcagtttgtgtgaataaccttcccattcaatttcgctga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
27561485 |
ttatttagataaatttctgtacaagaccaatcacaaagtaggtgagaaagaaaatgaaagggaagtttgtgtgaataaccttcccactcaatttcgctga |
27561584 |
T |
|
| Q |
101 |
atgaatgtgctttctcacgcaatgctacagctttaagagctgcatctttccatcgcttcaactgtgtttccatcatccccatttctttagataaagctga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27561585 |
atgaatgtgctttctcacgcaatgctacagctttaagagctgcatctttcgatcgcttcaactgtgtttccatcatccccatttctttagataaagctga |
27561684 |
T |
|
| Q |
201 |
agatatcacacgaaact |
217 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
27561685 |
agatatcacacgaaact |
27561701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 36668356 - 36668574
Alignment:
| Q |
1 |
ttatttagataaatttctgtacaagaccaatcacaaagtaggtgagaaagaaaatgaaagggcagtttgtgtgaataaccttcccattcaatttcgctg- |
99 |
Q |
| |
|
|||| ||||||| |||||||| |||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||| || |
|
|
| T |
36668356 |
ttatctagataactttctgtaaaagacctatcacaaagaaggtgagaaagaaaatgaaatggcagtttgtgtgaataaccttcccactcaatttctctct |
36668455 |
T |
|
| Q |
100 |
-aatgaatgtgctttctcacgcaatgctacagctttaagagctgcatctttccatcgcttcaactgtgtttccatcatccccatttctttagataaagct |
198 |
Q |
| |
|
| |||||||||||| ||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
36668456 |
tagcgaatgtgctttcgcacgcaatgatacagcttcatgagctgcatctttccatcgcttcaactgtgtttccatcatccccatttctttagataaggct |
36668555 |
T |
|
| Q |
199 |
gaagatatcacacgaaact |
217 |
Q |
| |
|
||||| ||||||| ||||| |
|
|
| T |
36668556 |
gaagacatcacaccaaact |
36668574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 164
Target Start/End: Complemental strand, 36672887 - 36672831
Alignment:
| Q |
108 |
tgctttctcacgcaatgctacagctttaagagctgcatctttccatcgcttcaactg |
164 |
Q |
| |
|
||||||||||| ||||| |||| ||| ||||||| |||||||||||| ||||||||| |
|
|
| T |
36672887 |
tgctttctcacacaatgatacaacttcaagagctacatctttccatcacttcaactg |
36672831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 198
Target Start/End: Complemental strand, 27563519 - 27563446
Alignment:
| Q |
126 |
tacagctttaagagctgcatctttccatcgcttcaactgtgtttccatcatcccc-atttctttagataaagct |
198 |
Q |
| |
|
|||| ||| |||||||||||| ||| ||| ||||||||| ||||||||||||| |||| ||||||||||||| |
|
|
| T |
27563519 |
tacaacttcaagagctgcatccttctatcacttcaactgctcttccatcatccccgatttttttagataaagct |
27563446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 24202708 - 24202490
Alignment:
| Q |
1 |
ttatttagataaatttctgtacaagaccaatcacaaagtaggtgagaaagaaaatgaaagggcagtttgtgtgaataaccttcccattcaatttcg--ct |
98 |
Q |
| |
|
|||| |||||||||| ||||| |||||| |||||||||| ||||| |||||||||||||||| | ||||||||||||||||||||| ||||||||| || |
|
|
| T |
24202708 |
ttatctagataaattgctgtaaaagacctatcacaaagtcggtgacaaagaaaatgaaagggaactttgtgtgaataaccttcccactcaatttcgctct |
24202609 |
T |
|
| Q |
99 |
gaatgaatgtgctttctcacgcaatgctacagctttaagagctgcatctttccatcgcttcaactgtgtttccatcatccccatttctttagataaagct |
198 |
Q |
| |
|
| ||||||||||||||||||||| | ||| |||| ||| |||||||||| |||||||||||||||| |||||||| ||||||||||||||||||| | |
|
|
| T |
24202608 |
tagtgaatgtgctttctcacgcaaggatacggcttcaagtgctgcatcttctcatcgcttcaactgtgcatccatcattcccatttctttagataaagtt |
24202509 |
T |
|
| Q |
199 |
gaagatatcacacgaaact |
217 |
Q |
| |
|
|||| || |||||||||| |
|
|
| T |
24202508 |
gaagccataacacgaaact |
24202490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 7 - 217
Target Start/End: Original strand, 29410894 - 29411106
Alignment:
| Q |
7 |
agataaatttctgtacaagaccaatcacaaagtaggtgagaaagaaaatgaaagggcagtttgtgtgaataaccttcccattcaattt--cgctgaatga |
104 |
Q |
| |
|
|||| |||||||||| ||||| ||||||||||||| ||||||||||||||||||| | ||| || |||||||||| ||| ||||||| | || | ||| |
|
|
| T |
29410894 |
agatgaatttctgtaaaagacttatcacaaagtaggcgagaaagaaaatgaaagggtactttatgcgaataacctttccactcaatttttctcttagtga |
29410993 |
T |
|
| Q |
105 |
atgtgctttctcacgcaatgctacagctttaagagctgcatctttccatcgcttcaactgtgtttccatcatccccatttctttagataaagctgaagat |
204 |
Q |
| |
|
||| ||||||||||| |||| |||||||| |||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
29410994 |
atgcgctttctcacgtaatgatacagcttcaagagctgcatctttccatcgcttcacctgcgcgtccatcatccccatttctttagataaagctgaagcc |
29411093 |
T |
|
| Q |
205 |
atcacacgaaact |
217 |
Q |
| |
|
||||||||||||| |
|
|
| T |
29411094 |
atcacacgaaact |
29411106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University