View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1698_high_5 (Length: 441)

Name: NF1698_high_5
Description: NF1698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1698_high_5
NF1698_high_5
[»] chr5 (13 HSPs)
chr5 (11-426)||(30097239-30097654)
chr5 (370-426)||(7195060-7195116)
chr5 (372-426)||(14302203-14302257)
chr5 (372-426)||(33109957-33110011)
chr5 (373-426)||(26045723-26045776)
chr5 (372-420)||(4914266-4914314)
chr5 (370-413)||(21398092-21398135)
chr5 (379-418)||(26405315-26405354)
chr5 (380-426)||(10174956-10175002)
chr5 (372-425)||(7682821-7682874)
chr5 (373-418)||(8297740-8297785)
chr5 (374-420)||(8731169-8731215)
chr5 (365-420)||(7161783-7161836)
[»] chr1 (13 HSPs)
chr1 (372-426)||(34775139-34775193)
chr1 (372-426)||(46768443-46768497)
chr1 (370-420)||(6583017-6583067)
chr1 (374-427)||(11439777-11439830)
chr1 (372-426)||(32863306-32863360)
chr1 (372-426)||(32882634-32882688)
chr1 (372-420)||(16577527-16577575)
chr1 (374-418)||(38548844-38548888)
chr1 (372-426)||(10785221-10785275)
chr1 (379-413)||(16149049-16149083)
chr1 (368-414)||(41126261-41126307)
chr1 (377-417)||(38544524-38544564)
chr1 (149-185)||(49270188-49270224)
[»] chr2 (15 HSPs)
chr2 (372-420)||(37770414-37770462)
chr2 (372-414)||(12343085-12343127)
chr2 (372-426)||(7696229-7696283)
chr2 (372-420)||(41113503-41113551)
chr2 (149-245)||(8222541-8222638)
chr2 (372-420)||(4975012-4975060)
chr2 (372-420)||(4992920-4992968)
chr2 (370-420)||(387440-387488)
chr2 (368-414)||(16952154-16952200)
chr2 (368-414)||(17022819-17022865)
chr2 (368-414)||(17060125-17060171)
chr2 (374-420)||(25504692-25504738)
chr2 (374-426)||(15126186-15126239)
chr2 (374-403)||(22884934-22884963)
chr2 (372-413)||(27879925-27879966)
[»] scaffold0050 (1 HSPs)
scaffold0050 (374-420)||(36976-37022)
[»] chr8 (4 HSPs)
chr8 (372-426)||(10248326-10248380)
chr8 (373-426)||(17656495-17656548)
chr8 (370-426)||(8862382-8862438)
chr8 (372-425)||(43312399-43312452)
[»] chr3 (10 HSPs)
chr3 (374-420)||(14194200-14194246)
chr3 (372-424)||(32010029-32010082)
chr3 (372-427)||(48893111-48893166)
chr3 (372-418)||(33143718-33143764)
chr3 (376-420)||(50518854-50518898)
chr3 (372-427)||(37123649-37123704)
chr3 (388-426)||(14280307-14280345)
chr3 (373-406)||(14893216-14893249)
chr3 (377-426)||(27399217-27399266)
chr3 (373-413)||(4171012-4171052)
[»] chr7 (8 HSPs)
chr7 (373-426)||(24324557-24324610)
chr7 (365-426)||(23983465-23983526)
chr7 (374-418)||(22567897-22567941)
chr7 (374-426)||(28534288-28534340)
chr7 (379-418)||(6492898-6492937)
chr7 (365-418)||(16954750-16954803)
chr7 (365-418)||(1321055-1321109)
chr7 (156-203)||(31924333-31924381)
[»] chr4 (11 HSPs)
chr4 (370-426)||(38636993-38637049)
chr4 (374-420)||(22810926-22810972)
chr4 (372-426)||(49747795-49747849)
chr4 (373-426)||(25753442-25753495)
chr4 (372-420)||(19311131-19311179)
chr4 (163-260)||(11395012-11395110)
chr4 (163-260)||(11404739-11404837)
chr4 (370-418)||(39420803-39420851)
chr4 (370-426)||(41117727-41117783)
chr4 (373-414)||(42719437-42719478)
chr4 (379-420)||(49528346-49528387)
[»] scaffold1384 (1 HSPs)
scaffold1384 (365-425)||(1416-1476)
[»] chr6 (4 HSPs)
chr6 (373-418)||(15120370-15120415)
chr6 (374-426)||(17278261-17278313)
chr6 (372-426)||(32935102-32935156)
chr6 (374-418)||(16180683-16180727)
[»] scaffold0063 (1 HSPs)
scaffold0063 (372-415)||(58396-58439)
[»] scaffold1613 (1 HSPs)
scaffold1613 (377-417)||(803-843)


Alignment Details
Target: chr5 (Bit Score: 372; Significance: 0; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 11 - 426
Target Start/End: Original strand, 30097239 - 30097654
Alignment:
Q  11 cacagaaactcaagcaatctctttcttctttacatagataatatagttaacaaaaacaaattactttcagctttttattcaccttccttagaaacatggt 110  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30097239 cacacaaactcaagcaatctctttcttctttacatagataatatagttaacaaaaacaaattactttcagctttttattcaccttccttagaaacatggt 30097338  T
Q  111 tatagtataaattctcgctttagttccaagctatcggaaaaaacacaagttccacattgaaaagcgataaagtctaaaatagtttataaagagtgacatt 210  Q
    |||||||||||||||||||||||||  |||||||||| ||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||| |    
T  30097339 tatagtataaattctcgctttagttagaagctatcgggaaaaacacaagtttcatattgaagagcgataaagtctaaaatagtttataaagagtgacact 30097438  T
Q  211 actcatctaacaaggcgattttataaggatgagttagacataatataaaaatcgaatattgatatcagattttatccattcggttcatccaccaaaatat 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  30097439 actcatctaacaaggcgattttataaggatgagttagacataatataaaaatcgaatattgatatcagagtttatccattcggttcatccaccaaaatat 30097538  T
Q  311 gaactcactaatccaatagtgtttgttttgtaacacaatataaaaccaatataaagtgtttgttttcgtgaaggagtctgttttaggtggtgacgtgtat 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  30097539 gaactcactaatccaatagtgtttgttttgtaacacaatataaaaccaatataaagtgcttgttttcgtgaaggagtctgttttaggtggtgacgtgtat 30097638  T
Q  411 tttggtgggtattgtc 426  Q
    |||||||||| |||||    
T  30097639 tttggtgggtgttgtc 30097654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 370 - 426
Target Start/End: Complemental strand, 7195116 - 7195060
Alignment:
Q  370 ttgttttcgtgaaggagtctgttttaggtggtgacgtgtattttggtgggtattgtc 426  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7195116 ttgtttttgtgaaggagtctgttttaggtggtgacgtgtattttggtgggtgttgtc 7195060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 372 - 426
Target Start/End: Complemental strand, 14302257 - 14302203
Alignment:
Q  372 gttttcgtgaaggagtctgttttaggtggtgacgtgtattttggtgggtattgtc 426  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||| |||||    
T  14302257 gttttcgcgaaggaatctgttttaggtggtgacgtgtattttggtgggtgttgtc 14302203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 372 - 426
Target Start/End: Complemental strand, 33110011 - 33109957
Alignment:
Q  372 gttttcgtgaaggagtctgttttaggtggtgacgtgtattttggtgggtattgtc 426  Q
    ||||||||||||| || ||||||||||| |||||||||||||||||||| |||||    
T  33110011 gttttcgtgaaggggtttgttttaggtgatgacgtgtattttggtgggtgttgtc 33109957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 373 - 426
Target Start/End: Complemental strand, 26045776 - 26045723
Alignment:
Q  373 ttttcgtgaaggagtctgttttaggtggtgacgtgtattttggtgggtattgtc 426  Q
    ||||| ||||| ||||||||||||||||||||||| |||||||||||| |||||    
T  26045776 ttttcatgaagaagtctgttttaggtggtgacgtgaattttggtgggtgttgtc 26045723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 372 - 420
Target Start/End: Complemental strand, 4914314 - 4914266
Alignment:
Q  372 gttttcgtgaaggagtctgttttaggtggtgacgtgtattttggtgggt 420  Q
    ||||||||||| ||||||| |||||||||||| ||||||||||||||||    
T  4914314 gttttcgtgaaagagtctgatttaggtggtgaagtgtattttggtgggt 4914266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 370 - 413
Target Start/End: Complemental strand, 21398135 - 21398092
Alignment:
Q  370 ttgttttcgtgaaggagtctgttttaggtggtgacgtgtatttt 413  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||    
T  21398135 ttgttttcgtgaaggcgtctgttttagatggtgacgtgtatttt 21398092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 379 - 418
Target Start/End: Complemental strand, 26405354 - 26405315
Alignment:
Q  379 tgaaggagtctgttttaggtggtgacgtgtattttggtgg 418  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  26405354 tgaagaagtctgttttaggtggtgacgtgtattttggtgg 26405315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 380 - 426
Target Start/End: Original strand, 10174956 - 10175002
Alignment:
Q  380 gaaggagtctgttttaggtggtgacgtgtattttggtgggtattgtc 426  Q
    |||||||||||||||||||||| ||||||| |||||||||| |||||    
T  10174956 gaaggagtctgttttaggtggttacgtgtactttggtgggtgttgtc 10175002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 372 - 425
Target Start/End: Original strand, 7682821 - 7682874
Alignment:
Q  372 gttttcgtgaaggagtctgttttaggtggtgacgtgtattttggtgggtattgt 425  Q
    ||||| ||||| |||||| ||||||||||||| |||||||||||||||| ||||    
T  7682821 gtttttgtgaaagagtctattttaggtggtgatgtgtattttggtgggtgttgt 7682874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 373 - 418
Target Start/End: Original strand, 8297740 - 8297785
Alignment:
Q  373 ttttcgtgaaggagtctgttttaggtggtgacgtgtattttggtgg 418  Q
    ||||| ||||||||| ||||||||||||||| ||||||||||||||    
T  8297740 ttttcttgaaggagtgtgttttaggtggtgatgtgtattttggtgg 8297785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 420
Target Start/End: Original strand, 8731169 - 8731215
Alignment:
Q  374 tttcgtgaaggagtctgttttaggtggtgacgtgtattttggtgggt 420  Q
    ||||||||| || ||||||||||||||||| || |||||||||||||    
T  8731169 tttcgtgaaagactctgttttaggtggtgatgtttattttggtgggt 8731215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 420
Target Start/End: Complemental strand, 7161836 - 7161783
Alignment:
Q  365 agtgtttgttttcgtgaaggagtctgttttaggtggtgacgtgtattttggtgggt 420  Q
    |||| ||||||| ||||||||||||||||||||| ||||  ||| |||||||||||    
T  7161836 agtgcttgtttttgtgaaggagtctgttttaggtagtga--tgtgttttggtgggt 7161783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 372 - 426
Target Start/End: Original strand, 34775139 - 34775193
Alignment:
Q  372 gttttcgtgaaggagtctgttttaggtggtgacgtgtattttggtgggtattgtc 426  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  34775139 gttttcgtgaaggagtctgttttaggtgatgacgtgtattttggtgggtgttgtc 34775193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 372 - 426
Target Start/End: Original strand, 46768443 - 46768497
Alignment:
Q  372 gttttcgtgaaggagtctgttttaggtggtgacgtgtattttggtgggtattgtc 426  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  46768443 gttttcgtgaaggagtctgttttaggtggtgacgtgaattttggtgggtgttgtc 46768497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 370 - 420
Target Start/End: Complemental strand, 6583067 - 6583017
Alignment:
Q  370 ttgttttcgtgaaggagtctgttttaggtggtgacgtgtattttggtgggt 420  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  6583067 ttgttctcgtgtaggagtctgttttaggtggtgacgtgtattttggtgggt 6583017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 374 - 427
Target Start/End: Complemental strand, 11439830 - 11439777
Alignment:
Q  374 tttcgtgaaggagtctgttttaggtggtgacgtgtattttggtgggtattgtct 427  Q
    |||||||||||  |||||||||||||||||||||||||||||||| | ||||||    
T  11439830 tttcgtgaagggatctgttttaggtggtgacgtgtattttggtggatgttgtct 11439777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 372 - 426
Target Start/End: Complemental strand, 32863360 - 32863306
Alignment:
Q  372 gttttcgtgaaggagtctgttttaggtggtgacgtgtattttggtgggtattgtc 426  Q
    ||||||||| |||| ||||||||||| |||||||||||| ||||||||| |||||    
T  32863360 gttttcgtggaggattctgttttaggcggtgacgtgtatgttggtgggtgttgtc 32863306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 372 - 426
Target Start/End: Original strand, 32882634 - 32882688
Alignment:
Q  372 gttttcgtgaaggagtctgttttaggtggtgacgtgtattttggtgggtattgtc 426  Q
    ||||||||||||||||| |||||||| ||||| || ||||||||||||| |||||    
T  32882634 gttttcgtgaaggagtcagttttaggcggtgatgtatattttggtgggtgttgtc 32882688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 420
Target Start/End: Original strand, 16577527 - 16577575
Alignment:
Q  372 gttttcgtgaaggagtctgttttaggtggtgacgtgtattttggtgggt 420  Q
    ||||||||||| |||||||||||||||| ||| || |||||||||||||    
T  16577527 gttttcgtgaaagagtctgttttaggtgatgatgtttattttggtgggt 16577575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 418
Target Start/End: Complemental strand, 38548888 - 38548844
Alignment:
Q  374 tttcgtgaaggagtctgttttaggtggtgacgtgtattttggtgg 418  Q
    ||||||||| |||||||||||||||||||| || |||||||||||    
T  38548888 tttcgtgaaagagtctgttttaggtggtgatgtttattttggtgg 38548844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 426
Target Start/End: Complemental strand, 10785275 - 10785221
Alignment:
Q  372 gttttcgtgaaggagtctgttttaggtggtgacgtgtattttggtgggtattgtc 426  Q
    |||||||||||||||||||||||| ||| | || ||||||||| ||||| |||||    
T  10785275 gttttcgtgaaggagtctgttttaagtgataacatgtattttgatgggtgttgtc 10785221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 379 - 413
Target Start/End: Original strand, 16149049 - 16149083
Alignment:
Q  379 tgaaggagtctgttttaggtggtgacgtgtatttt 413  Q
    |||||| ||||||||||||||||||||||||||||    
T  16149049 tgaaggtgtctgttttaggtggtgacgtgtatttt 16149083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 414
Target Start/End: Complemental strand, 41126307 - 41126261
Alignment:
Q  368 gtttgttttcgtgaaggagtctgttttaggtggtgacgtgtattttg 414  Q
    ||||||||||||||| | ||||||||||||||||||  |||||||||    
T  41126307 gtttgttttcgtgaatgcgtctgttttaggtggtgatatgtattttg 41126261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 417
Target Start/End: Complemental strand, 38544564 - 38544524
Alignment:
Q  377 cgtgaaggagtctgttttaggtggtgacgtgtattttggtg 417  Q
    |||||| |||||||||||||||||||| || ||||||||||    
T  38544564 cgtgaaagagtctgttttaggtggtgatgtttattttggtg 38544524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 49270188 - 49270224
Alignment:
Q  149 aaaaacacaagttccacattgaaaagcgataaagtct 185  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  49270188 aaaaacacaagttccacattaaaaagagataaagtct 49270224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 372 - 420
Target Start/End: Complemental strand, 37770462 - 37770414
Alignment:
Q  372 gttttcgtgaaggagtctgttttaggtggtgacgtgtattttggtgggt 420  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  37770462 gttttcgtgaaggagtctgttttaggtggtgacgtggattttggtgggt 37770414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 372 - 414
Target Start/End: Original strand, 12343085 - 12343127
Alignment:
Q  372 gttttcgtgaaggagtctgttttaggtggtgacgtgtattttg 414  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  12343085 gttttcgtgaaggagtctgttttaggtggtgacgtgtattttg 12343127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 372 - 426
Target Start/End: Original strand, 7696229 - 7696283
Alignment:
Q  372 gttttcgtgaaggagtctgttttaggtggtgacgtgtattttggtgggtattgtc 426  Q
    |||||||||||||||| | ||||||||||||| |||||||||||||||| |||||    
T  7696229 gttttcgtgaaggagtttattttaggtggtgatgtgtattttggtgggtgttgtc 7696283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 372 - 420
Target Start/End: Complemental strand, 41113551 - 41113503
Alignment:
Q  372 gttttcgtgaaggagtctgttttaggtggtgacgtgtattttggtgggt 420  Q
    ||||||||||||||||||||||||||| || |||| |||||||||||||    
T  41113551 gttttcgtgaaggagtctgttttaggtagtaacgtttattttggtgggt 41113503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 245
Target Start/End: Original strand, 8222541 - 8222638
Alignment:
Q  149 aaaaacacaagttccacattgaaaagc-gataaagtct-aaaatagtttataaagagtgacattactcatctaacaaggcgattttataaggatgagtt 245  Q
    |||||| |||||||||||||||||| | ||||| | || |||||||||||||||||||||||  ||||| || ||||| || |||| ||||||||||||    
T  8222541 aaaaacccaagttccacattgaaaaacagataaggcctgaaaatagtttataaagagtgaca-gactcaccttacaagtcggttttgtaaggatgagtt 8222638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 420
Target Start/End: Original strand, 4975012 - 4975060
Alignment:
Q  372 gttttcgtgaaggagtctgttttaggtggtgacgtgtattttggtgggt 420  Q
    |||||||||||| ||||||||||||||||||  ||||| ||||||||||    
T  4975012 gttttcgtgaagaagtctgttttaggtggtggtgtgtaatttggtgggt 4975060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 420
Target Start/End: Original strand, 4992920 - 4992968
Alignment:
Q  372 gttttcgtgaaggagtctgttttaggtggtgacgtgtattttggtgggt 420  Q
    |||||||||||| ||||||||||||||||||  ||||| ||||||||||    
T  4992920 gttttcgtgaagaagtctgttttaggtggtggtgtgtaatttggtgggt 4992968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 420
Target Start/End: Original strand, 387440 - 387488
Alignment:
Q  370 ttgttttcgtgaaggagtctgttttaggtggtgacgtgtattttggtgggt 420  Q
    ||||||| ||||||||||||||||||||||||||  ||| |||||||||||    
T  387440 ttgtttttgtgaaggagtctgttttaggtggtga--tgtgttttggtgggt 387488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 414
Target Start/End: Complemental strand, 16952200 - 16952154
Alignment:
Q  368 gtttgttttcgtgaaggagtctgttttaggtggtgacgtgtattttg 414  Q
    ||||||||||||||||| |||||||||| ||||||| || |||||||    
T  16952200 gtttgttttcgtgaaggcgtctgttttaagtggtgatgtttattttg 16952154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 414
Target Start/End: Complemental strand, 17022865 - 17022819
Alignment:
Q  368 gtttgttttcgtgaaggagtctgttttaggtggtgacgtgtattttg 414  Q
    ||||||||||||||||| |||||||||| ||||||| || |||||||    
T  17022865 gtttgttttcgtgaaggcgtctgttttaagtggtgatgtttattttg 17022819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 414
Target Start/End: Complemental strand, 17060171 - 17060125
Alignment:
Q  368 gtttgttttcgtgaaggagtctgttttaggtggtgacgtgtattttg 414  Q
    ||||||||||||||||| |||||||||| ||||||| || |||||||    
T  17060171 gtttgttttcgtgaaggcgtctgttttaagtggtgatgtttattttg 17060125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 420
Target Start/End: Complemental strand, 25504738 - 25504692
Alignment:
Q  374 tttcgtgaaggagtctgttttaggtggtgacgtgtattttggtgggt 420  Q
    ||||||||| || ||||||||||||||||| || |||||||||||||    
T  25504738 tttcgtgaaagactctgttttaggtggtgatgtttattttggtgggt 25504692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 426
Target Start/End: Complemental strand, 15126239 - 15126186
Alignment:
Q  374 tttcgtgaaggagtctgtttt-aggtggtgacgtgtattttggtgggtattgtc 426  Q
    ||||||||| |||| |||||| ||||||||| || |||||||||||||||||||    
T  15126239 tttcgtgaacgagtttgtttttaggtggtgatgtttattttggtgggtattgtc 15126186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 403
Target Start/End: Complemental strand, 22884963 - 22884934
Alignment:
Q  374 tttcgtgaaggagtctgttttaggtggtga 403  Q
    ||||||||||||||||||||||||||||||    
T  22884963 tttcgtgaaggagtctgttttaggtggtga 22884934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 413
Target Start/End: Complemental strand, 27879966 - 27879925
Alignment:
Q  372 gttttcgtgaaggagtctgttttaggtggtgacgtgtatttt 413  Q
    |||||| ||||||||||||||||||||||||| || ||||||    
T  27879966 gttttcctgaaggagtctgttttaggtggtgatgtttatttt 27879925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 374 - 420
Target Start/End: Original strand, 36976 - 37022
Alignment:
Q  374 tttcgtgaaggagtctgttttaggtggtgacgtgtattttggtgggt 420  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||    
T  36976 tttcgtgaaggagtctgttttaggtggtgacgtgtattttgttgggt 37022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 372 - 426
Target Start/End: Complemental strand, 10248380 - 10248326
Alignment:
Q  372 gttttcgtgaaggagtctgttttaggtggtgacgtgtattttggtgggtattgtc 426  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||| |||||    
T  10248380 gttttcgtgaaggagtttgttttaggtggtgacgtgtattttggcgggtgttgtc 10248326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 373 - 426
Target Start/End: Complemental strand, 17656548 - 17656495
Alignment:
Q  373 ttttcgtgaaggagtctgttttaggtggtgacgtgtattttggtgggtattgtc 426  Q
    ||||| |||||||||||||||||| |||||||||| |||||||||||| |||||    
T  17656548 ttttcttgaaggagtctgttttagatggtgacgtgaattttggtgggtgttgtc 17656495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 426
Target Start/End: Complemental strand, 8862438 - 8862382
Alignment:
Q  370 ttgttttcgtgaaggagtctgttttaggtggtgacgtgtattttggtgggtattgtc 426  Q
    ||||| ||||| | ||||| |||||||||||||||||||||||| |||||| |||||    
T  8862438 ttgttctcgtgtaagagtcagttttaggtggtgacgtgtatttttgtgggtgttgtc 8862382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 425
Target Start/End: Complemental strand, 43312452 - 43312399
Alignment:
Q  372 gttttcgtgaaggagtctgttttaggtggtgacgtgtattttggtgggtattgt 425  Q
    ||||| ||| ||||||||| ||||||||||||| ||||||||| ||||| ||||    
T  43312452 gtttttgtgtaggagtctgatttaggtggtgacatgtattttgatgggtgttgt 43312399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 374 - 420
Target Start/End: Original strand, 14194200 - 14194246
Alignment:
Q  374 tttcgtgaaggagtctgttttaggtggtgacgtgtattttggtgggt 420  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||    
T  14194200 tttcgtgatggagtctgttttaggtggtgacgtgtattttggtgggt 14194246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 372 - 424
Target Start/End: Original strand, 32010029 - 32010082
Alignment:
Q  372 gttttcgtgaaggagtctgttttaggtggtgacgtgtatttt-ggtgggtattg 424  Q
    |||||||||||||||||||||||||||||||| || |||||| |||||||||||    
T  32010029 gttttcgtgaaggagtctgttttaggtggtgatgtttattttgggtgggtattg 32010082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 372 - 427
Target Start/End: Complemental strand, 48893166 - 48893111
Alignment:
Q  372 gttttcgtgaaggagtctgttttaggtggtgacgtgtattttggtgggtattgtct 427  Q
    ||||| || ||||||||| |||||||||||||| ||||||||||||||| ||||||    
T  48893166 gtttttgtaaaggagtctcttttaggtggtgacatgtattttggtgggtgttgtct 48893111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 372 - 418
Target Start/End: Complemental strand, 33143764 - 33143718
Alignment:
Q  372 gttttcgtgaaggagtctgttttaggtggtgacgtgtattttggtgg 418  Q
    |||||||||||||||| |||||||||||||||||||| || ||||||    
T  33143764 gttttcgtgaaggagtttgttttaggtggtgacgtgttttatggtgg 33143718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 420
Target Start/End: Complemental strand, 50518898 - 50518854
Alignment:
Q  376 tcgtgaaggagtctgttttaggtggtgacgtgtattttggtgggt 420  Q
    ||||||||||||||||||||| |||||| |||||||||| |||||    
T  50518898 tcgtgaaggagtctgttttagatggtgaggtgtattttgttgggt 50518854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 427
Target Start/End: Original strand, 37123649 - 37123704
Alignment:
Q  372 gttttcgtgaaggagtctgttttaggtggtgacgtgtattttggtgggtattgtct 427  Q
    |||||||||||| ||||| |||||  |||||| |||||||||||||||| ||||||    
T  37123649 gttttcgtgaagaagtctattttatatggtgatgtgtattttggtgggtgttgtct 37123704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 388 - 426
Target Start/End: Complemental strand, 14280345 - 14280307
Alignment:
Q  388 ctgttttaggtggtgacgtgtattttggtgggtattgtc 426  Q
    |||||||||||||||||||||||||| |||||| |||||    
T  14280345 ctgttttaggtggtgacgtgtattttagtgggtgttgtc 14280307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 406
Target Start/End: Original strand, 14893216 - 14893249
Alignment:
Q  373 ttttcgtgaaggagtctgttttaggtggtgacgt 406  Q
    ||||| ||||||||||||||||||||||||||||    
T  14893216 ttttcttgaaggagtctgttttaggtggtgacgt 14893249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 426
Target Start/End: Original strand, 27399217 - 27399266
Alignment:
Q  377 cgtgaaggagtctgttttaggtggtgacgtgtattttggtgggtattgtc 426  Q
    |||||||||| |||||||||||| ||| || ||||||||||||| |||||    
T  27399217 cgtgaaggagcctgttttaggtgatgatgtttattttggtgggtgttgtc 27399266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 413
Target Start/End: Original strand, 4171012 - 4171052
Alignment:
Q  373 ttttcgtgaaggagtctgttttaggtggtgacgtgtatttt 413  Q
    ||||||||||||||||| ||||||||| |||||| ||||||    
T  4171012 ttttcgtgaaggagtctattttaggtgatgacgtatatttt 4171052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 373 - 426
Target Start/End: Complemental strand, 24324610 - 24324557
Alignment:
Q  373 ttttcgtgaaggagtctgttttaggtggtgacgtgtattttggtgggtattgtc 426  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| || |||||    
T  24324610 ttttcgtgaaggagtctgttttaagtggtgacgtgtattttggtgagtgttgtc 24324557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 365 - 426
Target Start/End: Original strand, 23983465 - 23983526
Alignment:
Q  365 agtgtttgttttcgtgaaggagtctgttttaggtggtgacgtgtattttggtgggtattgtc 426  Q
    |||| ||||||||||||| |||||||||||||||||||  || ||||||||||||| |||||    
T  23983465 agtggttgttttcgtgaatgagtctgttttaggtggtggtgtttattttggtgggtgttgtc 23983526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 418
Target Start/End: Complemental strand, 22567941 - 22567897
Alignment:
Q  374 tttcgtgaaggagtctgttttaggtggtgacgtgtattttggtgg 418  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||    
T  22567941 tttcgtgaaagagtctgttttaggtggtgatgtgtattttggtgg 22567897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 426
Target Start/End: Complemental strand, 28534340 - 28534288
Alignment:
Q  374 tttcgtgaaggagtctgttttaggtggtgacgtgtattttggtgggtattgtc 426  Q
    ||||||||| |||||||||||||||||||| || ||||||||||||| |||||    
T  28534340 tttcgtgaaagagtctgttttaggtggtgatgtttattttggtgggtgttgtc 28534288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 379 - 418
Target Start/End: Complemental strand, 6492937 - 6492898
Alignment:
Q  379 tgaaggagtctgttttaggtggtgacgtgtattttggtgg 418  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  6492937 tgaaggagtctgttttaggtggtgacgtgaattttggtgg 6492898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 365 - 418
Target Start/End: Original strand, 16954750 - 16954803
Alignment:
Q  365 agtgtttgttttcgtgaaggagtctgttttaggtggtgacgtgtattttggtgg 418  Q
    |||| |||||||| |||||  |||||||||||||||||||||||||||| ||||    
T  16954750 agtggttgttttcttgaagatgtctgttttaggtggtgacgtgtatttttgtgg 16954803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 418
Target Start/End: Original strand, 1321055 - 1321109
Alignment:
Q  365 agtgtttgttttcgtgaa-ggagtctgttttaggtggtgacgtgtattttggtgg 418  Q
    |||| ||| ||||||||| || |||||||||||||||||| ||||||||||||||    
T  1321055 agtggttgctttcgtgaaaggggtctgttttaggtggtgatgtgtattttggtgg 1321109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 31924333 - 31924381
Alignment:
Q  156 caagttccacattgaaaagcgataaagtc-taaaatagtttataaagag 203  Q
    |||||||||||||||||||  |||| ||| |||||||||||||||||||    
T  31924333 caagttccacattgaaaagatataaggtcttaaaatagtttataaagag 31924381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 370 - 426
Target Start/End: Complemental strand, 38637049 - 38636993
Alignment:
Q  370 ttgttttcgtgaaggagtctgttttaggtggtgacgtgtattttggtgggtattgtc 426  Q
    |||||||||||||||||| |||||||||||||||| |||||||| |||||| |||||    
T  38637049 ttgttttcgtgaaggagtttgttttaggtggtgacatgtattttcgtgggtgttgtc 38636993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 374 - 420
Target Start/End: Complemental strand, 22810972 - 22810926
Alignment:
Q  374 tttcgtgaaggagtctgttttaggtggtgacgtgtattttggtgggt 420  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||||    
T  22810972 tttcgtgaagcagtctgttttaggaggtgacgtgtattttggtgggt 22810926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 372 - 426
Target Start/End: Original strand, 49747795 - 49747849
Alignment:
Q  372 gttttcgtgaaggagtctgttttaggtggtgacgtgtattttggtgggtattgtc 426  Q
    ||||||||||| ||||||||||||||||||||| || |||||||||||| |||||    
T  49747795 gttttcgtgaaagagtctgttttaggtggtgacatgaattttggtgggtgttgtc 49747849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 373 - 426
Target Start/End: Original strand, 25753442 - 25753495
Alignment:
Q  373 ttttcgtgaaggagtctgttttaggtggtgacgtgtattttggtgggtattgtc 426  Q
    ||||||||||||||| ||||||||||| |||| ||||||||||||||| |||||    
T  25753442 ttttcgtgaaggagtttgttttaggtgatgacttgtattttggtgggtgttgtc 25753495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 372 - 420
Target Start/End: Complemental strand, 19311179 - 19311131
Alignment:
Q  372 gttttcgtgaaggagtctgttttaggtggtgacgtgtattttggtgggt 420  Q
    |||||||||||||| |||||||  |||||||||||||||||||||||||    
T  19311179 gttttcgtgaaggaatctgtttatggtggtgacgtgtattttggtgggt 19311131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 260
Target Start/End: Original strand, 11395012 - 11395110
Alignment:
Q  163 cacattgaaaagcgataaagtctaaaat-agtttataaagagtgacattactcatctaacaaggcgattttataaggatgagttagacataatataaaa 260  Q
    ||||||||| || ||||| |||| |||  |||||||||||||||||||| |||| || ||||| || ||||  |||||||||||||||  |||||||||    
T  11395012 cacattgaatagtgataaggtctgaaacgagtttataaagagtgacattcctcaacttacaagtcggtttttgaaggatgagttagactcaatataaaa 11395110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 260
Target Start/End: Original strand, 11404739 - 11404837
Alignment:
Q  163 cacattgaaaagcgataaagtctaaaat-agtttataaagagtgacattactcatctaacaaggcgattttataaggatgagttagacataatataaaa 260  Q
    ||||||||| || ||||| |||| |||  |||||||||||||||||||| |||| || ||||| || ||||  |||||||||||||||  |||||||||    
T  11404739 cacattgaatagtgataaggtctgaaacgagtttataaagagtgacattcctcaacttacaagtcggtttttgaaggatgagttagactcaatataaaa 11404837  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 418
Target Start/End: Complemental strand, 39420851 - 39420803
Alignment:
Q  370 ttgttttcgtgaaggagtctgttttaggtggtgacgtgtattttggtgg 418  Q
    ||||| ||||| ||||||| ||||||| |||||||||||||||||||||    
T  39420851 ttgttctcgtgtaggagtcagttttagatggtgacgtgtattttggtgg 39420803  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 426
Target Start/End: Complemental strand, 41117783 - 41117727
Alignment:
Q  370 ttgttttcgtgaaggagtctgttttaggtggtgacgtgtattttggtgggtattgtc 426  Q
    ||||||||||| | ||||||||| ||||||||||  ||||||||||||||| |||||    
T  41117783 ttgttttcgtgcatgagtctgttctaggtggtgatatgtattttggtgggtgttgtc 41117727  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 414
Target Start/End: Original strand, 42719437 - 42719478
Alignment:
Q  373 ttttcgtgaaggagtctgttttaggtggtgacgtgtattttg 414  Q
    ||||||||||||||||| |||||||||||||| ||| |||||    
T  42719437 ttttcgtgaaggagtctattttaggtggtgacatgttttttg 42719478  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 420
Target Start/End: Original strand, 49528346 - 49528387
Alignment:
Q  379 tgaaggagtctgttttaggtggtgacgtgtattttggtgggt 420  Q
    ||||||||||| ||||||||| |||||||| |||||||||||    
T  49528346 tgaaggagtctattttaggtgatgacgtgttttttggtgggt 49528387  T

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Target: scaffold1384 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1384
Description:

Target: scaffold1384; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 365 - 425
Target Start/End: Complemental strand, 1476 - 1416
Alignment:
Q  365 agtgtttgttttcgtgaaggagtctgttttaggtggtgacgtgtattttggtgggtattgt 425  Q
    |||| ||||| ||||| ||||||| |||||||||||||||||||||||| |||||| ||||    
T  1476 agtggttgttctcgtgtaggagtcagttttaggtggtgacgtgtatttttgtgggttttgt 1416  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 373 - 418
Target Start/End: Complemental strand, 15120415 - 15120370
Alignment:
Q  373 ttttcgtgaaggagtctgttttaggtggtgacgtgtattttggtgg 418  Q
    |||| ||||| |||||||||||||||||||| ||||||||||||||    
T  15120415 tttttgtgaatgagtctgttttaggtggtgatgtgtattttggtgg 15120370  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 426
Target Start/End: Complemental strand, 17278313 - 17278261
Alignment:
Q  374 tttcgtgaaggagtctgttttaggtggtgacgtgtattttggtgggtattgtc 426  Q
    ||||||||||||||||| |||||||||| | || ||||||||||||| |||||    
T  17278313 tttcgtgaaggagtctgatttaggtggtaatgtttattttggtgggtgttgtc 17278261  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 426
Target Start/End: Complemental strand, 32935156 - 32935102
Alignment:
Q  372 gttttcgtgaaggagtctgttttaggtggtgacgtgtattttggtgggtattgtc 426  Q
    |||||||| ||||||||| ||||||||||||  || ||||||||||||| |||||    
T  32935156 gttttcgttaaggagtctattttaggtggtggtgtttattttggtgggtgttgtc 32935102  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 418
Target Start/End: Complemental strand, 16180727 - 16180683
Alignment:
Q  374 tttcgtgaaggagtctgttttaggtggtgacgtgtattttggtgg 418  Q
    |||| |||||| |||||||||||||||||| || |||||||||||    
T  16180727 tttcttgaaggggtctgttttaggtggtgatgtttattttggtgg 16180683  T

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Target: scaffold0063 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 415
Target Start/End: Original strand, 58396 - 58439
Alignment:
Q  372 gttttcgtgaaggagtctgttttaggtggtgacgtgtattttgg 415  Q
    ||||||||||||||||||||||| |||||||| ||||| |||||    
T  58396 gttttcgtgaaggagtctgtttttggtggtgatgtgtactttgg 58439  T

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Target: scaffold1613 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 417
Target Start/End: Complemental strand, 843 - 803
Alignment:
Q  377 cgtgaaggagtctgttttaggtggtgacgtgtattttggtg 417  Q
    |||||| |||||||||||||||||||| || ||||||||||    
T  843 cgtgaaagagtctgttttaggtggtgatgtttattttggtg 803  T

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