View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1698_high_8 (Length: 398)

Name: NF1698_high_8
Description: NF1698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1698_high_8
NF1698_high_8
[»] chr8 (36 HSPs)
chr8 (1-106)||(36912375-36912480)
chr8 (1-104)||(18029507-18029610)
chr8 (1-104)||(30470826-30470929)
chr8 (1-79)||(41477168-41477246)
chr8 (1-106)||(26632161-26632266)
chr8 (1-106)||(34955674-34955778)
chr8 (1-94)||(29637163-29637256)
chr8 (1-61)||(42860717-42860777)
chr8 (1-80)||(8609989-8610068)
chr8 (9-94)||(35931832-35931918)
chr8 (1-74)||(17741702-17741775)
chr8 (1-81)||(38584902-38584982)
chr8 (1-71)||(35099428-35099499)
chr8 (1-79)||(4625502-4625580)
chr8 (1-59)||(13814952-13815010)
chr8 (1-94)||(43524398-43524492)
chr8 (1-79)||(30289738-30289818)
chr8 (1-61)||(5212294-5212354)
chr8 (1-61)||(5735290-5735350)
chr8 (1-92)||(43525096-43525188)
chr8 (1-94)||(1958187-1958281)
chr8 (1-94)||(12272489-12272583)
chr8 (1-60)||(42859929-42859989)
chr8 (1-79)||(40283460-40283539)
chr8 (1-62)||(23353191-23353252)
chr8 (1-81)||(39811066-39811147)
chr8 (1-61)||(45101032-45101093)
chr8 (1-79)||(26244482-26244561)
chr8 (23-81)||(24431893-24431951)
chr8 (1-94)||(43618356-43618449)
chr8 (1-61)||(15053635-15053696)
chr8 (1-81)||(7990414-7990494)
chr8 (1-59)||(31129510-31129569)
chr8 (23-92)||(7511887-7511955)
chr8 (20-60)||(44149874-44149914)
chr8 (1-60)||(44503171-44503231)
[»] chr5 (38 HSPs)
chr5 (1-107)||(41263319-41263425)
chr5 (1-104)||(8176311-8176414)
chr5 (1-104)||(41153014-41153117)
chr5 (1-106)||(25032311-25032416)
chr5 (1-94)||(14278799-14278892)
chr5 (1-61)||(4577008-4577068)
chr5 (1-59)||(8681296-8681354)
chr5 (1-60)||(34918486-34918543)
chr5 (4-63)||(25652814-25652873)
chr5 (1-71)||(31013851-31013922)
chr5 (1-63)||(15972568-15972630)
chr5 (1-94)||(19241286-19241380)
chr5 (1-94)||(27942461-27942555)
chr5 (1-94)||(32976583-32976677)
chr5 (1-106)||(37882439-37882542)
chr5 (1-94)||(40888864-40888958)
chr5 (9-94)||(42317858-42317944)
chr5 (1-63)||(27407752-27407816)
chr5 (1-69)||(9274458-9274525)
chr5 (1-61)||(10569818-10569878)
chr5 (1-79)||(3454721-3454800)
chr5 (1-104)||(42608052-42608155)
chr5 (1-61)||(25670913-25670974)
chr5 (1-93)||(36572427-36572520)
chr5 (1-80)||(13479831-13479911)
chr5 (1-61)||(42807007-42807068)
chr5 (1-45)||(11954796-11954840)
chr5 (4-94)||(7650973-7651064)
chr5 (17-60)||(23649192-23649235)
chr5 (17-60)||(23809336-23809379)
chr5 (1-79)||(29619021-29619100)
chr5 (18-68)||(177042-177092)
chr5 (1-106)||(4938143-4938249)
chr5 (1-59)||(12912875-12912933)
chr5 (1-82)||(30648120-30648202)
chr5 (1-60)||(27407049-27407110)
chr5 (23-79)||(39008465-39008521)
chr5 (23-59)||(39238419-39238455)
[»] chr2 (34 HSPs)
chr2 (1-104)||(37245463-37245566)
chr2 (1-94)||(6362926-6363019)
chr2 (1-106)||(30822591-30822696)
chr2 (1-104)||(12854982-12855085)
chr2 (1-79)||(927900-927978)
chr2 (1-81)||(1987104-1987184)
chr2 (1-94)||(1073091-1073185)
chr2 (1-94)||(14152075-14152169)
chr2 (1-94)||(24997053-24997146)
chr2 (1-74)||(9074233-9074305)
chr2 (1-57)||(31192992-31193048)
chr2 (4-94)||(8852030-8852120)
chr2 (1-79)||(17485804-17485883)
chr2 (1-94)||(4296779-4296872)
chr2 (1-80)||(22351622-22351702)
chr2 (1-80)||(43021727-43021807)
chr2 (23-94)||(7588535-7588606)
chr2 (1-59)||(36209482-36209541)
chr2 (1-60)||(38901726-38901785)
chr2 (23-69)||(1308728-1308774)
chr2 (1-71)||(39434020-39434090)
chr2 (9-62)||(2780753-2780806)
chr2 (1-93)||(9117785-9117878)
chr2 (1-70)||(31174194-31174262)
chr2 (4-79)||(5146722-5146798)
chr2 (23-94)||(17929286-17929357)
chr2 (1-79)||(39490130-39490209)
chr2 (1-90)||(13151492-13151582)
chr2 (9-94)||(44279964-44280050)
chr2 (11-80)||(6333396-6333465)
chr2 (9-68)||(14382965-14383025)
chr2 (1-57)||(36855782-36855838)
chr2 (1-59)||(7763495-7763554)
chr2 (17-61)||(36526826-36526870)
[»] chr7 (30 HSPs)
chr7 (1-106)||(22737603-22737708)
chr7 (1-107)||(22191179-22191284)
chr7 (1-61)||(21654850-21654910)
chr7 (1-79)||(24793477-24793555)
chr7 (42-104)||(37888513-37888575)
chr7 (1-61)||(48984911-48984971)
chr7 (1-94)||(36518486-36518580)
chr7 (1-79)||(38970017-38970097)
chr7 (4-76)||(25218819-25218891)
chr7 (1-94)||(33078792-33078886)
chr7 (1-94)||(47159502-47159595)
chr7 (1-61)||(39769733-39769794)
chr7 (1-61)||(43571102-43571162)
chr7 (1-59)||(30720126-30720185)
chr7 (1-94)||(5813070-5813163)
chr7 (1-94)||(30566571-30566665)
chr7 (1-94)||(35029116-35029209)
chr7 (4-61)||(114494-114551)
chr7 (1-57)||(33508533-33508590)
chr7 (1-57)||(40302498-40302555)
chr7 (9-68)||(42881355-42881415)
chr7 (1-60)||(35193127-35193186)
chr7 (9-93)||(28318058-28318143)
chr7 (4-60)||(38351584-38351641)
chr7 (1-61)||(25038601-25038661)
chr7 (1-79)||(45549626-45549705)
chr7 (4-81)||(43202150-43202228)
chr7 (1-94)||(37951718-37951814)
chr7 (1-53)||(26013207-26013258)
chr7 (23-79)||(32130301-32130357)
[»] chr3 (62 HSPs)
chr3 (1-74)||(50017045-50017118)
chr3 (1-106)||(46572933-46573038)
chr3 (1-79)||(42601748-42601826)
chr3 (1-81)||(41890520-41890599)
chr3 (1-76)||(50033657-50033732)
chr3 (1-106)||(25790782-25790887)
chr3 (1-81)||(25832732-25832811)
chr3 (1-73)||(49823178-49823250)
chr3 (1-94)||(50415837-50415931)
chr3 (1-74)||(42601513-42601585)
chr3 (7-94)||(7008027-7008115)
chr3 (1-69)||(49147296-49147364)
chr3 (1-61)||(51427105-51427165)
chr3 (1-94)||(138947-139041)
chr3 (1-94)||(29701654-29701748)
chr3 (1-104)||(20139322-20139426)
chr3 (1-61)||(33934996-33935056)
chr3 (3-71)||(35424019-35424087)
chr3 (9-94)||(4045952-4046038)
chr3 (1-94)||(5845147-5845240)
chr3 (1-94)||(17466488-17466581)
chr3 (1-106)||(28155235-28155341)
chr3 (1-94)||(30418436-30418530)
chr3 (9-94)||(32120453-32120539)
chr3 (1-94)||(43473862-43473956)
chr3 (9-94)||(44084281-44084367)
chr3 (1-94)||(47144146-47144239)
chr3 (1-58)||(7521145-7521202)
chr3 (2-94)||(12974640-12974733)
chr3 (1-109)||(25450642-25450740)
chr3 (4-68)||(27847407-27847472)
chr3 (1-76)||(33795503-33795575)
chr3 (1-80)||(6048703-6048783)
chr3 (1-57)||(33748694-33748750)
chr3 (1-61)||(35853200-35853260)
chr3 (1-61)||(43022653-43022713)
chr3 (1-61)||(49710397-49710457)
chr3 (1-80)||(51999244-51999324)
chr3 (1-79)||(26165561-26165640)
chr3 (1-59)||(46123933-46123992)
chr3 (1-106)||(37410427-37410522)
chr3 (1-68)||(6832382-6832450)
chr3 (1-79)||(11908006-11908085)
chr3 (16-79)||(30692435-30692497)
chr3 (4-94)||(47701073-47701164)
chr3 (17-68)||(50734014-50734065)
chr3 (17-68)||(50778790-50778841)
chr3 (23-80)||(35472656-35472713)
chr3 (9-61)||(41183279-41183332)
chr3 (1-61)||(28410399-28410459)
chr3 (1-60)||(37183844-37183904)
chr3 (9-80)||(42560887-42560959)
chr3 (1-69)||(49407345-49407413)
chr3 (1-58)||(15493830-15493885)
chr3 (11-57)||(50176103-50176149)
chr3 (1-94)||(55026711-55026805)
chr3 (23-80)||(10426461-10426518)
chr3 (29-94)||(31170261-31170326)
chr3 (23-80)||(36178734-36178791)
chr3 (1-34)||(49357505-49357538)
chr3 (17-57)||(744225-744265)
chr3 (25-57)||(53722116-53722148)
[»] scaffold0100 (1 HSPs)
scaffold0100 (1-103)||(30546-30648)
[»] chr1 (39 HSPs)
chr1 (1-106)||(44651030-44651134)
chr1 (1-93)||(3755036-3755128)
chr1 (1-81)||(44334270-44334350)
chr1 (1-76)||(8464085-8464160)
chr1 (1-106)||(45239095-45239200)
chr1 (1-75)||(17783364-17783438)
chr1 (1-61)||(44451278-44451338)
chr1 (1-61)||(643830-643890)
chr1 (11-79)||(41542313-41542381)
chr1 (9-94)||(2478343-2478429)
chr1 (4-93)||(8468293-8468383)
chr1 (1-94)||(27630467-27630560)
chr1 (1-94)||(31468102-31468195)
chr1 (1-94)||(37420351-37420444)
chr1 (1-68)||(19578917-19578985)
chr1 (9-69)||(36302975-36303035)
chr1 (1-80)||(48388115-48388195)
chr1 (1-69)||(48729315-48729383)
chr1 (1-79)||(29523686-29523765)
chr1 (1-59)||(48404333-48404392)
chr1 (1-94)||(36230325-36230419)
chr1 (1-61)||(30878551-30878612)
chr1 (1-69)||(35847128-35847197)
chr1 (1-61)||(45456158-45456219)
chr1 (1-58)||(52933776-52933833)
chr1 (1-58)||(52941411-52941468)
chr1 (1-68)||(31159381-31159449)
chr1 (1-60)||(20584859-20584918)
chr1 (1-107)||(51494479-51494586)
chr1 (4-68)||(45623540-45623605)
chr1 (2-61)||(23092770-23092830)
chr1 (1-45)||(39149093-39149137)
chr1 (1-92)||(43738950-43739042)
chr1 (1-59)||(14096694-14096753)
chr1 (1-59)||(37646567-37646626)
chr1 (1-71)||(44929298-44929368)
chr1 (1-60)||(37822571-37822632)
chr1 (9-68)||(29919364-29919424)
chr1 (1-60)||(37691297-37691357)
[»] chr6 (19 HSPs)
chr6 (1-73)||(29428526-29428598)
chr6 (1-106)||(631477-631582)
chr6 (1-94)||(8669860-8669954)
chr6 (1-74)||(6380497-6380569)
chr6 (1-68)||(10883868-10883936)
chr6 (1-94)||(197775-197868)
chr6 (1-86)||(8660537-8660623)
chr6 (1-94)||(34328252-34328345)
chr6 (1-61)||(6725633-6725693)
chr6 (1-68)||(12480313-12480381)
chr6 (1-81)||(22627819-22627899)
chr6 (3-57)||(32359753-32359807)
chr6 (1-94)||(34838551-34838645)
chr6 (1-94)||(30446214-30446308)
chr6 (17-94)||(17961288-17961364)
chr6 (1-63)||(12512914-12512977)
chr6 (23-61)||(24348436-24348474)
chr6 (1-61)||(12501835-12501896)
chr6 (1-69)||(24933291-24933359)
[»] scaffold0012 (1 HSPs)
scaffold0012 (1-79)||(124001-124077)
[»] chr4 (45 HSPs)
chr4 (1-104)||(47750233-47750335)
chr4 (1-94)||(23540433-23540527)
chr4 (30-107)||(35394874-35394951)
chr4 (1-69)||(39049091-39049159)
chr4 (1-94)||(34199276-34199370)
chr4 (1-94)||(48506613-48506707)
chr4 (1-57)||(31848782-31848838)
chr4 (1-94)||(6290571-6290665)
chr4 (1-94)||(33077881-33077974)
chr4 (1-94)||(39113763-39113856)
chr4 (1-93)||(40721007-40721100)
chr4 (1-69)||(12158134-12158202)
chr4 (1-61)||(53184104-53184164)
chr4 (1-69)||(54356904-54356972)
chr4 (1-79)||(48403907-48403986)
chr4 (9-94)||(3618468-3618554)
chr4 (1-94)||(46917518-46917611)
chr4 (1-94)||(56053988-56054082)
chr4 (1-73)||(2215289-2215362)
chr4 (1-61)||(33604661-33604722)
chr4 (1-80)||(3533314-3533394)
chr4 (1-73)||(10089840-10089911)
chr4 (1-61)||(39533289-39533349)
chr4 (1-79)||(45081419-45081498)
chr4 (11-81)||(55933-56003)
chr4 (1-82)||(8991766-8991848)
chr4 (1-71)||(19409125-19409195)
chr4 (1-94)||(28899303-28899397)
chr4 (1-75)||(40596770-40596844)
chr4 (5-61)||(38173559-38173616)
chr4 (1-104)||(23389936-23390040)
chr4 (9-68)||(55560494-55560554)
chr4 (1-79)||(35809149-35809228)
chr4 (1-59)||(52017350-52017409)
chr4 (1-60)||(55408577-55408636)
chr4 (1-93)||(16020819-16020912)
chr4 (1-68)||(33523267-33523335)
chr4 (1-79)||(13094397-13094476)
chr4 (23-61)||(4981513-4981551)
chr4 (24-86)||(16175046-16175108)
chr4 (1-71)||(33526711-33526781)
chr4 (1-61)||(13110565-13110626)
chr4 (4-81)||(34564108-34564185)
chr4 (23-79)||(17329943-17329998)
chr4 (23-59)||(19272789-19272825)
[»] scaffold0054 (1 HSPs)
scaffold0054 (1-82)||(57750-57832)
[»] scaffold0362 (1 HSPs)
scaffold0362 (1-61)||(5330-5391)
[»] scaffold0016 (1 HSPs)
scaffold0016 (1-59)||(66079-66138)


Alignment Details
Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 36)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 36912480 - 36912375
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattggggatg 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| | |||||||||||||||| |||| ||||||||||||||    
T  36912480 ttgaatgagtgttgaataagagagagaaaatgatgtagagtgttgggaattgaaaaagtgggtgttgaatggtgttgaatatgttgaaccattggggatg 36912381  T
Q  101 gtctta 106  Q
    ||||||    
T  36912380 gtctta 36912375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 18029507 - 18029610
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattggggatg 100  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||| | | ||||||||||||||||||| ||||||||| ||||    
T  18029507 ttgaatgagtgttgaataagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgtcgaatggtgttgaatgtgttgaaccattggagatg 18029606  T
Q  101 gtct 104  Q
    ||||    
T  18029607 gtct 18029610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 30470826 - 30470929
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattggggatg 100  Q
    ||||||||||||||||||||| ||||||||||| || ||||||||| |||||||||| ||||| |||||||||||||||||   | ||||||||||||||    
T  30470826 ttgaatgagtgttgaataagagagagaaaatgacgtggagtgttgggaattgaaaaaatggatcttgaatggtgttgaatggtgtaaaccattggggatg 30470925  T
Q  101 gtct 104  Q
    ||||    
T  30470926 gtct 30470929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 41477246 - 41477168
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaa 79  Q
    ||||||||||||||||||||| ||||||||||| || ||||||||| |||||||||||||||| |||||||||||||||    
T  41477246 ttgaatgagtgttgaataagagagagaaaatgacgtggagtgttgggaattgaaaaagtggatgttgaatggtgttgaa 41477168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 26632161 - 26632266
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattggggatg 100  Q
    ||||||||||||||||||||| ||||||||||| || | ||||||| |||||||||||||| | |||||||||||||||||   | |||||||| |||||    
T  26632161 ttgaatgagtgttgaataagagagagaaaatgacgtggcgtgttgggaattgaaaaagtgggtgttgaatggtgttgaatggtgtaaaccattgaggatg 26632260  T
Q  101 gtctta 106  Q
    ||||||    
T  26632261 gtctta 26632266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 34955674 - 34955778
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattggggatg 100  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||| | ||||||||||||||| |     ||||||||||||||    
T  34955674 ttgaatgagtgttgaataagagagagaaaatgatgtggagtgttgggaattgaaaaagtgg-tgttgaatggtgttgaaagaaaaaaaccattggggatg 34955772  T
Q  101 gtctta 106  Q
    ||||||    
T  34955773 gtctta 34955778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 29637163 - 29637256
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    ||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||| ||||| || | || |||||||||| ||| |||||||    
T  29637163 ttgaatgagtgttaaataagaaagagaaaattatgtggagtgttggaaattgaaaaaatggatgttaagtgttgttgaatgtttttcaccattg 29637256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 42860777 - 42860717
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtgg 61  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  42860777 ttgaatgagtgttgaataagaaagagaaaatgatgtggagtgttgggaattgaaaaagtgg 42860717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 8609989 - 8610068
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaat 80  Q
    ||||||||||||||||||| | |||||||||||| | ||||||||| ||||||||||||| || ||||||||||||||||    
T  8609989 ttgaatgagtgttgaataaaagagagaaaatgatatggagtgttgggaattgaaaaagtgaatgttgaatggtgttgaat 8610068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 9 - 94
Target Start/End: Complemental strand, 35931918 - 35931832
Alignment:
Q  9 gtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    ||||||||| |||| |||||||||||||| |||||||||||||||||||||||||| ||||| | |||||||| ||||| |||||||    
T  35931918 gtgttgaattaagagagagaaaatgatgtggagtgttggaaattgaaaaagtggatgttgaaggttgttgaatttgttttaccattg 35931832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 17741775 - 17741702
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtg 74  Q
    |||||||||| |||||||||| |||||||||||||| |||| |||| |||||||||||||||| ||||||||||    
T  17741775 ttgaatgagtattgaataagagagagaaaatgatgtggagtcttgggaattgaaaaagtggatgttgaatggtg 17741702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 38584902 - 38584982
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatg 81  Q
    ||||| ||||||||||||||| ||||||||||| || ||||||||| |||||||||||||  | |||||||||||||||||    
T  38584902 ttgaacgagtgttgaataagagagagaaaatgacgtggagtgttgggaattgaaaaagtgtgtgttgaatggtgttgaatg 38584982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 35099499 - 35099428
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatg 71  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||| | |||||||    
T  35099499 ttgaatgagtgttgaattaagagagagaaaatgatgtagagtgttgggaattgaaaaagtgggtgttgaatg 35099428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 4625502 - 4625580
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaa 79  Q
    ||||||||||||||||||||| ||||||||| || | ||||||||| |||||||||||||  | |||||||||||||||    
T  4625502 ttgaatgagtgttgaataagagagagaaaataatttggagtgttgggaattgaaaaagtgagtgttgaatggtgttgaa 4625580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 13815010 - 13814952
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagt 59  Q
    |||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  13815010 ttgaattagtgttgaataagagagagaaaatgatgtggagtgttggaaattgaaaaagt 13814952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 43524398 - 43524492
Alignment:
Q  1 ttgaatgagtgttgaataa-gaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    ||||||||||||||||| | || |||||||||||||| ||||||||| |||||||||||||||| ||||| ||| |||||  | |||||||||||    
T  43524398 ttgaatgagtgttgaattatgagagagaaaatgatgtggagtgttgggaattgaaaaagtggatgttgaagggtattgaaattttttaaccattg 43524492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 30289738 - 30289818
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattg--aaaaagtggattttgaatggtgttgaa 79  Q
    ||||||| || |||||||||| |||||||||||||||||||||||  |||||  ||||||||||| |||||||||||||||    
T  30289738 ttgaatgtgtattgaataagagagagaaaatgatgtagagtgttgagaattgaaaaaaagtggatattgaatggtgttgaa 30289818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 5212354 - 5212294
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtgg 61  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||| |||| |||||||||    
T  5212354 ttgaatgagtgttgaataagagagagaaaatgatgtggagtgttgggaattaaaaaagtgg 5212294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 5735350 - 5735290
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtgg 61  Q
    ||||||||||||||||||||| |||||||||||||| |||| ||| |||||||||||||||    
T  5735350 ttgaatgagtgttgaataagagagagaaaatgatgtcgagtattgaaaattgaaaaagtgg 5735290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 43525096 - 43525188
Alignment:
Q  1 ttgaatgagtgttgaataagaa-agagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccat 92  Q
    ||||||||||||||||| | || |||||||||||||| |||||||||||||||||||||||| | ||||  | |||||||| ||||| |||||    
T  43525096 ttgaatgagtgttgaattaaaagagagaaaatgatgtggagtgttggaaattgaaaaagtgggtgttgagggttgttgaatttgttttaccat 43525188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 1958187 - 1958281
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    ||||||| ||||||||| |||| |||||||||||||| ||||||||| |||||||||||||| | ||||| | | |||||||| ||| |||||||    
T  1958187 ttgaatgggtgttgaattaagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaaggttattgaatgtattttaccattg 1958281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 12272489 - 12272583
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    ||||||||||||||||| |||| ||||||||||| || |||||||| ||||||||||||||||| ||||  | |||||||| | ||| |||||||    
T  12272489 ttgaatgagtgttgaattaagagagagaaaatgaagtggagtgttgaaaattgaaaaagtggatgttgagggttgttgaatttattttaccattg 12272583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 42859989 - 42859929
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtg 60  Q
    ||||||||||||||||| |||| |||||||||||||| ||||||||| |||||||||||||    
T  42859989 ttgaatgagtgttgaattaagagagagaaaatgatgtggagtgttgggaattgaaaaagtg 42859929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 40283539 - 40283460
Alignment:
Q  1 ttgaatgagtgttgaataa-gaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaa 79  Q
    ||||||| ||||||||| | || |||||||||||||| ||||||||| |||||||||||||||| ||||| ||| |||||    
T  40283539 ttgaatgggtgttgaattatgagagagaaaatgatgtggagtgttgggaattgaaaaagtggatgttgaaaggtattgaa 40283460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 23353191 - 23353252
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtgga 62  Q
    |||||||| |||| ||||||| |||||||  ||||| |||||||||||||||||||||||||    
T  23353191 ttgaatgaatgttaaataagagagagaaagggatgtggagtgttggaaattgaaaaagtgga 23353252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 39811066 - 39811147
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtg-ttggaaattgaaaaagtggattttgaatggtgttgaatg 81  Q
    ||||||||||||||||||||| ||| |||||||||| ||||| | |||| |  ||||||||| | |||||||||||||||||    
T  39811066 ttgaatgagtgttgaataagagagataaaatgatgtggagtgctaggaattaaaaaaagtgggtgttgaatggtgttgaatg 39811147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 45101032 - 45101093
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtgg 61  Q
    ||||||| ||||||||| |||| |||||||||||||| ||||||||| ||||||||||||||    
T  45101032 ttgaatgggtgttgaattaagagagagaaaatgatgtggagtgttgggaattgaaaaagtgg 45101093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 26244561 - 26244482
Alignment:
Q  1 ttgaatgagtgttgaataa-gaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaa 79  Q
    ||||||| ||||||||| | || |||||||||||||| ||||||||| ||||||||||||| || ||||| ||| |||||    
T  26244561 ttgaatgtgtgttgaattatgagagagaaaatgatgtggagtgttgggaattgaaaaagtgaatgttgaagggtattgaa 26244482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 24431893 - 24431951
Alignment:
Q  23 agagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatg 81  Q
    ||||||| |||| | |||||||| ||||||||||||||||| ||||||| |||||||||    
T  24431893 agagaaagtgatttggagtgttgaaaattgaaaaagtggatgttgaatgatgttgaatg 24431951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 43618356 - 43618449
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    |||||||  |||||||| |||| |||||||||||||| ||||||||| |||||| ||||||| | ||||||||| || | |||||| ||||||||    
T  43618356 ttgaatggatgttgaattaagagagagaaaatgatgtggagtgttgggaattgataaagtgggtgttgaatggtatt-attgtgttgaaccattg 43618449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 15053696 - 15053635
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtgg 61  Q
    ||||||| ||||||||| |||| |||||||||||||  ||||||||| ||||||||||||||    
T  15053696 ttgaatgggtgttgaattaagagagagaaaatgatgcggagtgttgggaattgaaaaagtgg 15053635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 7990494 - 7990414
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatg 81  Q
    ||||||||||||||||||||| | | ||||| | || |||||||| ||||| ||| ||||| | ||||||| |||||||||    
T  7990494 ttgaatgagtgttgaataagagaaaaaaaataacgtggagtgttgaaaattaaaatagtgggtgttgaatgttgttgaatg 7990414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 31129510 - 31129569
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagt 59  Q
    |||||||||||| |||| |||| |||||||||||||| ||||||||  ||||||||||||    
T  31129510 ttgaatgagtgtcgaattaagagagagaaaatgatgtggagtgttgagaattgaaaaagt 31129569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 92
Target Start/End: Original strand, 7511887 - 7511955
Alignment:
Q  23 agagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccat 92  Q
    |||||||||||||| |||||||||||||| ||||| | ||| ||||  | |||||||||| |||||||||    
T  7511887 agagaaaatgatgtggagtgttggaaattaaaaaaat-gatcttgagggttgttgaatgtttttaaccat 7511955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 44149914 - 44149874
Alignment:
Q  20 gaaagagaaaatgatgtagagtgttggaaattgaaaaagtg 60  Q
    ||||||||||||||||| || ||||||||||| ||||||||    
T  44149914 gaaagagaaaatgatgtggaatgttggaaattaaaaaagtg 44149874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 44503231 - 44503171
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtg 60  Q
    ||||||| ||||| ||| |||| ||||||||||| || ||||||||| |||||||||||||    
T  44503231 ttgaatgggtgttcaattaagagagagaaaatgacgtggagtgttgggaattgaaaaagtg 44503171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 8e-37; HSPs: 38)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 41263425 - 41263319
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattggggatg 100  Q
    |||||||| |||||||||||| |||||||||||||| ||| ||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  41263425 ttgaatgaatgttgaataagagagagaaaatgatgtggagcgttgggaattgaaaaagtggatgttgaatggtgttgaatgtgttgaaccattggggatg 41263326  T
Q  101 gtcttaa 107  Q
    |||||||    
T  41263325 gtcttaa 41263319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 8176311 - 8176414
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattggggatg 100  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||| | ||||||| ||||||||||||| ||||||||||||||    
T  8176311 ttgaatgagtgttgaataagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatgatgttgaatgtgttgaaccattggggatg 8176410  T
Q  101 gtct 104  Q
    ||||    
T  8176411 gtct 8176414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 41153014 - 41153117
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattggggatg 100  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||  |||||||||| ||||| ||||||  ||||||||||||||||  ||||||||||    
T  41153014 ttgaatgagtgttgaataagagagagaaaatgatgtggagtgttgagaattgaaaaaatggatgttgaatattgttgaatgtgtttaagaattggggatg 41153113  T
Q  101 gtct 104  Q
    ||||    
T  41153114 gtct 41153117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 25032416 - 25032311
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattggggatg 100  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||| | ||||| ||| |||||||   | ||| ||||||| ||    
T  25032416 ttgaatgagtgttgaataagagagagaaaatgatgtggagtgttggaaattgaaaaggtgggtgttgaacggtattgaatggtatgaactattgggggtg 25032317  T
Q  101 gtctta 106  Q
    ||||||    
T  25032316 gtctta 25032311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 14278892 - 14278799
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    |||||||| |||||||||||| |||||||||||||| ||||||||| |||||||||| ||| | |||| || |||||||||| ||| |||||||    
T  14278892 ttgaatgaatgttgaataagagagagaaaatgatgtggagtgttgggaattgaaaaaatgggtgttgagtgttgttgaatgtttttcaccattg 14278799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 4577068 - 4577008
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtgg 61  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||    
T  4577068 ttgaatgagtgttgaataagagagagaaaatgatgtggagtgttgggaattgaaaaagtgg 4577008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 8681296 - 8681354
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagt 59  Q
    |||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  8681296 ttgaatgaatgttgaataagaaagagaaaatgatatggagtgttggaaattgaaaaagt 8681354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 34918486 - 34918543
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtg 60  Q
    |||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||    
T  34918486 ttgaatgagtgttgaataagaaaga--aaatgatgtggagtgttggaaattgaaaaagtg 34918543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 25652873 - 25652814
Alignment:
Q  4 aatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggat 63  Q
    |||||||||||||||||| ||||||||||||||  |||||||| ||||||||||||||||    
T  25652873 aatgagtgttgaataagagagagaaaatgatgtgaagtgttgggaattgaaaaagtggat 25652814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 31013851 - 31013922
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatg 71  Q
    ||||||||||||||||| |||| |||||||||||||| ||||||||| |||||||||||||| | |||||||    
T  31013851 ttgaatgagtgttgaattaagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatg 31013922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 15972630 - 15972568
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggat 63  Q
    |||||||| |||||||||||| ||||||||| |||| || |||||||||||||||||||||||    
T  15972630 ttgaatgaatgttgaataagagagagaaaataatgtcgattgttggaaattgaaaaagtggat 15972568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 19241380 - 19241286
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    ||||||| ||||||||| |||| |||||||||||||| ||||||||  |||||||||||||| | ||||| | |||||||||| ||| |||||||    
T  19241380 ttgaatgggtgttgaattaagagagagaaaatgatgtggagtgttgagaattgaaaaagtgggtgttgaaggttgttgaatgtattttaccattg 19241286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 27942555 - 27942461
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    ||||||| ||||||||| |||| |||||||||||||| |||||||||  ||||||||||||| | ||||| | |||||||||| ||| |||||||    
T  27942555 ttgaatgggtgttgaattaagagagagaaaatgatgtggagtgttggggattgaaaaagtgggtgttgaaggttgttgaatgtattttaccattg 27942461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 32976583 - 32976677
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    ||||||| ||||||||| |||| |||||||||||||| ||||||||| |||||||||||||| | ||||| | | |||||||| ||| |||||||    
T  32976583 ttgaatgggtgttgaattaagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaaggttattgaatgtattttaccattg 32976677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 37882439 - 37882542
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattggggatg 100  Q
    ||||||||| ||||||||||  ||| |||||||||| ||||||||| |||||||||| ||| | ||||| | |||||||||| ||| |||||||  ||||    
T  37882439 ttgaatgagcgttgaataag--agaaaaaatgatgtggagtgttgggaattgaaaaaatgggtgttgaacgttgttgaatgtttttcaccattgtagatg 37882536  T
Q  101 gtctta 106  Q
    ||||||    
T  37882537 gtctta 37882542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 40888958 - 40888864
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    ||||||| ||||||||| |||| |||||||||||||| ||||||||| |||||||||||||| | ||||| | | |||||||| ||| |||||||    
T  40888958 ttgaatgggtgttgaattaagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaaggttattgaatgtattttaccattg 40888864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 94
Target Start/End: Complemental strand, 42317944 - 42317858
Alignment:
Q  9 gtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    ||||||||| |||| |||||||||||| | ||||||||||||||||||||||| || ||||| | |||||||| ||||| |||||||    
T  42317944 gtgttgaattaagagagagaaaatgatatggagtgttggaaattgaaaaagtgaatgttgaaggttgttgaatttgttttaccattg 42317858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 27407752 - 27407816
Alignment:
Q  1 ttgaatgagtgttgaataagaaagaga--aaatgatgtagagtgttggaaattgaaaaagtggat 63  Q
    ||||||||||||||||||||| |||||  ||||||||| |||| |||||||||||||||||||||    
T  27407752 ttgaatgagtgttgaataagagagagataaaatgatgtggagtattggaaattgaaaaagtggat 27407816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 9274458 - 9274525
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaa 69  Q
    ||||||||||||| ||||||| ||| |||||||||| ||||||||| |||||||||||||||| |||||    
T  9274458 ttgaatgagtgttaaataagagaga-aaaatgatgtggagtgttgggaattgaaaaagtggatgttgaa 9274525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 10569818 - 10569878
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtgg 61  Q
    ||||||||||||||||||||| | | |||||||||| ||||||||| ||||||||||||||    
T  10569818 ttgaatgagtgttgaataagagacaaaaaatgatgtggagtgttgggaattgaaaaagtgg 10569878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 3454800 - 3454721
Alignment:
Q  1 ttgaatgagtgttgaataa-gaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaa 79  Q
    ||||||||||||||||| | || |||||||||||||| ||||||||  |||||||||||||||| ||||| ||| |||||    
T  3454800 ttgaatgagtgttgaattatgagagagaaaatgatgtggagtgttgagaattgaaaaagtggatgttgaagggtattgaa 3454721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 42608052 - 42608155
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattggggatg 100  Q
    |||||| |||||||||||| | ||||||||||| || |||||||   ||||||||||  |||| ||||||| |||||||||| ||| |||||||  ||||    
T  42608052 ttgaataagtgttgaataaaagagagaaaatgacgtggagtgttaataattgaaaaaacggatgttgaatgttgttgaatgtttttcaccattgtagatg 42608151  T
Q  101 gtct 104  Q
    ||||    
T  42608152 gtct 42608155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 25670913 - 25670974
Alignment:
Q  1 ttgaatgagtgttgaataa-gaaagagaaaatgatgtagagtgttggaaattgaaaaagtgg 61  Q
    ||||||||||||||||| | || |||||||||||||| ||||||||| ||||||||||||||    
T  25670913 ttgaatgagtgttgaattatgagagagaaaatgatgtggagtgttgggaattgaaaaagtgg 25670974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 36572427 - 36572520
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccatt 93  Q
    ||||||| ||||||||| |||| |||||||||||||| |||| |||||||||||||||||| || ||||  | |||||||| || || ||||||    
T  36572427 ttgaatgggtgttgaattaagagagagaaaatgatgtggagtattggaaattgaaaaagtgaatgttgagggttgttgaatttgatttaccatt 36572520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 13479831 - 13479911
Alignment:
Q  1 ttgaatgagtgttgaataa-gaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaat 80  Q
    ||||||||||||||||| | || |||||||||||||| ||||||||| |||| ||||||||| | ||||| ||| ||||||    
T  13479831 ttgaatgagtgttgaattatgagagagaaaatgatgtggagtgttgggaattaaaaaagtgggtgttgaagggtattgaat 13479911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 42807007 - 42807068
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtgg 61  Q
    ||||||| ||||||||| |||| |||||||||||||| ||||||||  ||||||||||||||    
T  42807007 ttgaatgggtgttgaattaagagagagaaaatgatgtggagtgttgagaattgaaaaagtgg 42807068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 11954840 - 11954796
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttg 45  Q
    |||||||| |||||||||||| |||||||||||||| ||||||||    
T  11954840 ttgaatgaatgttgaataagagagagaaaatgatgtggagtgttg 11954796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 94
Target Start/End: Complemental strand, 7651064 - 7650973
Alignment:
Q  4 aatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    |||| ||||||||| |||| |||||||||||||| ||||||||| |||||||||| | | | || || | |||||||||| ||| |||||||    
T  7651064 aatgggtgttgaattaagagagagaaaatgatgtggagtgttgggaattgaaaaaataggtgttaaaggttgttgaatgtattttaccattg 7650973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 23649192 - 23649235
Alignment:
Q  17 taagaaagagaaaatgatgtagagtgttggaaattgaaaaagtg 60  Q
    |||||||||||||||||| | ||||||||| |||||||||||||    
T  23649192 taagaaagagaaaatgatatggagtgttgggaattgaaaaagtg 23649235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 23809379 - 23809336
Alignment:
Q  17 taagaaagagaaaatgatgtagagtgttggaaattgaaaaagtg 60  Q
    |||||||||||||||||| | ||||||||| |||||||||||||    
T  23809379 taagaaagagaaaatgatatggagtgttgggaattgaaaaagtg 23809336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 29619021 - 29619100
Alignment:
Q  1 ttgaatgagtgttgaataa-gaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaa 79  Q
    ||||||| ||||||||| | || | |||||||||||| ||||||||| |||||||||||||| | ||||| ||| |||||    
T  29619021 ttgaatgggtgttgaattatgagaaagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaagggtattgaa 29619100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 177092 - 177042
Alignment:
Q  18 aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttga 68  Q
    ||||||||||||||||||| ||||||| ||||  |||||||||||| ||||    
T  177092 aagaaagagaaaatgatgtggagtgtttgaaaaagaaaaagtggatgttga 177042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 4938249 - 4938143
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattggggat 99  Q
    |||||| |||||||||| |||| |||||||||||||| |||| |||  |||||||||| ||  | ||||||  |||||||||  ||||||||| |  |||    
T  4938249 ttgaattagtgttgaattaagagagagaaaatgatgttgagtattgagaattgaaaaaatgagtgttgaatattgttgaatgattttaaccatcgtagat 4938150  T
Q  100 ggtctta 106  Q
    |||||||    
T  4938149 ggtctta 4938143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 12912933 - 12912875
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagt 59  Q
    ||||||||||||| ||||||| ||| |||||||||| ||||||| | |||| |||||||    
T  12912933 ttgaatgagtgttaaataagagagataaaatgatgtggagtgttaggaattaaaaaagt 12912875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 30648120 - 30648202
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgt 82  Q
    ||||||||||||||||| |||| ||| |||||| ||| |||||| || |||||||||||||| | ||||  | ||||||||||    
T  30648120 ttgaatgagtgttgaattaagagagataaaatggtgtggagtgtagggaattgaaaaagtgggtgttgagggttgttgaatgt 30648202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 27407049 - 27407110
Alignment:
Q  1 ttgaatgagtgtt-gaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtg 60  Q
    ||||||||||||| |||| |||| ||||||||| |||| ||||||||| |||||||||||||    
T  27407049 ttgaatgagtgttagaattaagagagagaaaataatgtggagtgttgggaattgaaaaagtg 27407110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 39008521 - 39008465
Alignment:
Q  23 agagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaa 79  Q
    |||||||| ||| | ||||||||| |||||||||||||||| ||||| ||| |||||    
T  39008521 agagaaaacgatttggagtgttgggaattgaaaaagtggatgttgaagggtattgaa 39008465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 39238455 - 39238419
Alignment:
Q  23 agagaaaatgatgtagagtgttggaaattgaaaaagt 59  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  39238455 agagaaaatgatgtggagtgttgggaattgaaaaagt 39238419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 37245566 - 37245463
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattggggatg 100  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||| | |||||||||||| ||| |||| ||||||||||||||    
T  37245566 ttgaatgagtgttgaataagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatggtgttaaatatgttgaaccattggggatg 37245467  T
Q  101 gtct 104  Q
    ||||    
T  37245466 gtct 37245463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 6363019 - 6362926
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||| ||||  | ||||||||| ||||||||||||    
T  6363019 ttgaatgagtgttgaattaagagagagaaaatgatgtagagtgttgg-aattgaaaaagtggatgttgaccgttgttgaatgggtttaaccattg 6362926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 30822591 - 30822696
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattggggat 99  Q
    ||||||||||||||||| |||| |||||||||||||| ||||||||| |||||||||||||| | ||||||||| || | |||||||||||||||  |||    
T  30822591 ttgaatgagtgttgaatgaagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatggtatt-attgtgtttaaccattgtagat 30822689  T
Q  100 ggtctta 106  Q
    |||||||    
T  30822690 ggtctta 30822696  T

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Target: chr2; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 12855085 - 12854982
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattggggat 99  Q
    ||||||||||||||||| |||| |||||||||||||| ||||||||| |||||||||||||| | ||||||||| || | |||||||||||||||  |||    
T  12855085 ttgaatgagtgttgaatgaagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatggtatt-attgtgtttaaccattgtagat 12854987  T
Q  100 ggtct 104  Q
    |||||    
T  12854986 ggtct 12854982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 927900 - 927978
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaa 79  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||| |||| ||||||||| | |||||| ||||||||    
T  927900 ttgaatgagtgttgaataagagagagaaaatgatgtggagtgttgggaattaaaaaagtgggtgttgaatagtgttgaa 927978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 1987184 - 1987104
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatg 81  Q
    ||||||||||||||||||||| | |||||||||||| ||||||||  ||||||||||||| || |||||| ||||||||||    
T  1987184 ttgaatgagtgttgaataagagatagaaaatgatgtggagtgttgagaattgaaaaagtgaatgttgaatagtgttgaatg 1987104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 1073091 - 1073185
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    ||||||||||||||||| |||| ||||||||||| || |||||||| ||||||||||||||||| ||||  | |||||||| ||||| |||||||    
T  1073091 ttgaatgagtgttgaattaagagagagaaaatgaagtggagtgttgaaaattgaaaaagtggatgttgagggttgttgaatttgttttaccattg 1073185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 14152075 - 14152169
Alignment:
Q  1 ttgaatgagtgttgaataagaa-agagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    ||||||| ||||||||| | || |||||||||||||| ||||||||| |||||||||||||| | ||||||| |||||||||  |||||||||||    
T  14152075 ttgaatgggtgttgaattaaaagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatgttgttgaatggttttaaccattg 14152169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 24997146 - 24997053
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    ||||||||||||||||| |||| |||||||||||||| ||||||||| |||||||||||||| | ||||||||| || | |||||| ||||||||    
T  24997146 ttgaatgagtgttgaattaagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatggtatt-attgtgttgaaccattg 24997053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 9074233 - 9074305
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtg 74  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||| |||| ||||||||| | ||||||||||    
T  9074233 ttgaatgagtgttgaataagagagagaaaatgatgtggagtgttgggaattaaaaaagtgg-tgttgaatggtg 9074305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 31192992 - 31193048
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaa 57  Q
    |||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||    
T  31192992 ttgaatgagtattgaataagagagagaaaatgatgtggagtgttggaaattgaaaaa 31193048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 4 - 94
Target Start/End: Complemental strand, 8852120 - 8852030
Alignment:
Q  4 aatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    |||||||||||||| |||| |||||||||||||| ||||||||| |||||||||||||| | ||||||||| || | |||||| ||||||||    
T  8852120 aatgagtgttgaattaagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatggtatt-attgtgttgaaccattg 8852030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 17485883 - 17485804
Alignment:
Q  1 ttgaatgagtgttgaataa-gaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaa 79  Q
    ||||||||||||||||| | || |||||||||||||| ||||||||| |||||||||||||||| ||||| ||| |||||    
T  17485883 ttgaatgagtgttgaattatgagagagaaaatgatgtggagtgttgggaattgaaaaagtggatgttgaagggtattgaa 17485804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 4296779 - 4296872
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    ||||||||||||||||| |||| ||||||||| |||| ||||||||| |||||||||||||| | ||||||||| || | |||||| ||||||||    
T  4296779 ttgaatgagtgttgaattaagagagagaaaataatgtggagtgttgggaattgaaaaagtgggtgttgaatggtatt-attgtgttgaaccattg 4296872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 22351622 - 22351702
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaat 80  Q
    ||||||| ||||||||| |||| |||||||||||||| ||||||||| |||||||||||||| | ||||| | ||||||||    
T  22351622 ttgaatgggtgttgaattaagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaaggttgttgaat 22351702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 43021807 - 43021727
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaat 80  Q
    ||||||| ||||||||| |||| |||||||||||||| ||||||||| |||||||||||||| | ||||| | ||||||||    
T  43021807 ttgaatgggtgttgaattaagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaaggttgttgaat 43021727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 94
Target Start/End: Original strand, 7588535 - 7588606
Alignment:
Q  23 agagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    |||||||||||||| ||||||||| |||||||||||||| | ||||| | |||||||||| ||| |||||||    
T  7588535 agagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaaggttgttgaatgtattttaccattg 7588606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 36209482 - 36209541
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagt 59  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||  ||||||||||||    
T  36209482 ttgaatgagtgttgaattaagaaagagaaaatgatgtggagtgttgagaattgaaaaagt 36209541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 38901785 - 38901726
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtg 60  Q
    ||||| ||||||||||||||| |||||||||||||| ||||||| | |||||||||||||    
T  38901785 ttgaacgagtgttgaataagagagagaaaatgatgtggagtgtttggaattgaaaaagtg 38901726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 1308728 - 1308774
Alignment:
Q  23 agagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaa 69  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||    
T  1308728 agagaaaatgatgtggagtgttggaaattgaaaaagtggatgttgaa 1308774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 39434020 - 39434090
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatg 71  Q
    ||||||||||||| ||||| | ||| |||||||||| || ||||||||||||||||||||| | |||||||    
T  39434020 ttgaatgagtgtttaataaaagagaaaaaatgatgtggaatgttggaaattgaaaaagtgggtgttgaatg 39434090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 2780753 - 2780806
Alignment:
Q  9 gtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtgga 62  Q
    ||||||||||||| ||||||||||||||||| |||| | |||||||||||||||    
T  2780753 gtgttgaataagagagagaaaatgatgtagaatgttaggaattgaaaaagtgga 2780806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 9117878 - 9117785
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccatt 93  Q
    ||||||||||||||||| |||| |||||||||||  | |||||||| ||||||||||||||| | ||||  | |||||||| ||||| ||||||    
T  9117878 ttgaatgagtgttgaattaagagagagaaaatgaaatggagtgttgaaaattgaaaaagtgggtgttgagagttgttgaatttgttttaccatt 9117785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 31174194 - 31174262
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaat 70  Q
    ||||||||||||||||||||| ||| ||| | |||| ||||||||| |||||||||||||||| ||||||    
T  31174194 ttgaatgagtgttgaataagagagataaa-taatgtggagtgttgggaattgaaaaagtggatattgaat 31174262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 5146722 - 5146798
Alignment:
Q  4 aatgagtgttgaataa-gaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaa 79  Q
    |||||||||||||||| || |||||||||||||| |||||||||||||| ||||| ||| | ||||| ||| |||||    
T  5146722 aatgagtgttgaataaagagagagaaaatgatgtggagtgttggaaattaaaaaaatgggtgttgaagggtattgaa 5146798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 94
Target Start/End: Original strand, 17929286 - 17929357
Alignment:
Q  23 agagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    |||||||||||||| ||||||||| |||||||||| ||||| ||||| ||| |||||  | |||||||||||    
T  17929286 agagaaaatgatgtggagtgttgggaattgaaaaaatggatgttgaagggtattgaaaatttttaaccattg 17929357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 39490209 - 39490130
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaa 79  Q
    ||||||||||||||||| |||| ||||| |||||| | ||||||||| |||||||||||||| | ||||| ||| |||||    
T  39490209 ttgaatgagtgttgaattaagagagagagaatgatttggagtgttgggaattgaaaaagtgggtgttgaagggtattgaa 39490130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 13151492 - 13151582
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaacc 90  Q
    ||||||||||||||||| |||| | | ||||| ||||  |||||||| |||||||||||||| | ||||||| |||||||||  |||||||    
T  13151492 ttgaatgagtgttgaattaagagaaaaaaaattatgtgcagtgttgggaattgaaaaagtgggtgttgaatgttgttgaatggttttaacc 13151582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 94
Target Start/End: Complemental strand, 44280050 - 44279964
Alignment:
Q  9 gtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    ||||||||| |||| |||||||||||||| |||||||| ||||||||||||||| | || || | |||||||| || || |||||||    
T  44280050 gtgttgaattaagagagagaaaatgatgtggagtgttgaaaattgaaaaagtgggtgttaaaggttgttgaatttgatttaccattg 44279964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 6333396 - 6333465
Alignment:
Q  11 gttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaat 80  Q
    ||||||||||| |||||||||||| | || | || | |||||||||||||||| ||||||| ||||||||    
T  6333396 gttgaataagagagagaaaatgatatggaatattaggaattgaaaaagtggatgttgaatgttgttgaat 6333465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 14383025 - 14382965
Alignment:
Q  9 gtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttga 68  Q
    ||||||||| |||| |||||||||||||| ||||||| | |||||||||||||||| ||||    
T  14383025 gtgttgaattaagagagagaaaatgatgtggagtgttaggaattgaaaaagtggatgttga 14382965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 36855782 - 36855838
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaa 57  Q
    ||||||||||||||||||||| ||| ||||| |||  ||||||||| ||||||||||    
T  36855782 ttgaatgagtgttgaataagagagaaaaaataatggggagtgttgggaattgaaaaa 36855838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 7763495 - 7763554
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagt 59  Q
    ||||||| ||||||||| |||| |||||||||||||| ||||||||  ||||||||||||    
T  7763495 ttgaatgggtgttgaattaagagagagaaaatgatgtggagtgttgagaattgaaaaagt 7763554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 36526870 - 36526826
Alignment:
Q  17 taagaaagagaaaatgatgtagagtgttggaaattgaaaaagtgg 61  Q
    ||||| ||||||||| |||| ||||||||| ||||||||||||||    
T  36526870 taagagagagaaaataatgtggagtgttgggaattgaaaaagtgg 36526826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 22737603 - 22737708
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattggggatg 100  Q
    |||||||| |||||||||||| |||||||||||||| ||||||||| |||||||||||||| | ||||||| |||||||| |||| ||||||||||||||    
T  22737603 ttgaatgaatgttgaataagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatgctgttgaatatgttgaaccattggggatg 22737702  T
Q  101 gtctta 106  Q
    ||||||    
T  22737703 gtctta 22737708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 22191284 - 22191179
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattggggatg 100  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||     ||||||| ||||||    
T  22191284 ttgaatgagtgttgaataagagagagaaaatgatgtggagtgttggaaattgaaaaagtgg-tgttgaatggtgttgaatggtaaaaaccattagggatg 22191186  T
Q  101 gtcttaa 107  Q
    |||||||    
T  22191185 gtcttaa 22191179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 21654910 - 21654850
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtgg 61  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  21654910 ttgaatgagtgttgaataagagagagaaaatgatgtggagtgttggaaattgaaaaagtgg 21654850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 24793555 - 24793477
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaa 79  Q
    |||||||||||||||||||||||||||||||||| | ||||||||| | ||||||||| || | |||||||||||||||    
T  24793555 ttgaatgagtgttgaataagaaagagaaaatgatttggagtgttgggacttgaaaaagggggtgttgaatggtgttgaa 24793477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 37888575 - 37888513
Alignment:
Q  42 gttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattggggatggtct 104  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  37888575 gttgggaattgaaaaagtggatgttgaatggtgttgaatgtgtttaaccattgaggatggtct 37888513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 48984971 - 48984911
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtgg 61  Q
    ||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||    
T  48984971 ttgaatgagtgttgaataagagagagaaaatgatgtggagcgttggaaattgaaaaagtgg 48984911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 36518580 - 36518486
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    ||||||||||||||||| |||| |||||||||||||| ||||||||| |||||||||||||| | ||||| | | |||||||| ||| |||||||    
T  36518580 ttgaatgagtgttgaattaagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaaggttattgaatgtattttaccattg 36518486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 38970097 - 38970017
Alignment:
Q  1 ttgaatgagtgttgaataaga--aagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaa 79  Q
    |||||||||||||||||||||  || | |||||||||| |||||||||||||||||||||||| | ||||| |||||||||    
T  38970097 ttgaatgagtgttgaataagaggaaaaaaaaatgatgtggagtgttggaaattgaaaaagtgggtgttgaaaggtgttgaa 38970017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 25218819 - 25218891
Alignment:
Q  4 aatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgtt 76  Q
    ||||||| |||||||||| |||||||||||| |  ||||||||||||||||||||||||| || |||||||||    
T  25218819 aatgagtattgaataagagagagaaaatgatatgaagtgttggaaattgaaaaagtggatgttaaatggtgtt 25218891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 33078792 - 33078886
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    |||||||| |||||||| |||| ||||||||| | || ||||||||| |||||||||||||||| ||||  | |||||||| |||||||||||||    
T  33078792 ttgaatgaatgttgaattaagagagagaaaataacgtggagtgttgggaattgaaaaagtggatgttgagggttgttgaatatgtttaaccattg 33078886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 47159502 - 47159595
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    ||||||| ||||||||| |||| |||||||||||||| ||||||||| |||| ||||||||||| ||||| | |||||||||| ||| |||||||    
T  47159502 ttgaatgggtgttgaattaagagagagaaaatgatgtggagtgttgggaatt-aaaaagtggatgttgaaggttgttgaatgtattttaccattg 47159595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 39769794 - 39769733
Alignment:
Q  1 ttgaatgagtgttgaataa-gaaagagaaaatgatgtagagtgttggaaattgaaaaagtgg 61  Q
    ||||||||||||||||| | || |||||||||||||| ||||||||||||||||||||||||    
T  39769794 ttgaatgagtgttgaattatgagagagaaaatgatgtggagtgttggaaattgaaaaagtgg 39769733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 43571102 - 43571162
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtgg 61  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||| ||  ||||||||||    
T  43571102 ttgaatgagtgttgaataagagagagaaaatgatgtggagtgttgggaagagaaaaagtgg 43571162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 30720185 - 30720126
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagt 59  Q
    ||||||| ||||||||| |||| |||||||||||||| ||||||||||||||||||||||    
T  30720185 ttgaatgggtgttgaattaagagagagaaaatgatgtggagtgttggaaattgaaaaagt 30720126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 5813163 - 5813070
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    |||||| |||||||||| |||| ||||||||||||||  |||||||| |||||||||||||| | ||||||||| || | |||||| ||||||||    
T  5813163 ttgaataagtgttgaattaagagagagaaaatgatgtgcagtgttgggaattgaaaaagtgggtgttgaatggtatt-attgtgttgaaccattg 5813070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 30566665 - 30566571
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    ||||||||||||||||| |||| |||||||||||||| ||||||||  |||||||||||||| | ||||    |||||||| ||||| |||||||    
T  30566665 ttgaatgagtgttgaattaagagagagaaaatgatgtggagtgttgagaattgaaaaagtgggtgttgaggattgttgaatttgttttaccattg 30566571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 35029116 - 35029209
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    ||||||||||||||||| |||| |||||||||||||| || |||||| |||||||||||| | | ||||||||| || | |||||| ||||||||    
T  35029116 ttgaatgagtgttgaattaagagagagaaaatgatgtggaatgttgggaattgaaaaagtaggtgttgaatggtatt-attgtgttgaaccattg 35029209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 114551 - 114494
Alignment:
Q  4 aatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtgg 61  Q
    |||||||||||||||||| |||||||||||||| ||||||||  |||| |||||||||    
T  114551 aatgagtgttgaataagagagagaaaatgatgtggagtgttgagaatttaaaaagtgg 114494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 33508533 - 33508590
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaa 57  Q
    ||||||||||||||||| |||| ||||||||||| |||||||||||| ||||||||||    
T  33508533 ttgaatgagtgttgaattaagagagagaaaatgacgtagagtgttgggaattgaaaaa 33508590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 40302498 - 40302555
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaa 57  Q
    ||||||||||||||||| |||| |||||||||||||| ||||||||| ||||||||||    
T  40302498 ttgaatgagtgttgaattaagagagagaaaatgatgtggagtgttgggaattgaaaaa 40302555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 42881415 - 42881355
Alignment:
Q  9 gtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttga 68  Q
    ||||||||| |||| |||||||||||||| ||||||||| |||||||||||||||| ||||    
T  42881415 gtgttgaattaagagagagaaaatgatgtggagtgttgggaattgaaaaagtggatgttga 42881355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 35193127 - 35193186
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtg 60  Q
    ||||||||||||||||||| | | ||||||| |||| ||||||||| |||||||||||||    
T  35193127 ttgaatgagtgttgaataatagaaagaaaattatgtggagtgttgggaattgaaaaagtg 35193186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 93
Target Start/End: Original strand, 28318058 - 28318143
Alignment:
Q  9 gtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccatt 93  Q
    ||||||||| |||| |||||||||||||| ||||||||| |||| ||||||||||| || || | |||||||| || || ||||||    
T  28318058 gtgttgaattaagagagagaaaatgatgtggagtgttgggaattaaaaaagtggatgttaaaggttgttgaatttggtttaccatt 28318143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 38351641 - 38351584
Alignment:
Q  4 aatgagtgttgaataa-gaaagagaaaatgatgtagagtgttggaaattgaaaaagtg 60  Q
    ||||| |||||||| | ||||||||||||||||| |||||||||||||| ||||||||    
T  38351641 aatgaatgttgaattatgaaagagaaaatgatgtggagtgttggaaattaaaaaagtg 38351584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 25038601 - 25038661
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtgg 61  Q
    |||||||||||| |||||||| ||||||||||||||  |||| ||| |||| |||||||||    
T  25038601 ttgaatgagtgtcgaataagagagagaaaatgatgtgaagtgctgggaattaaaaaagtgg 25038661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 45549626 - 45549705
Alignment:
Q  1 ttgaatgagtgttgaataa-gaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaa 79  Q
    ||||||| ||||||||| | || ||| |||||||||| ||||||||| |||||||||||||| | ||||| ||| |||||    
T  45549626 ttgaatgggtgttgaattatgagagaaaaaatgatgtggagtgttgggaattgaaaaagtggttgttgaagggtattgaa 45549705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 43202150 - 43202228
Alignment:
Q  4 aatgagtgttgaataagaaagagaaaatgatgtagagtg-ttggaaattgaaaaagtggattttgaatggtgttgaatg 81  Q
    |||||||||||| ||||| ||||||||| ||||  |||| ||||  ||||||||||||||| ||||||  |||||||||    
T  43202150 aatgagtgttgagtaagagagagaaaataatgtgaagtgattgggcattgaaaaagtggatgttgaattttgttgaatg 43202228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 37951814 - 37951718
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagag--aaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    ||||||| ||||||||| |||| ||||  |||||||| | ||||||||| |||||||||||| | | ||||| | |||||||||| ||| |||||||    
T  37951814 ttgaatgggtgttgaattaagagagagggaaaatgatatggagtgttgggaattgaaaaagtaggtgttgaaggttgttgaatgtattttaccattg 37951718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 26013207 - 26013258
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattga 53  Q
    |||||||||| ||||| |||| |||||||||||| | ||||||||||||||||    
T  26013207 ttgaatgagtattgaa-aagagagagaaaatgatatggagtgttggaaattga 26013258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 32130301 - 32130357
Alignment:
Q  23 agagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaa 79  Q
    |||||||||||||| ||||||||| |||| ||||||||| | ||| ||||| |||||    
T  32130301 agagaaaatgatgtggagtgttgggaattaaaaaagtgggtgttgcatggtattgaa 32130357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 62)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 50017118 - 50017045
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtg 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  50017118 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttgggaattgaaaaagtggattttgaatggtg 50017045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 46572933 - 46573038
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattggggatg 100  Q
    |||||||||| |||||||||| |||||||||||||| ||||||||| |||||||||||||| | ||||||| |||||||||| ||| |||||||  ||||    
T  46572933 ttgaatgagtcttgaataagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatgttgttgaatgtttttcaccattgtagatg 46573032  T
Q  101 gtctta 106  Q
    ||||||    
T  46573033 gtctta 46573038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 42601826 - 42601748
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaa 79  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||| | |||||||||||||||    
T  42601826 ttgaatgagtgttgaataagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatggtgttgaa 42601748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 41890599 - 41890520
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatg 81  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||| ||| |||||||||||||||||    
T  41890599 ttgaatgagtgttgaataagagagagaaaatgatgtggagtgttgggaattgaaaaagt-gatgttgaatggtgttgaatg 41890520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 50033732 - 50033657
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgtt 76  Q
    ||||||||||||||||||||| ||| ||||||||||||| ||||||||||| ||||||||||| ||||||||||||    
T  50033732 ttgaatgagtgttgaataagagagaaaaaatgatgtagaatgttggaaattaaaaaagtggatgttgaatggtgtt 50033657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 25790782 - 25790887
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattggggat 99  Q
    ||||||||||||||||| |||| |||||||||||||| ||||||||| |||||||||||||| | ||||||||| || | |||||||||||||||  |||    
T  25790782 ttgaatgagtgttgaatgaagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatggtatt-attgtgtttaaccattgtagat 25790880  T
Q  100 ggtctta 106  Q
    |||||||    
T  25790881 ggtctta 25790887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 25832732 - 25832811
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatg 81  Q
    ||||||||||||||||||||| ||||||||||||||  |||||||| |||||||||||||| | |||||||||||||||||    
T  25832732 ttgaatgagtgttgaataagagagagaaaatgatgtgaagtgttgggaattgaaaaagtgg-tgttgaatggtgttgaatg 25832811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 49823178 - 49823250
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggt 73  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||  ||||||||||    
T  49823178 ttgaatgagtgttgaataagagagagaaaatgatgtggagtgttgggaattgaaaaagtggtgtttgaatggt 49823250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 50415837 - 50415931
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    ||||||| ||||||||| |||| |||||||||||||| |||||||||||||||||||||||| | ||||| | |||||||||| ||| |||||||    
T  50415837 ttgaatgggtgttgaattaagagagagaaaatgatgtggagtgttggaaattgaaaaagtgggtgttgaaggttgttgaatgtattttaccattg 50415931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 42601513 - 42601585
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtg 74  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||| | ||||||||||    
T  42601513 ttgaatgagtgttgaataagagagagaaaatgatgtggagtgttgggaattgaaaaagtgg-tgttgaatggtg 42601585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 7 - 94
Target Start/End: Complemental strand, 7008115 - 7008027
Alignment:
Q  7 gagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| | ||||  | |||||||| ||||| |||||||    
T  7008115 gagtgttgaattaagagagagaaaatgatgtagagtgttggaaattgaaaaagtgggtgttgagggttgttgaatttgttttaccattg 7008027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 49147296 - 49147364
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaa 69  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||| ||| |||||    
T  49147296 ttgaatgagtgttgaataagagagagaaaatgatgtggagtgttgggaattgaaaaagtagatgttgaa 49147364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 51427165 - 51427105
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtgg 61  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||    
T  51427165 ttgaatgagtgttgaataagagagagaaaatgatgtggagtgttgggaattgaaaaagtgg 51427105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 139041 - 138947
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    ||||||||||||||||| |||| ||| |||||||||| ||||||||| ||||||||||| |||| |||| || |||||||||  |||||||||||    
T  139041 ttgaatgagtgttgaattaagagagacaaaatgatgtggagtgttgggaattgaaaaagcggatgttgagtgttgttgaatggttttaaccattg 138947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 29701748 - 29701654
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    ||||||| ||||||||| |||| |||||||||||||| ||||||||| |||||||||||||| | ||||| | |||||||||| ||| |||||||    
T  29701748 ttgaatgggtgttgaattaagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaaggttgttgaatgtattttaccattg 29701654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 20139426 - 20139322
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattggggat 99  Q
    ||||||||||||||||| |||| ||||||||||||||  |||||||  |||||||||||||| | |||| || |||||||||  |||||||||||  |||    
T  20139426 ttgaatgagtgttgaattaagagagagaaaatgatgtgaagtgttgagaattgaaaaagtgggtattgagtgttgttgaatggttttaaccattgtagat 20139327  T
Q  100 ggtct 104  Q
    |||||    
T  20139326 ggtct 20139322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 33935056 - 33934996
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtgg 61  Q
    |||| |||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||    
T  33935056 ttgattgagtgttgaataagagagagaaaatgatgtggagtgttgggaattgaaaaagtgg 33934996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 35424019 - 35424087
Alignment:
Q  3 gaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatg 71  Q
    ||||||||||||||||||| ||| |||||||||| ||||||||| |||||||||| ||||| |||||||    
T  35424019 gaatgagtgttgaataagagagaaaaaatgatgtggagtgttgggaattgaaaaaatggatgttgaatg 35424087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 94
Target Start/End: Complemental strand, 4046038 - 4045952
Alignment:
Q  9 gtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    ||||||||| |||| |||||||||||||| ||||||||| |||||||||||||||| ||||| | |||||||| || || |||||||    
T  4046038 gtgttgaattaagagagagaaaatgatgtggagtgttgggaattgaaaaagtggatgttgaaggttgttgaatttgatttaccattg 4045952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 5845147 - 5845240
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    ||||||||||||||||| |||| ||| |||||||||| ||||||||| |||||||||||||| | ||||||||| || | |||||| ||||||||    
T  5845147 ttgaatgagtgttgaattaagagagataaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatggtatt-attgtgttgaaccattg 5845240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 17466581 - 17466488
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    ||||||| ||||||||| |||| |||||||||||||| ||||||||| |||||||||||||| | ||||||||| || | |||||| ||||||||    
T  17466581 ttgaatgggtgttgaattaagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatggtatt-attgtgttgaaccattg 17466488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 28155235 - 28155341
Alignment:
Q  1 ttgaatgagtgttgaataa-gaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattggggat 99  Q
    ||||||||||||||||| | || ||||||||| |||||||||||| |||||||||||||||| | ||||| ||| |||||  | ||| ||||||| | ||    
T  28155235 ttgaatgagtgttgaattatgagagagaaaattatgtagagtgttagaaattgaaaaagtgggtgttgaagggtattgaaatttttttaccattgagaat 28155334  T
Q  100 ggtctta 106  Q
    |||||||    
T  28155335 ggtctta 28155341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 30418436 - 30418530
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    ||||||| ||||||||| |||| |||||||||||||| ||||||||| |||||||||||||| | ||||| | | |||||||| ||| |||||||    
T  30418436 ttgaatgggtgttgaattaagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaaggttattgaatgtattttaccattg 30418530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 94
Target Start/End: Original strand, 32120453 - 32120539
Alignment:
Q  9 gtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    ||||||||| |||| |||||||||||||| ||||||||| |||||||||||||| | ||||| | |||||||| ||||| |||||||    
T  32120453 gtgttgaattaagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaaggttgttgaatttgttttaccattg 32120539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 43473956 - 43473862
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    ||||||| ||||||||| |||| |||||||||||| | || |||||| |||||||||||||||| ||||  | |||||||| |||||||||||||    
T  43473956 ttgaatgggtgttgaattaagagagagaaaatgatctggaatgttgggaattgaaaaagtggatgttgagggttgttgaatatgtttaaccattg 43473862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 94
Target Start/End: Complemental strand, 44084367 - 44084281
Alignment:
Q  9 gtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    ||||||||| |||| |||||||||||||| ||||||||| |||||||||||||| | ||||| | |||||||| ||||| |||||||    
T  44084367 gtgttgaattaagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaaggttgttgaatttgttttaccattg 44084281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 47144239 - 47144146
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    |||||| |||||||||| |||| |||||||||||||| ||||||||| |||||||||||||| | ||||||||| || | |||||| ||||||||    
T  47144239 ttgaataagtgttgaattaagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatggtatt-attgtgttgaaccattg 47144146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 7521145 - 7521202
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaag 58  Q
    ||||||||||||||||||||| |||||||||||| |  ||||||||||||||||||||    
T  7521145 ttgaatgagtgttgaataagagagagaaaatgatctgaagtgttggaaattgaaaaag 7521202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 2 - 94
Target Start/End: Complemental strand, 12974733 - 12974640
Alignment:
Q  2 tgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    |||||| ||||||||| |||| |||||||||||||| ||||||||| |||||||||||||| | ||||| ||| |||||  | |||||||||||    
T  12974733 tgaatgggtgttgaattaagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaagggtattgaaaatttttaaccattg 12974640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 25450642 - 25450740
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattggggatg 100  Q
    |||||||| |||||||||||| |||||||||||||| ||| ||||| |||||||||| ||          ||||||||||||||| ||||||||||||||    
T  25450642 ttgaatgaatgttgaataagagagagaaaatgatgtggagcgttgggaattgaaaaaatg----------ggtgttgaatgtgttgaaccattggggatg 25450731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 27847472 - 27847407
Alignment:
Q  4 aatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttga 68  Q
    |||| ||||||||| |||| |||||||||||||| |||||||||||||||||||||||||| ||||    
T  27847472 aatgggtgttgaattaagagagagaaaatgatgtggagtgttggaaattgaaaaagtggatgttga 27847407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 33795503 - 33795575
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgtt 76  Q
    |||||||||||||||||||||||||||||||||    || |||||| |||| ||||||||||| ||||||||||||    
T  33795503 ttgaatgagtgttgaataagaaagagaaaatga---ggattgttgggaattaaaaaagtggatgttgaatggtgtt 33795575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 6048703 - 6048783
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaat 80  Q
    ||||||| ||||||||| |||| |||||||||||||| ||||||||| |||||||||||||| | ||||| | ||||||||    
T  6048703 ttgaatgggtgttgaattaagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaaggttgttgaat 6048783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 33748750 - 33748694
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaa 57  Q
    ||||||||||||||| ||| | |||||||||||||| ||||||||||||||||||||    
T  33748750 ttgaatgagtgttgagtaaaagagagaaaatgatgtggagtgttggaaattgaaaaa 33748694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 35853200 - 35853260
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtgg 61  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||| ||  ||||||||||    
T  35853200 ttgaatgagtgttgaataagagagagaaaatgatgtggagtgttgggaagagaaaaagtgg 35853260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 43022713 - 43022653
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtgg 61  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||| ||  ||||||||||    
T  43022713 ttgaatgagtgttgaataagagagagaaaatgatgtggagtgttgggaagagaaaaagtgg 43022653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 49710397 - 49710457
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtgg 61  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||| ||  ||||||||||    
T  49710397 ttgaatgagtgttgaataagagagagaaaatgatgtggagtgttgggaagagaaaaagtgg 49710457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 51999244 - 51999324
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaat 80  Q
    ||||||| ||||||||| |||| |||||||||||||| ||||||||| |||||||||||||| | ||||| | ||||||||    
T  51999244 ttgaatgggtgttgaattaagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaaggttgttgaat 51999324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 26165561 - 26165640
Alignment:
Q  1 ttgaatgagtgttgaataa-gaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaa 79  Q
    ||||||| ||||||||| | || |||||||||||||| ||||||||| |||||||||||||||| ||||| ||| |||||    
T  26165561 ttgaatgggtgttgaattatgagagagaaaatgatgtggagtgttgggaattgaaaaagtggatgttgaagggtattgaa 26165640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 46123992 - 46123933
Alignment:
Q  1 ttgaatgagtgttgaataa-gaaagagaaaatgatgtagagtgttggaaattgaaaaagt 59  Q
    ||||||||||||||||| | || ||||||||||||||||| |||||||||||||||||||    
T  46123992 ttgaatgagtgttgaattatgagagagaaaatgatgtagaatgttggaaattgaaaaagt 46123933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 37410427 - 37410522
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattggggatg 100  Q
    |||||||| |||||||||||| |||||||||||||| |||| |||| |||||||||||          |||||||||||| |||| ||||||| ||||||    
T  37410427 ttgaatgaatgttgaataagagagagaaaatgatgtggagtattgggaattgaaaaag----------atggtgttgaatatgttgaaccattagggatg 37410516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 6832450 - 6832382
Alignment:
Q  1 ttgaatgagtgttgaataagaa-agagaaaatgatgtagagtgttggaaattgaaaaagtggattttga 68  Q
    ||||||||||||||||| | || | |||||||||||| ||||||||| |||||||||||||||| ||||    
T  6832450 ttgaatgagtgttgaattaaaagaaagaaaatgatgtggagtgttgggaattgaaaaagtggatgttga 6832382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 11908085 - 11908006
Alignment:
Q  1 ttgaatgagtgttgaataa-gaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaa 79  Q
    ||||||| ||||||||| | || ||| |||||||||| |||||||||||||||||||||||| | ||||| ||| |||||    
T  11908085 ttgaatgggtgttgaattatgagagaaaaaatgatgtggagtgttggaaattgaaaaagtgggtgttgaagggtattgaa 11908006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 30692435 - 30692497
Alignment:
Q  16 ataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaa 79  Q
    |||||| |||||||||||||| ||||||| |||||||||||| || || |||||||||||||||    
T  30692435 ataagagagagaaaatgatgttgagtgtt-gaaattgaaaaaatgaatattgaatggtgttgaa 30692497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 47701073 - 47701164
Alignment:
Q  4 aatgagtgttgaataagaaagagaaaa-tgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    |||||||||||||||||| ||| |||| |||||| ||||||||  |||||||||||||| | |||| || |||||| ||  |||||||||||    
T  47701073 aatgagtgttgaataagagagaaaaaaatgatgtggagtgttgagaattgaaaaagtgggtgttgagtgttgttgattggttttaaccattg 47701164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 50734065 - 50734014
Alignment:
Q  17 taagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttga 68  Q
    ||||| |||||||||||||| |||| ||||||||||||||||||||| ||||    
T  50734065 taagagagagaaaatgatgtggagttttggaaattgaaaaagtggatgttga 50734014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 50778790 - 50778841
Alignment:
Q  17 taagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttga 68  Q
    ||||| |||||||||||||| |||| ||||||||||||||||||||| ||||    
T  50778790 taagagagagaaaatgatgtggagttttggaaattgaaaaagtggatgttga 50778841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 35472656 - 35472713
Alignment:
Q  23 agagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaat 80  Q
    ||||||||| |||| ||||||||| |||||||||||||||| ||||| ||| ||||||    
T  35472656 agagaaaataatgtggagtgttgggaattgaaaaagtggatgttgaagggtattgaat 35472713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 41183332 - 41183279
Alignment:
Q  9 gtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtgg 61  Q
    ||||||||| |||| |||||||||||||| ||||||||| ||||||||||||||    
T  41183332 gtgttgaattaagagagagaaaatgatgtggagtgttgggaattgaaaaagtgg 41183279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 28410459 - 28410399
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtgg 61  Q
    ||||||||||||||||||| | ||||||||||| || ||||||||| ||  ||||||||||    
T  28410459 ttgaatgagtgttgaataaaagagagaaaatgacgtggagtgttgggaagagaaaaagtgg 28410399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 37183844 - 37183904
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtg 60  Q
    ||||||| ||||||||| |||| |||||||||||||| ||||||| | |||||||||||||    
T  37183844 ttgaatgggtgttgaattaagagagagaaaatgatgtggagtgttaggaattgaaaaagtg 37183904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 42560959 - 42560887
Alignment:
Q  9 gtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaat 80  Q
    ||||||||| |||| |||||||||||||| || |||||| |||||||||||||| | ||||| | ||||||||    
T  42560959 gtgttgaattaagagagagaaaatgatgtggaatgttgggaattgaaaaagtgggtgttgaaggttgttgaat 42560887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 49407345 - 49407413
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaa 69  Q
    |||||||||| |||||||| | ||||||||| | ||  |||||| |||||||||||||||||| |||||    
T  49407345 ttgaatgagtattgaataaaagagagaaaataaggtgaagtgttcgaaattgaaaaagtggatgttgaa 49407413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 15493830 - 15493885
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaag 58  Q
    |||||||| ||||||||||||  |||||| |||||| ||||||||| |||||||||||    
T  15493830 ttgaatgaatgttgaataaga--gagaaagtgatgtggagtgttgggaattgaaaaag 15493885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 50176103 - 50176149
Alignment:
Q  11 gttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaa 57  Q
    ||||||||||| ||| |||||||||| ||||||||| ||||||||||    
T  50176103 gttgaataagagagataaaatgatgtggagtgttgggaattgaaaaa 50176149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #56
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 55026805 - 55026711
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    ||||||||||||||||| |||| ||||||||||| ||  ||||||| ||||||||||| ||| | ||||  | |||||||| | ||| |||||||    
T  55026805 ttgaatgagtgttgaattaagagagagaaaatgaagtgaagtgttgaaaattgaaaaaatgggtgttgagggttgttgaatttattttaccattg 55026711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #57
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 10426461 - 10426518
Alignment:
Q  23 agagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaat 80  Q
    |||||||||||||| ||||||||| |||||||||| ||| | ||||| | ||||||||    
T  10426461 agagaaaatgatgtggagtgttgggaattgaaaaaatgggtgttgaaggttgttgaat 10426518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #58
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 94
Target Start/End: Original strand, 31170261 - 31170326
Alignment:
Q  29 aatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    |||||||||||||||||| |||||||||| ||| | ||||| ||| |||||  | |||||||||||    
T  31170261 aatgatgtagagtgttgggaattgaaaaaatgggtgttgaagggtattgaaattttttaaccattg 31170326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #59
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 36178734 - 36178791
Alignment:
Q  23 agagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaat 80  Q
    |||||||||||| |  |||||||| |||||||||||||| | ||||| ||||||||||    
T  36178734 agagaaaatgatttgaagtgttgggaattgaaaaagtgggtgttgaagggtgttgaat 36178791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #60
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 49357505 - 49357538
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgat 34  Q
    ||||||||||||||||||||| ||||||||||||    
T  49357505 ttgaatgagtgttgaataagagagagaaaatgat 49357538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #61
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 744265 - 744225
Alignment:
Q  17 taagaaagagaaaatgatgtagagtgttggaaattgaaaaa 57  Q
    ||||| |||||||||||||| ||||||||| ||||||||||    
T  744265 taagagagagaaaatgatgtggagtgttggtaattgaaaaa 744225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #62
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 57
Target Start/End: Complemental strand, 53722148 - 53722116
Alignment:
Q  25 agaaaatgatgtagagtgttggaaattgaaaaa 57  Q
    |||||||||||| ||||||||||||||||||||    
T  53722148 agaaaatgatgtggagtgttggaaattgaaaaa 53722116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 30546 - 30648
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattggggatg 100  Q
    |||||| |||||||||||||| ||||||||| || | ||||||||  |||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  30546 ttgaataagtgttgaataagagagagaaaattatatggagtgttgagaattgaaaaagtggatgttgaatggtgttgaatgggtttaaccattggggatg 30645  T
Q  101 gtc 103  Q
    |||    
T  30646 gtc 30648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 39)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 44651134 - 44651030
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattggggatg 100  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||| | ||||||||||||||| |     ||||||||||||||    
T  44651134 ttgaatgagtgttgaataagagagagaaaatgatgtggagtgttgggaattgaaaaagtgg-tgttgaatggtgttgaaagaaaaaaaccattggggatg 44651036  T
Q  101 gtctta 106  Q
    ||||||    
T  44651035 gtctta 44651030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 3755036 - 3755128
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccatt 93  Q
    |||| ||| |||||||||||| |||||||||||||||||||||||  ||||||||||||||||  ||||||||||||||||| ||| ||||||    
T  3755036 ttgattgaatgttgaataagagagagaaaatgatgtagagtgttgagaattgaaaaagtggatgctgaatggtgttgaatgttttttaccatt 3755128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 44334350 - 44334270
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatg 81  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||  |||||||||||||||| ||||||||| |||||||    
T  44334350 ttgaatgagtgttgaataagagagagaaaatgatgtggagtgttgagaattgaaaaagtggatgttgaatggtattgaatg 44334270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 8464160 - 8464085
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgtt 76  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||  |||||||||||||||| ||||||||||||    
T  8464160 ttgaatgagtgttgaataagagagagaaaatgatgtggagtgttgagaattgaaaaagtggatgttgaatggtgtt 8464085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 45239200 - 45239095
Alignment:
Q  1 ttgaatgagtgttgaataa-gaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattggggat 99  Q
    ||||||||||||||||||| || |||||||||||||| ||||||||| |||||||||||||| | ||||||||| || | |||||||||||||||  |||    
T  45239200 ttgaatgagtgttgaataaagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatggtatt-attgtgtttaaccattgtagat 45239102  T
Q  100 ggtctta 106  Q
    |||||||    
T  45239101 ggtctta 45239095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 17783438 - 17783364
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgt 75  Q
    ||||||||||||||||||||| |||||||||||||| || |||||| |||| ||||||||||| |||||||||||    
T  17783438 ttgaatgagtgttgaataagagagagaaaatgatgtggaatgttgggaattaaaaaagtggatgttgaatggtgt 17783364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 44451278 - 44451338
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtgg 61  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||    
T  44451278 ttgaatgagtgttgaataagagagagaaaatgatgtggagtgttgggaattgaaaaagtgg 44451338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 643830 - 643890
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtgg 61  Q
    ||||||||||||||||||||| ||||||||||| || ||||||||| ||||||||||||||    
T  643830 ttgaatgagtgttgaataagagagagaaaatgacgtggagtgttgggaattgaaaaagtgg 643890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 41542381 - 41542313
Alignment:
Q  11 gttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaa 79  Q
    ||||||||||| |||||| ||||||| ||||||||| |||||||||||||||| ||||||| |||||||    
T  41542381 gttgaataagagagagaatatgatgtggagtgttgggaattgaaaaagtggatgttgaatgatgttgaa 41542313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 94
Target Start/End: Original strand, 2478343 - 2478429
Alignment:
Q  9 gtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    ||||||||| |||| |||||||||||||| ||||||||| |||||||||||||| | ||||| | |||||||| ||||| |||||||    
T  2478343 gtgttgaattaagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaaggttgttgaatttgttttaccattg 2478429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 93
Target Start/End: Complemental strand, 8468383 - 8468293
Alignment:
Q  4 aatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccatt 93  Q
    |||| ||||||||| |||| |||||||||||||| ||||||||| |||||||||||||| | ||||  | |||||||||| ||||||||||    
T  8468383 aatgtgtgttgaattaagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgagggttgttgaatgtttttaaccatt 8468293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 27630467 - 27630560
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    ||||||||||||||||| |||| ||| |||||||||| ||||||||| |||||||||||||| | ||||||||| || | |||||| ||||||||    
T  27630467 ttgaatgagtgttgaattaagagagataaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatggtatt-attgtgttgaaccattg 27630560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 31468195 - 31468102
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    |||||||| |||||||| |||| |||||||||||||| ||||||||| |||||||||||||| | ||||||||| || | |||||| ||||||||    
T  31468195 ttgaatgaatgttgaattaagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatggtatt-attgtgttgaaccattg 31468102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 37420351 - 37420444
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    ||||||||||||||||| |||| ||| |||||||||| ||||||||| |||||||||||||| | ||||||||| || | |||||| ||||||||    
T  37420351 ttgaatgagtgttgaattaagagagataaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatggtatt-attgtgttgaaccattg 37420444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 19578917 - 19578985
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttga 68  Q
    ||||||| ||||||||| |||| |||||||||||||| ||||||||| |||||||||||||||| ||||    
T  19578917 ttgaatgggtgttgaattaagagagagaaaatgatgtggagtgttgggaattgaaaaagtggatgttga 19578985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 36303035 - 36302975
Alignment:
Q  9 gtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaa 69  Q
    ||||||||||||||||||||||| |||| |||||||| ||||||||||| ||||| |||||    
T  36303035 gtgttgaataagaaagagaaaataatgtggagtgttgaaaattgaaaaaatggatgttgaa 36302975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 48388115 - 48388195
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaat 80  Q
    ||||||| ||||||||| |||| |||||||||||||| ||||||||| |||||||||||||| | ||||| | ||||||||    
T  48388115 ttgaatgggtgttgaattaagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaaggttgttgaat 48388195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 48729383 - 48729315
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaa 69  Q
    ||||||| ||||||||||||||||||||||||||||  ||||||  ||||||||||| ||||| |||||    
T  48729383 ttgaatgtgtgttgaataagaaagagaaaatgatgtgaagtgttaaaaattgaaaaaatggatgttgaa 48729315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 29523765 - 29523686
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaa 79  Q
    |||||||  |||||||| |||| |||||||||||||| ||||||||| |||||||||||||| | ||||| |||||||||    
T  29523765 ttgaatggatgttgaattaagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaagggtgttgaa 29523686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 48404392 - 48404333
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagt 59  Q
    ||||||||||||||||| |||| |||||||||||||| ||||||||| ||||||||||||    
T  48404392 ttgaatgagtgttgaattaagagagagaaaatgatgtggagtgttgggaattgaaaaagt 48404333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 36230419 - 36230325
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    ||||||| ||||||||| |||| ||| ||||||||||  |||||||| |||||||||||| | | ||||  | ||||||||||||||||||||||    
T  36230419 ttgaatgggtgttgaattaagagagataaaatgatgtgaagtgttgggaattgaaaaagttggtgttgagggttgttgaatgtgtttaaccattg 36230325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 30878551 - 30878612
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtgg 61  Q
    |||||||  |||||||| |||| |||||||||||||| ||||||||||||||||||||||||    
T  30878551 ttgaatggatgttgaattaagagagagaaaatgatgtggagtgttggaaattgaaaaagtgg 30878612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 35847128 - 35847197
Alignment:
Q  1 ttgaatgagtgttgaataa-gaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaa 69  Q
    ||||||| ||||||||| | || |||||||||||||| |||||||||||||| ||||||||||| |||||    
T  35847128 ttgaatgggtgttgaattatgagagagaaaatgatgtggagtgttggaaattaaaaaagtggatgttgaa 35847197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 45456158 - 45456219
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtgg 61  Q
    ||||||||||||||||| |||| ||||||||| |||| ||||||||| ||||||||||||||    
T  45456158 ttgaatgagtgttgaattaagagagagaaaattatgtggagtgttgggaattgaaaaagtgg 45456219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 52933776 - 52933833
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaag 58  Q
    ||||||||||||||||||||| ||||||||||| || ||||||| | |||||||||||    
T  52933776 ttgaatgagtgttgaataagagagagaaaatgacgtggagtgttaggaattgaaaaag 52933833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 52941411 - 52941468
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaag 58  Q
    ||||||||||||||||||||| ||||||||||| || ||||||| | |||||||||||    
T  52941411 ttgaatgagtgttgaataagagagagaaaatgacgtggagtgttaggaattgaaaaag 52941468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 31159449 - 31159381
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttga 68  Q
    ||||||| ||||||||| |||| |||||||||||||| ||||||||| |||||||||||| ||| ||||    
T  31159449 ttgaatgggtgttgaattaagagagagaaaatgatgtggagtgttgggaattgaaaaagtagatgttga 31159381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 20584859 - 20584918
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtg 60  Q
    |||||| |||||| |||||||  ||||||||||||| ||||||||| |||||||||||||    
T  20584859 ttgaataagtgttaaataagagtgagaaaatgatgtggagtgttgggaattgaaaaagtg 20584918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 51494479 - 51494586
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattggggat 99  Q
    |||||||| |||||||| |||| |||||||||||||| ||||||||  |||| ||||||||| | ||||| | |||||||| | ||| |||||||   ||    
T  51494479 ttgaatgaatgttgaattaagagagagaaaatgatgtggagtgttgagaattaaaaaagtgggtgttgaaggttgttgaatatattttaccattgtaaat 51494578  T
Q  100 ggtcttaa 107  Q
    ||||||||    
T  51494579 ggtcttaa 51494586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 45623540 - 45623605
Alignment:
Q  4 aatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttga 68  Q
    |||||||||||||| |||| |||||||||||||| ||||||| | |||||||||||| ||| ||||    
T  45623540 aatgagtgttgaattaagagagagaaaatgatgtggagtgttaggaattgaaaaagtagatgttga 45623605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 23092830 - 23092770
Alignment:
Q  2 tgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtgg 61  Q
    |||||| ||||||||| |||| ||||||||||| || ||||||||| ||||||||||||||    
T  23092830 tgaatgggtgttgaattaagagagagaaaatgacgtggagtgttgggaattgaaaaagtgg 23092770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 39149137 - 39149093
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttg 45  Q
    |||||||| | |||||||||| |||||||||||||||||||||||    
T  39149137 ttgaatgaatattgaataagatagagaaaatgatgtagagtgttg 39149093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 43739042 - 43738950
Alignment:
Q  1 ttgaatgagtgttgaataagaa-agagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccat 92  Q
    |||||| |||||||||| | || ||| ||||| | ||||||||||| ||||||||||| || ||  |||| | ||||||||||||||||||||    
T  43739042 ttgaataagtgttgaattaaaagagaaaaaataacgtagagtgttgaaaattgaaaaaatgaatgctgaaagttgttgaatgtgtttaaccat 43738950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 14096753 - 14096694
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagt 59  Q
    ||||||||||||||||| |||| ||| |||||||| | ||||||||| ||||||||||||    
T  14096753 ttgaatgagtgttgaattaagagagataaaatgatttggagtgttgggaattgaaaaagt 14096694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 37646567 - 37646626
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagt 59  Q
    ||||||| ||||||||| |||| |||||||||||||| ||||||||| |||| |||||||    
T  37646567 ttgaatgggtgttgaattaagagagagaaaatgatgtggagtgttgggaattaaaaaagt 37646626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 44929298 - 44929368
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatg 71  Q
    ||||||||||||||||||| | |||||||||||| |  | |||||  |||||||||| ||||| |||||||    
T  44929298 ttgaatgagtgttgaataaaagagagaaaatgatttgaaatgttgagaattgaaaaaatggatgttgaatg 44929368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 37822632 - 37822571
Alignment:
Q  1 ttgaatgagtgttgaat-aagaa-agagaaaatgatgtagagtgttggaaattgaaaaagtg 60  Q
    ||||||||||||||||| ||||  |||||||||||||| ||||||||  |||||||||||||    
T  37822632 ttgaatgagtgttgaattaagaggagagaaaatgatgtggagtgttgagaattgaaaaagtg 37822571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 29919424 - 29919364
Alignment:
Q  9 gtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttga 68  Q
    ||||||||| |||| |||||||||||| | ||||||||| |||||||||||| ||| ||||    
T  29919424 gtgttgaattaagagagagaaaatgatatggagtgttgggaattgaaaaagtagatgttga 29919364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 37691297 - 37691357
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtg 60  Q
    |||||||  |||||||| |||| ||||||||| |||| ||||||||| |||||||||||||    
T  37691297 ttgaatggatgttgaattaagagagagaaaataatgtggagtgttgggaattgaaaaagtg 37691357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 29428526 - 29428598
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggt 73  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||| |||||||||    
T  29428526 ttgaatgagtgttgaataagagagagaaaatgatgtggagtgttgggaattgaaaaagtggatgttgaatggt 29428598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 631582 - 631477
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattggggat 99  Q
    ||||||||||||||||| |||| |||||||||||||| ||||||||| |||||||||||||| | ||||||||| || | |||||||||||||||  |||    
T  631582 ttgaatgagtgttgaatgaagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatggtatt-attgtgtttaaccattgtagat 631484  T
Q  100 ggtctta 106  Q
    |||||||    
T  631483 ggtctta 631477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 8669954 - 8669860
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    ||||||| ||||||||| |||| ||||||||| ||||  ||||||||||||||||||||||||| ||||| | |||||||||| ||| |||||||    
T  8669954 ttgaatgggtgttgaattaagagagagaaaataatgtgaagtgttggaaattgaaaaagtggatgttgaaggttgttgaatgtattttaccattg 8669860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 6380497 - 6380569
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtg 74  Q
    ||||||| ||||||||||||| |||||||||||||| ||||||||| |||||||||||||| | ||||||||||    
T  6380497 ttgaatgtgtgttgaataagagagagaaaatgatgtggagtgttgggaattgaaaaagtgg-tgttgaatggtg 6380569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 10883936 - 10883868
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttga 68  Q
    ||||||| ||||||||| |||| |||||||||||||| |||||||||||||||||||||||||| ||||    
T  10883936 ttgaatgggtgttgaattaagagagagaaaatgatgtggagtgttggaaattgaaaaagtggatgttga 10883868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 197868 - 197775
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    ||||||| ||||||||| |||| ||||||||||| || ||||||||| |||||||||||||||| ||||||||| || | |||||| ||||||||    
T  197868 ttgaatgggtgttgaattaagagagagaaaatgacgtggagtgttgggaattgaaaaagtggatgttgaatggtatt-attgtgttgaaccattg 197775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 8660623 - 8660537
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgttt 86  Q
    ||||||| ||||||||| |||| |||||||||||||| ||||||||| |||||||||||||| | ||||| | ||||||||| ||||    
T  8660623 ttgaatgtgtgttgaattaagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaaggttgttgaatgggttt 8660537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 34328345 - 34328252
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    ||||||||||||||||| |||| ||| |||||||||| ||||||||| |||||||||||||| | ||||||||| || | |||||| ||||||||    
T  34328345 ttgaatgagtgttgaattaagagagataaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatggtatt-attgtgttgaaccattg 34328252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 6725633 - 6725693
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtgg 61  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||| ||  ||||||||||    
T  6725633 ttgaatgagtgttgaataagagagagaaaatgatgtggagtgttgggaagagaaaaagtgg 6725693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 12480381 - 12480313
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttga 68  Q
    ||||||| ||||||||| ||||  ||||||||||||||||||||| |||||||||||||||||| ||||    
T  12480381 ttgaatgggtgttgaattaagagtgagaaaatgatgtagagtgtttgaaattgaaaaagtggatgttga 12480313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 22627899 - 22627819
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatg 81  Q
    |||||||  |||||||||| | |||||||||||||| ||||||||||||||||||| |||| | |||| || |||||||||    
T  22627899 ttgaatggatgttgaataaaagagagaaaatgatgtggagtgttggaaattgaaaacgtgggtgttgagtgttgttgaatg 22627819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 32359807 - 32359753
Alignment:
Q  3 gaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaa 57  Q
    ||||||||||||||||||| |||||||||||||| || |||||| ||||||||||    
T  32359807 gaatgagtgttgaataagagagagaaaatgatgtggaatgttgggaattgaaaaa 32359753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 34838645 - 34838551
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    ||||||| ||||||||| |||| |||||||||||||| ||||||||| |||||||||||||  | ||||| | | |||||||| ||| |||||||    
T  34838645 ttgaatgggtgttgaattaagagagagaaaatgatgtggagtgttgggaattgaaaaagtgagtgttgaaggttattgaatgtattttaccattg 34838551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 30446308 - 30446214
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    ||||||| ||||||||| |||| |||||||||||||| ||||||| | |||||||||| ||| | ||||  | |||||||| ||||| |||||||    
T  30446308 ttgaatgggtgttgaattaagagagagaaaatgatgtggagtgttaggaattgaaaaaatgggtgttgagggttgttgaatttgttttaccattg 30446214  T

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Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 17961288 - 17961364
Alignment:
Q  17 taagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    ||||| ||||||||| |||| ||||||||| |||||||||||||| | ||||||||| || | |||||| ||||||||    
T  17961288 taagagagagaaaattatgtggagtgttgggaattgaaaaagtgggtgttgaatggtatt-attgtgttgaaccattg 17961364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 12512977 - 12512914
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggat 63  Q
    ||||||| ||||||||| |||| ||| |||||||||| || ||||| |||||||||||||||||    
T  12512977 ttgaatgggtgttgaattaagagagaaaaaatgatgtggaatgttgaaaattgaaaaagtggat 12512914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 61
Target Start/End: Complemental strand, 24348474 - 24348436
Alignment:
Q  23 agagaaaatgatgtagagtgttggaaattgaaaaagtgg 61  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  24348474 agagaaaatgatgtggagtgttgggaattgaaaaagtgg 24348436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 12501896 - 12501835
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtgg 61  Q
    ||||||| ||||||||| |||| |||||||||||||| || |||||  ||||||||||||||    
T  12501896 ttgaatgggtgttgaattaagagagagaaaatgatgtggattgttgagaattgaaaaagtgg 12501835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 24933291 - 24933359
Alignment:
Q  1 ttgaatgagtgttgaa-taagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaa 69  Q
    |||||||||||||||| || || ||||||||| |||| ||||||| |||||||||||| ||||| |||||    
T  24933291 ttgaatgagtgttgaattatgagagagaaaataatgtggagtgtt-gaaattgaaaaaatggatgttgaa 24933359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 124077 - 124001
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaa 79  Q
    |||||||||||||||||||||  || |||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  124077 ttgaatgagtgttgaataaga--gaaaaaatgatgtggagtgttggaaattgaaaaagtggatgttgaatggtgttgaa 124001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 45)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 47750233 - 47750335
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattggggatg 100  Q
    ||||||||||||||||||||| ||||||||||| || |||||| |||| |||||||||||||| |||||||||||||||||   | |||||||||||||     
T  47750233 ttgaatgagtgttgaataagagagagaaaatgacgtggagtgtgggaa-ttgaaaaagtggatgttgaatggtgttgaatggtataaaccattggggatt 47750331  T
Q  101 gtct 104  Q
    ||||    
T  47750332 gtct 47750335  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 23540433 - 23540527
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    ||||||| ||||||||| |||| |||||||||||||| |||||||||||||||||||||||| | ||||| | |||||||| |||||||||||||    
T  23540433 ttgaatgggtgttgaattaagagagagaaaatgatgttgagtgttggaaattgaaaaagtgggtgttgaaggttgttgaatatgtttaaccattg 23540527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 30 - 107
Target Start/End: Complemental strand, 35394951 - 35394874
Alignment:
Q  30 atgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattggggatggtcttaa 107  Q
    ||||||| ||||||||||||||||||| |||  | ||||||||||||||||||||||||| |||||||||||||||||    
T  35394951 atgatgtggagtgttggaaattgaaaaggtgtgtgttgaatggtgttgaatgtgtttaactattggggatggtcttaa 35394874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 39049091 - 39049159
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaa 69  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||    
T  39049091 ttgaatgaatgttgaataagaaagagaaaatgatgtggagtgttggaaattaaaaaagtggatgttgaa 39049159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 34199276 - 34199370
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    ||||||| ||||||||| |||| |||||||||||||| ||||||||| |||||||||||||||| ||||| | |||||||||| ||| |||||||    
T  34199276 ttgaatgggtgttgaattaagagagagaaaatgatgtggagtgttgggaattgaaaaagtggatgttgaaggttgttgaatgtattttaccattg 34199370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 48506613 - 48506707
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    ||||||||||||||||| |||| |||||||||||||| |||||||| ||||||||||||||||| ||||  | |||||||| ||||| |||||||    
T  48506613 ttgaatgagtgttgaattaagagagagaaaatgatgtggagtgttgaaaattgaaaaagtggatgttgagggttgttgaatttgttttaccattg 48506707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 31848782 - 31848838
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaa 57  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  31848782 ttgaatgagtgttgaataagagagagaaaatgatgtggagtgttggaaattgaaaaa 31848838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 6290665 - 6290571
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    ||||||| ||||||||| |||| |||||||||||||| ||||||||| |||||||||||||| | ||||| | |||||||||| ||| |||||||    
T  6290665 ttgaatgggtgttgaattaagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaaggttgttgaatgtattttaccattg 6290571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 33077881 - 33077974
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    ||||||| ||||| ||| | | |||||||||||||| |||||||||||||||||||||||||| ||||  | |||||||| ||||| |||||||    
T  33077881 ttgaatgggtgttaaattaaagagagaaaatgatgtggagtgttggaaattgaaaaagtggatattgagggttgttgaatttgttttaccattg 33077974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 39113763 - 39113856
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    ||||||||||||||||||| | |||||||||||||| ||||||||| ||||||||||||   | |||| || |||||||||| ||| |||||||    
T  39113763 ttgaatgagtgttgaataaaagagagaaaatgatgtggagtgttgggaattgaaaaagttagtgttgagtgttgttgaatgtttttcaccattg 39113856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 40721100 - 40721007
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccatt 93  Q
    ||||||| ||||||||| |||| |||||||||||||| ||||||||| |||||||||||||| | ||||||  |||||||||| ||| ||||||    
T  40721100 ttgaatgggtgttgaattaagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatattgttgaatgtattttaccatt 40721007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 12158202 - 12158134
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaa 69  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||| ||| ||||| |||||| |||||    
T  12158202 ttgaatgagtgttgaataagagagagaaaatgatgtggagtgttgggaatcgaaaatgtggatgttgaa 12158134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 53184104 - 53184164
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtgg 61  Q
    ||||||||||||||||||||| ||||||||||||||  |||||||| ||||||||||||||    
T  53184104 ttgaatgagtgttgaataagagagagaaaatgatgtgaagtgttgggaattgaaaaagtgg 53184164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 54356904 - 54356972
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaa 69  Q
    ||||||| ||||||||||||| | |||||||||||| ||||||||| |||||||||||||||| |||||    
T  54356904 ttgaatgtgtgttgaataagagaaagaaaatgatgtggagtgttgggaattgaaaaagtggatgttgaa 54356972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 48403907 - 48403986
Alignment:
Q  1 ttgaatgagtgttgaataa-gaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaa 79  Q
    ||||||||||||||||| | || |||||||||||||| ||||||||||||||||||||||| || ||||| ||| |||||    
T  48403907 ttgaatgagtgttgaattatgagagagaaaatgatgtggagtgttggaaattgaaaaagtgaatgttgaagggtattgaa 48403986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 94
Target Start/End: Original strand, 3618468 - 3618554
Alignment:
Q  9 gtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    ||||||||| |||| |||||||||||||| ||||||||| |||||||||||||| | ||||| | |||||||| ||||| |||||||    
T  3618468 gtgttgaattaagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaaggttgttgaatttgttttaccattg 3618554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 46917518 - 46917611
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    ||||||| ||||||||| |||| |||||||||||||| ||||||||| |||||||||||||| | ||||||||| || | |||||| ||||||||    
T  46917518 ttgaatgggtgttgaattaagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatggtatt-attgtgttgaaccattg 46917611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 56054082 - 56053988
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    ||||||| |||| |||| |||| |||||||||||||| ||||||||| |||||||||||||||| || |  | |||||||| |||||||||||||    
T  56054082 ttgaatgggtgtagaattaagagagagaaaatgatgtggagtgttgggaattgaaaaagtggatgttaagggttgttgaatatgtttaaccattg 56053988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 2215289 - 2215362
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggt 73  Q
    ||||||||||||||||| |||| ||||||||| |||| ||||||||| |||||||||||||| | |||||||||    
T  2215289 ttgaatgagtgttgaattaagagagagaaaattatgtggagtgttgggaattgaaaaagtgggtgttgaatggt 2215362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 33604722 - 33604661
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtgg 61  Q
    ||||||||||||||||| |||| |||||||||||||| ||||||||| ||||||||||||||    
T  33604722 ttgaatgagtgttgaattaagatagagaaaatgatgtggagtgttgggaattgaaaaagtgg 33604661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 3533314 - 3533394
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaat 80  Q
    ||||||| ||||||||| |||| |||||||||||||| ||||||||| |||||||||||||| | ||||| | ||||||||    
T  3533314 ttgaatgggtgttgaattaagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaaggttgttgaat 3533394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 10089911 - 10089840
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggt 73  Q
    ||||||||||||||||||||| ||| |||||||||| |||| ||| ||||||||||||||| | |||||||||    
T  10089911 ttgaatgagtgttgaataagagaga-aaaatgatgtggagtattgaaaattgaaaaagtgggtgttgaatggt 10089840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 39533289 - 39533349
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtgg 61  Q
    |||||||| |||||||||||||||||||||||| || || | |||||||||||||||||||    
T  39533289 ttgaatgaatgttgaataagaaagagaaaatgacgtggaatattggaaattgaaaaagtgg 39533349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 45081419 - 45081498
Alignment:
Q  1 ttgaatgagtgttgaataa-gaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaa 79  Q
    ||||||||||||||||| | || |||||||||||||| ||||||||| |||||||||||||| | ||||| ||| |||||    
T  45081419 ttgaatgagtgttgaattatgagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaagggtattgaa 45081498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 11 - 81
Target Start/End: Original strand, 55933 - 56003
Alignment:
Q  11 gttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatg 81  Q
    ||||||||||| | |||||||||||  |||||||||||||||||||||||  | || ||||||||||||||    
T  55933 gttgaataagagaaagaaaatgatgcggagtgttggaaattgaaaaagtgagtgttcaatggtgttgaatg 56003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 8991848 - 8991766
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgt 82  Q
    ||||||| ||||||||| |||| |||||||||||||| ||||||||| |||| ||||||||| | ||||| | ||||||||||    
T  8991848 ttgaatgggtgttgaattaagagagagaaaatgatgtggagtgttgggaattcaaaaagtgggtgttgaaggttgttgaatgt 8991766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 19409195 - 19409125
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatg 71  Q
    |||||||| | |||||||||| ||||||||| |||| |||| ||||||||||||||||||| | |||||||    
T  19409195 ttgaatgaatattgaataagagagagaaaataatgttgagttttggaaattgaaaaagtgggtgttgaatg 19409125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 28899397 - 28899303
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattg 94  Q
    ||||||| ||||||||| |||| |||||||| ||||| || | |||| |||||||||||||| | ||||  | ||||||||||||||||||||||    
T  28899397 ttgaatgggtgttgaattaagagagagaaaacgatgtggaatattgggaattgaaaaagtgggtgttgagggttgttgaatgtgtttaaccattg 28899303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 40596770 - 40596844
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgt 75  Q
    |||||| |||||||||||| | ||||||||||| || |||||||| ||||||||||| || || |||||||||||    
T  40596770 ttgaataagtgttgaataaaagagagaaaatgacgtggagtgttgaaaattgaaaaaatgaatcttgaatggtgt 40596844  T

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Target: chr4; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 38173616 - 38173559
Alignment:
Q  5 atgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtgg 61  Q
    ||||||||||||| |||| |||||||||||||| ||||||||| ||||||||||||||    
T  38173616 atgagtgttgaattaagagagagaaaatgatgtggagtgttgggaattgaaaaagtgg 38173559  T

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Target: chr4; HSP #31
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 23389936 - 23390040
Alignment:
Q  1 ttgaatgagtgttgaataa-gaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccattggggat 99  Q
    |||||||||| |||||| | || ||||||||| |||| ||||||||| |||||||||||||  | ||||| ||| || ||| | ||| ||||||||||||    
T  23389936 ttgaatgagtattgaattatgagagagaaaataatgtggagtgttgggaattgaaaaagtgagtgttgaaaggtattaaattttttttaccattggggat 23390035  T
Q  100 ggtct 104  Q
    |||||    
T  23390036 ggtct 23390040  T

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Target: chr4; HSP #32
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 55560494 - 55560554
Alignment:
Q  9 gtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttga 68  Q
    ||||||||| |||| |||||||||||||| ||||||||| |||||||||||||||| ||||    
T  55560494 gtgttgaattaagagagagaaaatgatgtggagtgttgggaattgaaaaagtggatgttga 55560554  T

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Target: chr4; HSP #33
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 35809228 - 35809149
Alignment:
Q  1 ttgaatgagtgttgaataa-gaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaa 79  Q
    ||||||| ||||||||| | || |||||||||||||| || |||||| |||||||||||||||| ||||| ||| |||||    
T  35809228 ttgaatgggtgttgaattatgagagagaaaatgatgtggaatgttgggaattgaaaaagtggatgttgaagggtattgaa 35809149  T

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Target: chr4; HSP #34
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 52017409 - 52017350
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagt 59  Q
    ||||||||||||||||| |||| |||||||||||||| ||||||| | ||||||||||||    
T  52017409 ttgaatgagtgttgaattaagagagagaaaatgatgttgagtgttaggaattgaaaaagt 52017350  T

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Target: chr4; HSP #35
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 55408577 - 55408636
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtg 60  Q
    ||||||||||||||||||||| |||||||||||||| ||||| ||| ||  |||||||||    
T  55408577 ttgaatgagtgttgaataagagagagaaaatgatgtggagtgctgggaagagaaaaagtg 55408636  T

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Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 16020912 - 16020819
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgtttaaccatt 93  Q
    |||||||  |||||||| |||| ||||||||| |||| ||||||||| |||||||||||||| | ||||| | |||||||| |||  |||||||    
T  16020912 ttgaatggatgttgaattaagagagagaaaataatgtggagtgttgggaattgaaaaagtgggtgttgaaggttgttgaatttgtggaaccatt 16020819  T

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Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 33523335 - 33523267
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttga 68  Q
    |||||||  |||||||| |||| |||||||||||||| || |||||| |||||||||||||||| ||||    
T  33523335 ttgaatggatgttgaattaagagagagaaaatgatgtggaatgttgggaattgaaaaagtggatgttga 33523267  T

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Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 13094397 - 13094476
Alignment:
Q  1 ttgaatgagtgttgaataa-gaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaa 79  Q
    ||||||| ||||||||| | || |||||||||||||| ||||||||| |||||||||| ||| | ||||| ||| |||||    
T  13094397 ttgaatgggtgttgaattatgagagagaaaatgatgtggagtgttgggaattgaaaaaatgggtgttgaagggtattgaa 13094476  T

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Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 61
Target Start/End: Complemental strand, 4981551 - 4981513
Alignment:
Q  23 agagaaaatgatgtagagtgttggaaattgaaaaagtgg 61  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  4981551 agagaaaatgatgtggagtgttgggaattgaaaaagtgg 4981513  T

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Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 86
Target Start/End: Original strand, 16175046 - 16175108
Alignment:
Q  24 gagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgtgttt 86  Q
    ||||||||||||| |||||||| ||||||||||| ||| | ||||| | |||||||| |||||    
T  16175046 gagaaaatgatgtggagtgttgaaaattgaaaaaatgggtgttgaaggttgttgaatttgttt 16175108  T

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Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 33526781 - 33526711
Alignment:
Q  1 ttgaatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatg 71  Q
    |||||||||| |||||||| | | ||||||||||   ||||||||  |||||||||||||||| |||||||    
T  33526781 ttgaatgagtattgaataaaagaaagaaaatgatacggagtgttgagaattgaaaaagtggatgttgaatg 33526711  T

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Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 13110626 - 13110565
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtgg 61  Q
    ||||||| ||||||||| |||| ||| |||||| ||| ||||||||| ||||||||||||||    
T  13110626 ttgaatgggtgttgaattaagagagaaaaaatgttgtggagtgttgggaattgaaaaagtgg 13110565  T

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Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 34564185 - 34564108
Alignment:
Q  4 aatgagtgttgaataagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatg 81  Q
    ||||| |||||||||||| ||||||||| || || |||||||  |||| ||||| ||||| ||||||  |||||||||    
T  34564185 aatgaatgttgaataagagagagaaaataatataaagtgttgagaattaaaaaaatggatgttgaataatgttgaatg 34564108  T

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Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 17329943 - 17329998
Alignment:
Q  23 agagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaa 79  Q
    |||||||||||||| || |||||||| |||||||||||||| ||||| ||| |||||    
T  17329943 agagaaaatgatgtggaatgttggaa-ttgaaaaagtggatgttgaagggtattgaa 17329998  T

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Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 19272825 - 19272789
Alignment:
Q  23 agagaaaatgatgtagagtgttggaaattgaaaaagt 59  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  19272825 agagaaaatgatgtggagtgttgggaattgaaaaagt 19272789  T

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Target: scaffold0054 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 57750 - 57832
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtggattttgaatggtgttgaatgt 82  Q
    ||||||| ||||||||| |||| |||||||||||||| ||||||||| |||||||||||||| | ||||  | ||||||||||    
T  57750 ttgaatgggtgttgaattaagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgagggttgttgaatgt 57832  T

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Target: scaffold0362 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 5330 - 5391
Alignment:
Q  1 ttgaatgagtgttgaat-aagaaagagaaaatgatgtagagtgttggaaattgaaaaagtgg 61  Q
    |||||||  |||||||| ||||||||||||||||||| ||||||||| ||||||||||||||    
T  5330 ttgaatggatgttgaattaagaaagagaaaatgatgtggagtgttgggaattgaaaaagtgg 5391  T

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Target: scaffold0016 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 66079 - 66138
Alignment:
Q  1 ttgaatgagtgttgaataa-gaaagagaaaatgatgtagagtgttggaaattgaaaaagt 59  Q
    ||||||||||||||||| | || |||||||||||||| ||||||||  ||||||||||||    
T  66079 ttgaatgagtgttgaattatgagagagaaaatgatgtggagtgttgagaattgaaaaagt 66138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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