View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1698_low_1 (Length: 546)
Name: NF1698_low_1
Description: NF1698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1698_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 234 - 517
Target Start/End: Complemental strand, 33495317 - 33495035
Alignment:
| Q |
234 |
catggagagggtcatgaacatggccatgatagcagcagcagtgacagtgattagatcttaatttcactgcttcatcatgttgagaggtaattaaaatttt |
333 |
Q |
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| T |
33495317 |
catggagagggtcatgaacatggtcatgatagcagcagcagtgacagtgattagatcttaatttcactgcttcatcatgttgagaggtaattaaaatttt |
33495218 |
T |
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| Q |
334 |
gttttgctttatgacccttttatcagaattttacgtgattactatatataa-ttcgttactaacatgaatgtctatccgcttttttgtatcaaaattaat |
432 |
Q |
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| T |
33495217 |
gttttgctttatgacccttttatcagaattttacgtgattactatatataatttcgttactaacatgaatgtctatccgcttttttgtatcaaaattaat |
33495118 |
T |
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| Q |
433 |
aatacaagtttcaaaattttatcttagattgttnnnnnnnnntcaattatttgattggaaatgaatgaaaaatagttgcacacaa |
517 |
Q |
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| T |
33495117 |
aatacaagtttcaaaattttatctttgattgtt--aaaaaaatcaattatttgattggaaatgaatgaaaaatagttgcacacaa |
33495035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 33495550 - 33495348
Alignment:
| Q |
1 |
aacatggacatgtaggaggagaacaccatggtgagtacaaaggagaacaacatggatttgtaggaggacatggtggtgagcacaaaggagagcaacatgg |
100 |
Q |
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| T |
33495550 |
aacatggacatgtaggaggagaacaccacggtgagtacaaaggagaacaacatggatttgtaggaggacatggtggtgagcacaaaggagagcaacatgg |
33495451 |
T |
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| Q |
101 |
atttggtcatggagaccacaaggaaggacaccatggagaagagcacaaggagggatttgttgacaagatcaaggacaagattcatggtgaaggtgcagat |
200 |
Q |
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| T |
33495450 |
atttggtcatggagaccacaaggaaggacaccatggggaagagcacaaggagggatttgttgacaagatcaaggacaagattcatggtgaaggtgcagat |
33495351 |
T |
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| Q |
201 |
ggt |
203 |
Q |
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||| |
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| T |
33495350 |
ggt |
33495348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 292
Target Start/End: Original strand, 9757719 - 9757748
Alignment:
| Q |
263 |
tagcagcagcagtgacagtgattagatctt |
292 |
Q |
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| T |
9757719 |
tagcagcagcagtgacagtgattagatctt |
9757748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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