View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1698_low_12 (Length: 360)
Name: NF1698_low_12
Description: NF1698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1698_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 15 - 296
Target Start/End: Complemental strand, 31951999 - 31951719
Alignment:
| Q |
15 |
ataaaacagtccacaaaaatattagcctatttggataatacaaattattgcagtcattagatgcttttgaaactctaaagatcctgttaaatgtgtaaaa |
114 |
Q |
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| T |
31951999 |
ataaaacagttcacaaatatattagcctatttggataatacaaattattgcagtcattagatgcttttgaaaatctaa-gatcctgttaaatgtgtaaaa |
31951901 |
T |
|
| Q |
115 |
taattagtccacaaaattgtcacttttgtttgattctattttacttgatatctctttatcaaataatttgttgtcgttagaatttaggtcacctttggaa |
214 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
31951900 |
taaatagtccacaaaattgtcacttttgtttgattctattttacttgatatctctttatcaaataatttgttgtcgttagaatttaggtcacctttgaaa |
31951801 |
T |
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| Q |
215 |
tatatgttcataatctatatattctttgtatggattggcctctaatttattttacaagtgtcgtgaaattaaatttattgat |
296 |
Q |
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| T |
31951800 |
tatatgttcataatctatatgttctttgtatggattggcctctaatttattttacaagtgtcgtgaaattaaatttattgat |
31951719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 16 - 296
Target Start/End: Complemental strand, 55320899 - 55320620
Alignment:
| Q |
16 |
taaaacagtccacaaaaatattagcctatttggataatacaaattattgcagtcattagatgcttttgaaactctaaagatcctgttaaatgtgtaaaat |
115 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
55320899 |
taaaacagtccacaaaaatattagcctatttggacaatacaaattattgcagtcattagatgcttttgaaaatctaa-gatcctgttaaatgtgtaaaat |
55320801 |
T |
|
| Q |
116 |
aattagtccacaaaattgtcacttttgtttgattctattttacttgatatctctttatcaaataatttgttgtcgttagaatttaggtcacctttggaat |
215 |
Q |
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| T |
55320800 |
aaatagtccacaaaattgtcactttagtttgattctattttacttgatatctctttatcaaataatttgttgtcattagaatttaggatacctttggaat |
55320701 |
T |
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| Q |
216 |
atatgttcataatctatatattctttgtatggattggcctctaatttattttacaagtgtcgtgaaattaaatttattgat |
296 |
Q |
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| T |
55320700 |
atatgttcataatctatatgttctttgtatggattggcctctaatttattttacaagtgtcatgaaattaaatttattgat |
55320620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 293 - 356
Target Start/End: Complemental strand, 31951276 - 31951213
Alignment:
| Q |
293 |
tgatcttaagttaggggactaaagtgctcaatataatggattaatatttcacttgcctatgcta |
356 |
Q |
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| T |
31951276 |
tgatcttaagttaggggactaaagtgctcaatataatggattaatatttcacttgcctttgcta |
31951213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 293 - 356
Target Start/End: Complemental strand, 55320138 - 55320075
Alignment:
| Q |
293 |
tgatcttaagttaggggactaaagtgctcaatataatggattaatatttcacttgcctatgcta |
356 |
Q |
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| T |
55320138 |
tgatcttaagttaggggactaaagtgctcaatataatggattaatatttcacttgcctttgcta |
55320075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 31606986 - 31607022
Alignment:
| Q |
254 |
ctctaatttattttacaagtgtcgtgaaattaaattt |
290 |
Q |
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| T |
31606986 |
ctctaatttattttacaagtgtcatgaaattaaattt |
31607022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 293 - 356
Target Start/End: Original strand, 2778272 - 2778335
Alignment:
| Q |
293 |
tgatcttaagttaggggactaaagtgctcaatataatggattaatatttcacttgcctatgcta |
356 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||| ||||| |
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| T |
2778272 |
tgatcttaagttagtggactaaagtgctcaatataatggattagtatttcacctgcctttgcta |
2778335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 291
Target Start/End: Complemental strand, 12632157 - 12632120
Alignment:
| Q |
254 |
ctctaatttattttacaagtgtcgtgaaattaaattta |
291 |
Q |
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||||||||||||||||||||||| |||||||||||||| |
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| T |
12632157 |
ctctaatttattttacaagtgtcatgaaattaaattta |
12632120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 291
Target Start/End: Complemental strand, 45290944 - 45290907
Alignment:
| Q |
254 |
ctctaatttattttacaagtgtcgtgaaattaaattta |
291 |
Q |
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||||||||||||||||||||||| |||||||||||||| |
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| T |
45290944 |
ctctaatttattttacaagtgtcatgaaattaaattta |
45290907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 341
Target Start/End: Original strand, 19055545 - 19055585
Alignment:
| Q |
301 |
agttaggggactaaagtgctcaatataatggattaatattt |
341 |
Q |
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|||||| || ||||||||| ||||||||||||||||||||| |
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| T |
19055545 |
agttagtgggctaaagtgcccaatataatggattaatattt |
19055585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 341
Target Start/End: Complemental strand, 50807887 - 50807847
Alignment:
| Q |
301 |
agttaggggactaaagtgctcaatataatggattaatattt |
341 |
Q |
| |
|
|||||| ||| |||||||| ||||||||||||||||||||| |
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| T |
50807887 |
agttagtggaataaagtgcccaatataatggattaatattt |
50807847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 341
Target Start/End: Original strand, 50867991 - 50868031
Alignment:
| Q |
301 |
agttaggggactaaagtgctcaatataatggattaatattt |
341 |
Q |
| |
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|||||| ||| |||||||| ||||||||||||||||||||| |
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| T |
50867991 |
agttagtggaataaagtgcccaatataatggattaatattt |
50868031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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