View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1698_low_16 (Length: 316)
Name: NF1698_low_16
Description: NF1698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1698_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 11 - 298
Target Start/End: Complemental strand, 42039770 - 42039483
Alignment:
| Q |
11 |
cacagaataacaataatttgttgcaacccagaaagtacatagataacaattatttatacttaggatacattaataatagaacgcgtgaaatgatgaaaaa |
110 |
Q |
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| T |
42039770 |
cacagaataacaataatttgttgcaacccagaacgtacatagataacaattatttatacttaggatacattaataatagaacgcgtgaaatgatgaaaca |
42039671 |
T |
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| Q |
111 |
gacttggaaataacatgatgcctcatgactcaaaaaatatccacctcaataaagaataacctaggacggtttttgaggtgaaactcttcaacaggaagct |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42039670 |
gacttggaaataacatgatgcctcatgactcaaaaaatatccacctcaataaagaataacctaggacggtttttgaggtgaaactcttcaacaggaagct |
42039571 |
T |
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| Q |
211 |
gtgattggcactggttctactaaagccttcgtgccgccggtaactccattttctcctttatgaatcttgtcggccgccatggcaacaa |
298 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42039570 |
gtgattggcactggttctactaaagccttcgtgccaccggtaactccattttctcctttatgaatcttgtcggccgccatggcaacaa |
42039483 |
T |
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