View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1698_low_2 (Length: 539)
Name: NF1698_low_2
Description: NF1698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1698_low_2 |
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| [»] scaffold0221 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 330 - 523
Target Start/End: Complemental strand, 40889404 - 40889211
Alignment:
| Q |
330 |
atagtgagcctgtgtgtttgtgcacgttttaggaggttagtggattgacaagttcctccataacaataacccacgtttaggattgtgtgagtggagtatt |
429 |
Q |
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| T |
40889404 |
atagtgagcctgtgtgtttgtgcacgttttaggaggttagtggattgacaagttcctccataacaataacccacgtttaggattgtgtgagtggagtatt |
40889305 |
T |
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| Q |
430 |
tttcttttagttagttattttaggctatcacaattcaaattgcaaaatcctttatttgtttctctaactcccataaccgtgctccttgccgtct |
523 |
Q |
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| T |
40889304 |
tttcttttagttagttattttaggctatcacaattcatattgcaaaatcctttatttgtttctctaactcccataaccgtgctccttgccgtct |
40889211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 140 - 265
Target Start/End: Complemental strand, 40889598 - 40889473
Alignment:
| Q |
140 |
agtggtaaactagtcttacctattctactaacgcaacacctgagaccaatagcatagttatatgatttacttttatttgaaaagtagaaaggggttagta |
239 |
Q |
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| T |
40889598 |
agtggtaaactagtcttacctattctactaacgcaacacctgataccaatagcatagttatatgatttacttttatttgaaaagtagaaaggggttagta |
40889499 |
T |
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| Q |
240 |
aggttcttttgtgtgcagaatcaagt |
265 |
Q |
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| T |
40889498 |
aggttcttttgtgtgcagaatcaagt |
40889473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 381 - 519
Target Start/End: Complemental strand, 18368174 - 18368036
Alignment:
| Q |
381 |
gttcctccataacaataacccacgtttaggattgtgtgagtggagtatttttcttttagttagttattttaggctatcacaattcaaattgcaaaatcct |
480 |
Q |
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| T |
18368174 |
gttcctccataaccataacccacgtttaggattgattgagtggagtatcattctcttaagtagttattttagtctatctcaattcatattgcaaaatccc |
18368075 |
T |
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| Q |
481 |
ttatttgtttctctaactcccataaccgtgctccttgcc |
519 |
Q |
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| T |
18368074 |
ttatatgtttctctaactctcataatcgtgctacttgcc |
18368036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 11593153 - 11593117
Alignment:
| Q |
103 |
gtcagttcaccgggaggatcgccctcccaattcgaag |
139 |
Q |
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| T |
11593153 |
gtcagttcattgggaggatcgccctcccaattcgaag |
11593117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 381 - 517
Target Start/End: Complemental strand, 35762893 - 35762757
Alignment:
| Q |
381 |
gttcctccataacaataacccacgtttaggattgtgtgagtggagtatttttcttttagttagttattttaggctatcacaattcaaattgcaaaatcct |
480 |
Q |
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| T |
35762893 |
gttcctccataaccataacccacatttaggattgattgagtggagtattattctcttaagtagttattttagtccatctcaattcatattgcaaaatccc |
35762794 |
T |
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| Q |
481 |
ttatttgtttctctaactcccataaccgtgctccttg |
517 |
Q |
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| T |
35762793 |
ttatatgtttctctaactctcgtaaccgtgctacttg |
35762757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 381 - 519
Target Start/End: Complemental strand, 23261428 - 23261290
Alignment:
| Q |
381 |
gttcctccataacaataacccacgtttaggattgtgtgagtggagtatttttcttttagttagttattttaggctatcacaattcaaattgcaaaatcct |
480 |
Q |
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| T |
23261428 |
gttcctccataaccataacccacgtttaggattgattgagtggagtaccattctcttaagtagttattttagtccatctcaattcatattgcaaaatccc |
23261329 |
T |
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| Q |
481 |
ttatttgtttctctaactcccataaccgtgctccttgcc |
519 |
Q |
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| T |
23261328 |
ttatatgtttctctaactctcataaacgtgctacttgcc |
23261290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0221 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0221
Description:
Target: scaffold0221; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 38 - 80
Target Start/End: Complemental strand, 25202 - 25160
Alignment:
| Q |
38 |
tcgacgtggttctctcaagcgccctagtatactctacttgttc |
80 |
Q |
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| T |
25202 |
tcgacatggttctctcaagcgccctagtatactctacttgttc |
25160 |
T |
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