View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1698_low_21 (Length: 302)
Name: NF1698_low_21
Description: NF1698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1698_low_21 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 170 - 302
Target Start/End: Original strand, 30096971 - 30097103
Alignment:
| Q |
170 |
gtttctagtatagaataagttgaaatatttaatctctgcaaggagtatttcacatcactttttatcctttccactaaacatgaatgcttcttttccactt |
269 |
Q |
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| T |
30096971 |
gtttcaagtacagagtaagttgaaatatttaatctctgcaaggagtatttcacatcactttttatcctttccactaaatatgaatgcttcttttccactt |
30097070 |
T |
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| Q |
270 |
aactttaccagcacatcacattgaatattcctt |
302 |
Q |
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| T |
30097071 |
aactttaccagcacatcacattgaatattcctt |
30097103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 20 - 179
Target Start/End: Original strand, 30088524 - 30088683
Alignment:
| Q |
20 |
tttactagtcggttttgtaagattgatttagattcgatccaaattatacttatgtgtgtggatcaatttggtttaagttttttcacatctaattgtnnnn |
119 |
Q |
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| T |
30088524 |
tttactaatcagttttgtaaggttgacttagattcgatctaaattatacttatgtgtgtggatcaatttggtttaagttttttcacaactaattgtaaaa |
30088623 |
T |
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| Q |
120 |
nnnnnnnngttgaatccgtcttgcaataataatgagtattctaattaatagtttctagta |
179 |
Q |
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| T |
30088624 |
aactaaaagttgaatccgtcttgcaataataatgagtattctaattaatagtttcaagta |
30088683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 30394721 - 30394765
Alignment:
| Q |
18 |
actttactagtcggttttgtaagattgatttagattcgatccaaa |
62 |
Q |
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| T |
30394721 |
actttacaagtcgattttgtaagattgaattagattcaatccaaa |
30394765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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