View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1698_low_30 (Length: 245)
Name: NF1698_low_30
Description: NF1698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1698_low_30 |
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| [»] scaffold0026 (2 HSPs) |
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Alignment Details
Target: scaffold0026 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 101119 - 101325
Alignment:
| Q |
15 |
atgaaaaatgcatgggcagaagctcatgatcagctggccaatgccatcaaagctgaaatgaaagaagctcatgatcaactggacagtgccaatttgataa |
114 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
101119 |
atgaaaaatgcatgggcagaagctcatgatcggctggccaatgccatcaaagctgaaatgaaagaagctcatgatcaactggacagtgccaatttgataa |
101218 |
T |
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| Q |
115 |
gtaattttaaattttaaatataattgaatttcctaattcattttcctgcaacttaattgatcagggagagcgtgtgtgggagcaactacgtaccaatggt |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| | |
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| T |
101219 |
gtaattttaaattttaaatataattgaatttcctaattcattttcctgcaacttaattgataagggagagcgtgtgtgggagcaacaacgtaccaatgat |
101318 |
T |
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| Q |
215 |
tcatgag |
221 |
Q |
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||||||| |
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| T |
101319 |
tcatgag |
101325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 103266 - 103330
Alignment:
| Q |
19 |
aaaatgcatgggcagaagctcatgatcagctggccaatgccatcaaagctgaaatgaaagaagct |
83 |
Q |
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|||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||| ||||| |
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| T |
103266 |
aaaatgcatggggagaagctcatgatcaactcgccaatgccatcaaagctgaaatgaaaaaagct |
103330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 15 - 152
Target Start/End: Complemental strand, 25849298 - 25849161
Alignment:
| Q |
15 |
atgaaaaatgcatgggcagaagctcatgatcagctggccaatgccatcaaagctgaaatgaaagaagctcatgatcaactggacagtgccaatttgataa |
114 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
25849298 |
atgaaaaatgcatgggcagaagctcatgatcagcttgccaatgccatcaaagttgaaatgaaagaagctcatgatcagatggacaatgccaatttgataa |
25849199 |
T |
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| Q |
115 |
gtaattttaaattttaaatataattgaatttcctaatt |
152 |
Q |
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| T |
25849198 |
gtaattttaaattttaaatataattgaatgttctaatt |
25849161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 25847236 - 25847178
Alignment:
| Q |
19 |
aaaatgcatgggcagaagctcatgatcagctggccaatgccatcaaagctgaaatgaaa |
77 |
Q |
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|||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
25847236 |
aaaatgcatggggagaagcccatgatcaactggccaatgccatcaaagctgaaatgaaa |
25847178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 25844980 - 25844918
Alignment:
| Q |
15 |
atgaaaaatgcatgggcagaagctcatgatcagctggccaatgccatcaaagctgaaatgaaa |
77 |
Q |
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||||| |||||||||| ||||||| |||||||| ||| |||||| |||||| ||||||||||| |
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| T |
25844980 |
atgaagaatgcatggggagaagcttatgatcagttggtcaatgcaatcaaatctgaaatgaaa |
25844918 |
T |
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