View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1698_low_31 (Length: 239)
Name: NF1698_low_31
Description: NF1698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1698_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 16522178 - 16522394
Alignment:
| Q |
1 |
atgctctagagaatctaagatacaatcattagtacttaagaacttagaataatagcattagcaagctaagaactcaaagatacttcaaaagtcctaatga |
100 |
Q |
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| T |
16522178 |
atgctctagagaatctaagatacaatcactagtacttaagaacttagaataatagcattagcaagctaagaactcaaagatacttcaaaagtcccaatga |
16522277 |
T |
|
| Q |
101 |
acaaaaattggaaagnnnnnnnnnnntcaaattgttcataagtatatgaaaacaagagattgaaatattgcttacttgaacataacacaaccatccatat |
200 |
Q |
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||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16522278 |
acaaaaa---gaaa----aaaaaaaatcaaattgttcataagtatatgaaaacaagagattgaaatattgcttacttgaacataacacaaccatccatat |
16522370 |
T |
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| Q |
201 |
gaccaaaagatttgtaatggatac |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
16522371 |
gaccaaaagatttgtaatggatac |
16522394 |
T |
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