View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1698_low_34 (Length: 238)
Name: NF1698_low_34
Description: NF1698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1698_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 17 - 210
Target Start/End: Complemental strand, 49171111 - 49170918
Alignment:
| Q |
17 |
accagcacctcagcctgagcaggtttttactcttagtacagccactgccacaggagagtttaaaatcttatccaagttgattagagccaaaatcaatgta |
116 |
Q |
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| T |
49171111 |
accagcacctcagcctgaggaggtttttactcttagtacagccactgccacaggagagtttaaaatcttatccaagttgattagagccaaaatcaatgta |
49171012 |
T |
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| Q |
117 |
tgcgatgttccatttagagcaattcataatgtcgaatttttatcactcactgtaagttacgttaccatttaaattgcaacatggttttaaattt |
210 |
Q |
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| T |
49171011 |
tgcgatgttccgtttagagcaattcataatgtcgaatttttatcactcactgtaagttacgttaccatttaaattgcaacatggttttaaattt |
49170918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 17 - 183
Target Start/End: Original strand, 49179012 - 49179178
Alignment:
| Q |
17 |
accagcacctcagcctgagcaggtttttactcttagtacagccactgccacaggagagtttaaaatcttatccaagttgattagagccaaaatcaatgta |
116 |
Q |
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|||| ||||| ||||||| |||||||||||||||||| |||||| ||||| |||||||||||||||||| |||||||||| |||| ||||||||| | |
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| T |
49179012 |
accaacacctgagcctgatgaggtttttactcttagtaaagccaccgccactggagagtttaaaatcttacccaagttgatcagagttcaaatcaatgca |
49179111 |
T |
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| Q |
117 |
tgcgatgttccatttagagcaattcataatgtcgaatttttatcactcactgtaagttacgttacca |
183 |
Q |
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||| ||||| |||||||||||||| |||||||| |||||| |||||||||||||||| ||||||| |
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| T |
49179112 |
gacgaggttccgtttagagcaattcacaatgtcgagtttttagcactcactgtaagttaagttacca |
49179178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 238
Target Start/End: Complemental strand, 49170891 - 49170854
Alignment:
| Q |
201 |
ttttaaatttcatgagcaggcttactaatccagagatc |
238 |
Q |
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|||| ||||||||||||||||||||| ||||||||||| |
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| T |
49170891 |
ttttgaatttcatgagcaggcttactgatccagagatc |
49170854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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