View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1698_low_36 (Length: 236)

Name: NF1698_low_36

Description: NF1698

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF1698_low_36

[»] chr3 (1 HSPs)

[»] chr5 (1 HSPs)

Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 148; E-Value: 3e-78

Query Start/End: Original strand, 1 - 220

Target Start/End: Original strand, 2360631 - 2360861

Alignment:

Q	1	tgtaaatctagttcaatgtttcacaactaacatctacaaatgaatatatttcatatcctgtaaacaagaggtatatatttagcactccctaaatcaaata	100	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	2360631	tgtaaatctagttcaatgtttcacaactaacatctacaaatgcatatatttcatgtcccgtaaataagaggtatatatttagcactccctaaatcaaata	2360730	T

Q	101	atcaattttagattgcacttcgaaaaaagcatcatgtacaggaatagaagtattagta---------taaca--agatgtgatttatatataatcaatca	189	Q
		\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	2360731	atcaatttcagattgtacttcgaaaaaagcatcaagtgcaggagtagaagtattagtaaccaactatttacattagatgtgatttatatataatcaatca	2360830	T

Q	190	tatcaagtatttacattagattcataaccaa	220	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	2360831	tatcaagtatttacattagattcataaccaa	2360861	T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 30; E-Value: 0.00000008

Query Start/End: Original strand, 170 - 219

Target Start/End: Original strand, 18435849 - 18435898

Alignment:

Q	170	gatttatatataatcaatcatatcaagtatttacattagattcataacca	219	Q
		\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|
T	18435849	gatttatttatatccaatcagatcaagtatttacattagatccataacca	18435898	T

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