View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1698_low_41 (Length: 227)
Name: NF1698_low_41
Description: NF1698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1698_low_41 |
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| [»] chr4 (7 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 38061372 - 38061152
Alignment:
| Q |
7 |
gtttcgtgaagatggtgccaaagattcaatggtgtannnnnnnccttatggtggcataatgaataatatttcagagtctaaaattccatttccacataga |
106 |
Q |
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||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38061372 |
gtttcatgaagatggtgccaaagattcaatggtgtatttttttccttatggtggcataatgaataatatttcagagtctaaaattccatttccacataga |
38061273 |
T |
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| Q |
107 |
tatggaaatttataccaaattctgtactcggttcattggcatcaagaaagtgatgaggtggaaaaaattaaaatgaattggattagaaaactgtatagtt |
206 |
Q |
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| T |
38061272 |
tatggaaatttataccaaattttgtactcggttcattggcatcaagaaagtgatgaggtggaaaaaattaaaatgaattggattagaaaactgtatagtt |
38061173 |
T |
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| Q |
207 |
ttatggaaccttttgtttcaa |
227 |
Q |
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||||||||||||||||||||| |
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| T |
38061172 |
ttatggaaccttttgtttcaa |
38061152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 38059082 - 38059302
Alignment:
| Q |
7 |
gtttcgtgaagatggtgccaaagattcaatggtgtannnnnnnccttatggtggcataatgaataatatttcagagtctaaaattccatttccacataga |
106 |
Q |
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||||| ||||||||||||||||||| | |||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||| |
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| T |
38059082 |
gtttcatgaagatggtgccaaagatgccatggtgatatgttttccttatggtggcataatggataatatttcagagtctgaaattccatttccacacaga |
38059181 |
T |
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| Q |
107 |
tatggaaatttataccaaattctgtactcggttcattggcatcaagaaagtgatgaggtggaaaaaattaaaatgaattggattagaaaactgtatagtt |
206 |
Q |
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| T |
38059182 |
catggaaatttatatcaaatttattactcagttcattggcatcaagaaagtgatgaggtagaaaaaatgaaaatgaattggattggaaaattgtacagtt |
38059281 |
T |
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| Q |
207 |
ttatggaaccttttgtttcaa |
227 |
Q |
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| T |
38059282 |
atatggaaccttttgtttcaa |
38059302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 50 - 227
Target Start/End: Original strand, 38073459 - 38073636
Alignment:
| Q |
50 |
ccttatggtggcataatgaataatatttcagagtctaaaattccatttccacatagatatggaaatttataccaaattctgtactcggttcattggcatc |
149 |
Q |
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|||||||||||||||||| |||| |||||||| ||| ||||||||||||||||||||||||||| |||||| |||||| || | || || ||||||| |
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| T |
38073459 |
ccttatggtggcataatggataagatttcagaatctgaaattccatttccacatagatatggaaccttatacaaaattcaatatgcagtgcactggcatc |
38073558 |
T |
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| Q |
150 |
aagaaagtgatgaggtggaaaaaattaaaatgaattggattagaaaactgtatagttttatggaaccttttgtttcaa |
227 |
Q |
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| T |
38073559 |
aagaaggtgatgaggtggaaaagttgcacatcaattggattagaaaactttatagttatatggaaccttttgtttcaa |
38073636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 53 - 223
Target Start/End: Original strand, 38086972 - 38087142
Alignment:
| Q |
53 |
tatggtggcataatgaataatatttcagagtctaaaattccatttccacatagatatggaaatttataccaaattctgtactcggttcattggcatcaag |
152 |
Q |
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|||||||||| |||| ||| ||||||||||||| ||||||||||||| |||||| |||||| |||| | |||| |||||||||||||||||||||| |
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| T |
38086972 |
tatggtggcaaaatggatactatttcagagtctgaaattccatttcctcatagaagtggaaacttattcatgattcaatactcggttcattggcatcaag |
38087071 |
T |
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| Q |
153 |
aaagtgatgaggtggaaaaaattaaaatgaattggattagaaaactgtatagttttatggaaccttttgtt |
223 |
Q |
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| T |
38087072 |
aaggtgatgaggtggaaacactgcacattaattggattagaaaactgtatagttatatggaaccttttgtt |
38087142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 50 - 227
Target Start/End: Original strand, 38082541 - 38082718
Alignment:
| Q |
50 |
ccttatggtggcataatgaataatatttcagagtctaaaattccatttccacatagatatggaaatttataccaaattctgtactcggttcattggcatc |
149 |
Q |
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||||||||||| |||||| ||| ||||||||||||| |||||||||||||||||||| | ||||||||||| || |||| ||| |||| ||||||| | |
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| T |
38082541 |
ccttatggtggaataatggatactatttcagagtctgaaattccatttccacatagaaaaggaaatttatatcatattcattaccaggttgattggcaac |
38082640 |
T |
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| Q |
150 |
aagaaagtgatgaggtggaaaaaattaaaatgaattggattagaaaactgtatagttttatggaaccttttgtttcaa |
227 |
Q |
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| ||| ||||||||||||||||| | | || ||||||||||||||||| |||| || ||||||||||||||||||| |
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| T |
38082641 |
aggaaggtgatgaggtggaaaaactgcacattaattggattagaaaactttataattacatggaaccttttgtttcaa |
38082718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 50 - 112
Target Start/End: Original strand, 38078149 - 38078211
Alignment:
| Q |
50 |
ccttatggtggcataatgaataatatttcagagtctaaaattccatttccacatagatatgga |
112 |
Q |
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| T |
38078149 |
ccttatggtggcataatggataatatttcagaatttgaaattccatttccacatagatatgga |
38078211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 227
Target Start/End: Original strand, 37954796 - 37954973
Alignment:
| Q |
50 |
ccttatggtggcataatgaataatatttcagagtctaaaattccatttccacatagatatggaaatttataccaaattctgtactcggttcattggcatc |
149 |
Q |
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||||||||||| |||||| | | ||||| |||||| |||||||||| ||||| ||| |||||| | |||||||||| | ||| ||| |||| | |
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| T |
37954796 |
ccttatggtggaataatggacgagatttcggagtctgaaattccattcccacacagagctggaaacatttaccaaattcagcacttagttttttggaaag |
37954895 |
T |
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| Q |
150 |
aagaaagtgatgaggtggaaaaaattaaaatgaattggattagaaaactgtatagttttatggaaccttttgtttcaa |
227 |
Q |
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| ||| ||||| |||| ||||||| | || ||||||||||||||||| |||| || |||||||||||||||||||| |
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| T |
37954896 |
aggaaggtgataaggtagaaaaaaggcacataaattggattagaaaactttatatttatatggaaccttttgtttcaa |
37954973 |
T |
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