View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1698_low_42 (Length: 226)

Name: NF1698_low_42
Description: NF1698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1698_low_42
NF1698_low_42
[»] chr2 (28 HSPs)
chr2 (1-216)||(6177679-6177894)
chr2 (2-118)||(41643874-41643990)
chr2 (10-116)||(18947536-18947642)
chr2 (2-121)||(19073356-19073476)
chr2 (1-94)||(18779330-18779423)
chr2 (1-122)||(34441852-34441971)
chr2 (9-54)||(18059299-18059344)
chr2 (9-105)||(27138958-27139053)
chr2 (33-121)||(39788538-39788626)
chr2 (72-120)||(41465509-41465557)
chr2 (72-126)||(19313846-19313900)
chr2 (1-54)||(15650914-15650967)
chr2 (72-124)||(31570889-31570941)
chr2 (72-120)||(31861895-31861943)
chr2 (72-120)||(33551141-33551189)
chr2 (2-49)||(58097-58144)
chr2 (72-119)||(13711465-13711512)
chr2 (71-122)||(19093411-19093462)
chr2 (2-49)||(30844918-30844965)
chr2 (72-122)||(2325525-2325575)
chr2 (72-122)||(4166920-4166970)
chr2 (72-122)||(18494423-18494473)
chr2 (72-118)||(36641988-36642034)
chr2 (72-121)||(17054251-17054300)
chr2 (72-121)||(17071892-17071941)
chr2 (72-121)||(19424783-19424832)
chr2 (73-121)||(43446463-43446511)
chr2 (9-57)||(45414333-45414381)
[»] scaffold0200 (1 HSPs)
scaffold0200 (1-121)||(24746-24866)
[»] chr7 (20 HSPs)
chr7 (2-120)||(23402301-23402419)
chr7 (1-105)||(22955241-22955345)
chr7 (1-104)||(37854223-37854326)
chr7 (9-120)||(8133496-8133609)
chr7 (1-120)||(4902340-4902459)
chr7 (71-122)||(40381938-40381989)
chr7 (2-118)||(4618685-4618801)
chr7 (10-94)||(7742945-7743029)
chr7 (9-99)||(5781539-5781627)
chr7 (2-57)||(19786347-19786402)
chr7 (72-122)||(18797302-18797352)
chr7 (72-122)||(26524465-26524515)
chr7 (72-120)||(5657619-5657667)
chr7 (72-118)||(3953733-3953779)
chr7 (72-121)||(21991610-21991659)
chr7 (72-120)||(4582894-4582942)
chr7 (72-120)||(7334769-7334817)
chr7 (72-120)||(8861260-8861308)
chr7 (72-120)||(12165727-12165775)
chr7 (75-119)||(48928704-48928748)
[»] chr3 (27 HSPs)
chr3 (1-122)||(40640563-40640684)
chr3 (2-121)||(45879428-45879547)
chr3 (20-119)||(32180695-32180794)
chr3 (10-119)||(19606852-19606961)
chr3 (1-105)||(7568648-7568752)
chr3 (1-122)||(38392557-38392678)
chr3 (1-120)||(49359557-49359676)
chr3 (2-129)||(53811906-53812033)
chr3 (1-118)||(44880794-44880910)
chr3 (1-121)||(18272153-18272272)
chr3 (9-120)||(47930604-47930714)
chr3 (1-117)||(4556543-4556664)
chr3 (72-122)||(21193595-21193645)
chr3 (72-122)||(35844315-35844365)
chr3 (72-121)||(52041060-52041109)
chr3 (72-120)||(4015451-4015499)
chr3 (9-57)||(42204409-42204457)
chr3 (72-120)||(51213118-51213166)
chr3 (71-130)||(7327619-7327678)
chr3 (75-122)||(22450957-22451004)
chr3 (72-123)||(48354929-48354980)
chr3 (72-118)||(46297899-46297945)
chr3 (72-105)||(11357502-11357535)
chr3 (72-121)||(11466814-11466863)
chr3 (72-121)||(40552396-40552445)
chr3 (72-129)||(55343421-55343478)
chr3 (3-55)||(5124737-5124789)
[»] chr5 (29 HSPs)
chr5 (2-119)||(10237415-10237532)
chr5 (1-130)||(36055803-36055932)
chr5 (1-122)||(22616492-22616612)
chr5 (2-83)||(31878420-31878501)
chr5 (9-96)||(41417516-41417603)
chr5 (9-119)||(21320752-21320862)
chr5 (1-54)||(25653650-25653703)
chr5 (72-122)||(8742014-8742064)
chr5 (72-122)||(19119857-19119907)
chr5 (1-54)||(26411363-26411416)
chr5 (70-122)||(12910348-12910400)
chr5 (72-120)||(15724490-15724538)
chr5 (1-52)||(10053291-10053342)
chr5 (9-40)||(27579108-27579139)
chr5 (76-118)||(5837557-5837599)
chr5 (72-122)||(8466743-8466793)
chr5 (72-122)||(13956472-13956522)
chr5 (70-120)||(22019632-22019682)
chr5 (72-122)||(22974209-22974259)
chr5 (72-118)||(25501053-25501099)
chr5 (72-118)||(26268076-26268122)
chr5 (72-118)||(27318614-27318660)
chr5 (72-122)||(27330304-27330354)
chr5 (75-120)||(14409456-14409501)
chr5 (72-105)||(22980808-22980841)
chr5 (2-55)||(33752978-33753031)
chr5 (72-121)||(39572818-39572867)
chr5 (72-120)||(7693230-7693278)
chr5 (2-58)||(33848617-33848673)
[»] chr6 (10 HSPs)
chr6 (1-123)||(19631746-19631868)
chr6 (72-121)||(8513232-8513281)
chr6 (72-122)||(4318959-4319009)
chr6 (72-130)||(5627381-5627439)
chr6 (72-118)||(30353494-30353540)
chr6 (2-44)||(34993907-34993949)
chr6 (72-121)||(3880075-3880124)
chr6 (75-119)||(20768087-20768131)
chr6 (72-118)||(6088910-6088956)
chr6 (75-120)||(7235173-7235218)
[»] chr1 (26 HSPs)
chr1 (3-104)||(16127536-16127637)
chr1 (1-81)||(10758229-10758309)
chr1 (1-121)||(13876848-13876968)
chr1 (1-121)||(16132474-16132594)
chr1 (72-124)||(16415637-16415689)
chr1 (72-122)||(1547281-1547331)
chr1 (2-57)||(15964163-15964218)
chr1 (75-125)||(14758032-14758082)
chr1 (9-99)||(25943219-25943309)
chr1 (72-122)||(39393377-39393427)
chr1 (1-54)||(28012132-28012185)
chr1 (75-120)||(31621688-31621733)
chr1 (71-120)||(43579242-43579291)
chr1 (72-120)||(38823210-38823258)
chr1 (75-122)||(4150490-4150537)
chr1 (70-121)||(10182138-10182189)
chr1 (72-122)||(11742482-11742532)
chr1 (72-118)||(15752027-15752073)
chr1 (1-51)||(31805013-31805063)
chr1 (72-122)||(37619028-37619078)
chr1 (72-121)||(2959743-2959792)
chr1 (72-105)||(21289676-21289709)
chr1 (72-120)||(3309144-3309192)
chr1 (75-127)||(15168078-15168130)
chr1 (72-120)||(27227609-27227657)
chr1 (72-104)||(27533112-27533144)
[»] chr4 (31 HSPs)
chr4 (1-122)||(2704510-2704629)
chr4 (9-118)||(20097424-20097537)
chr4 (2-118)||(2266786-2266902)
chr4 (2-122)||(54995729-54995849)
chr4 (1-54)||(1012362-1012415)
chr4 (1-117)||(17612338-17612453)
chr4 (1-119)||(51204580-51204702)
chr4 (72-122)||(38812260-38812310)
chr4 (3-55)||(9743653-9743705)
chr4 (72-118)||(27396618-27396664)
chr4 (72-122)||(35021198-35021248)
chr4 (75-120)||(28003152-28003197)
chr4 (72-120)||(49375966-49376015)
chr4 (72-120)||(38811813-38811861)
chr4 (72-120)||(55241267-55241315)
chr4 (9-52)||(17513083-17513126)
chr4 (72-123)||(32912743-32912794)
chr4 (72-123)||(34361654-34361705)
chr4 (75-122)||(38011852-38011899)
chr4 (10-40)||(2570558-2570588)
chr4 (72-122)||(17272009-17272059)
chr4 (72-122)||(29584361-29584411)
chr4 (72-118)||(47253751-47253797)
chr4 (1-47)||(51959922-51959968)
chr4 (72-122)||(55478058-55478108)
chr4 (1-54)||(22729777-22729830)
chr4 (1-54)||(22756860-22756913)
chr4 (72-121)||(25184112-25184161)
chr4 (72-120)||(7703517-7703565)
chr4 (72-120)||(28293237-28293285)
chr4 (72-120)||(39397918-39397966)
[»] scaffold0050 (1 HSPs)
scaffold0050 (1-57)||(5653-5709)
[»] chr8 (18 HSPs)
chr8 (11-121)||(7290719-7290828)
chr8 (72-122)||(1204924-1204974)
chr8 (1-122)||(4108843-4108962)
chr8 (72-120)||(10555345-10555393)
chr8 (72-123)||(16222859-16222910)
chr8 (72-130)||(34894956-34895014)
chr8 (9-57)||(3038469-3038517)
chr8 (72-120)||(13307622-13307670)
chr8 (72-120)||(23854574-23854622)
chr8 (72-122)||(43643738-43643788)
chr8 (72-121)||(1150248-1150297)
chr8 (80-121)||(7998361-7998402)
chr8 (72-121)||(27082981-27083030)
chr8 (75-120)||(33906223-33906268)
chr8 (82-127)||(39099262-39099307)
chr8 (72-120)||(15009241-15009289)
chr8 (1-57)||(35735909-35735965)
chr8 (72-120)||(41362517-41362565)
[»] scaffold0262 (1 HSPs)
scaffold0262 (72-120)||(12138-12186)
[»] scaffold0009 (1 HSPs)
scaffold0009 (72-122)||(100819-100869)
[»] scaffold0002 (1 HSPs)
scaffold0002 (72-121)||(133-182)


Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 6177894 - 6177679
Alignment:
Q  1 gcaaatgcgcaatacaccatataatctgacgtgacatgaattaaatacacaaatgctatttgattgaccttttaacttcaccagaaaagtcattctcatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||| |||||||||||||||||||||||||||||     
T  6177894 gcaaatgcgcaatacaccatataatctgacgtgacatgaattaaatacacaaatgctcaatgattgaccatttaacttcaccagaaaagtcattctcatg 6177795  T
Q  101 acttcgccgtagaattttccttgaaaaaatccctcaaatggaagggaacacattttcatggtcaacaatagtggatgaagtaattagtggcatgataata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6177794 acttcgccgtagaattttccttgaaaaaatccctcaaatggaagggaacacattttcatggtcaacaatagtggatgaagtaattagtggcatgataata 6177695  T
Q  201 gggttatgatgttcat 216  Q
    ||||||||||||||||    
T  6177694 gggttatgatgttcat 6177679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 2 - 118
Target Start/End: Complemental strand, 41643990 - 41643874
Alignment:
Q  2 caaatgcgcaatacaccatataatctgacgtgacatgaattaaatacacaaatgctatttgattgaccttttaacttcaccagaaaagtcattctcatca 101  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||| ||||||||||||| |||||||||| |||| |    
T  41643990 caaatgtgcaatacaccatataatctgacgtgacatgaattaaatacacaaatgctcaatgattgaccatttaacttcaccaaaaaagtcattatcatga 41643891  T
Q  102 cttcgccgtagaatttt 118  Q
    |||| || |||||||||    
T  41643890 cttcaccatagaatttt 41643874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 116
Target Start/End: Original strand, 18947536 - 18947642
Alignment:
Q  10 caatacaccatataatctgacgtgacatgaattaaatacacaaatgctatttgattgaccttttaacttcaccagaaaagtcattctcatcacttcgccg 109  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| |   ||||||||| |||||||||||||||||||| ||| |||| ||||| ||     
T  18947536 caatacaccatataatctgacgtgacatggattaaatacacaaatgttcaatgattgaccatttaacttcaccagaaaagttattttcatgacttcacca 18947635  T
Q  110 tagaatt 116  Q
    |||||||    
T  18947636 tagaatt 18947642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 2 - 121
Target Start/End: Complemental strand, 19073476 - 19073356
Alignment:
Q  2 caaatgcgcaatacaccatataatctgacgtgacatgaattaaatacacaaatgctatttgattgaccttttaacttcacc-agaaaagtcattctcatc 100  Q
    |||||| | |||||||||||||||||||||||||||| ||||||||||||||| ||   ||||||||| |||||||||||| | |||| ||||||||||     
T  19073476 caaatgtggaatacaccatataatctgacgtgacatggattaaatacacaaattctcaatgattgaccatttaacttcaccaaaaaaaatcattctcata 19073377  T
Q  101 acttcgccgtagaattttcct 121  Q
    ||||| || ||||||||||||    
T  19073376 acttcaccatagaattttcct 19073356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 18779330 - 18779423
Alignment:
Q  1 gcaaatgcgcaatacaccatataatctgacgtgacatgaattaaatacacaaatgctatttgattgaccttttaacttcaccagaaaagtcatt 94  Q
    ||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||   ||||||||| |||||||||| ||  |||||||||    
T  18779330 gcaaatgtgcaataaaccatataatctgatgtgacatgaattaaatacacaaatgctcaatgattgaccatttaacttcatcaataaagtcatt 18779423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 34441852 - 34441971
Alignment:
Q  1 gcaaatgcgcaatacaccatataatctgacgtgacatgaattaaatacacaaatgctatttgattgaccttttaacttcaccagaaaagtcattctcatc 100  Q
    ||||||| |||||||||||||||||  |||||||||||||||||||||||||||  |   | ||||  | |||||||| |||| |||||||||| ||||     
T  34441852 gcaaatgtgcaatacaccatataat--gacgtgacatgaattaaatacacaaatattcaataattggtcatttaactttaccaaaaaagtcattttcatg 34441949  T
Q  101 acttcgccgtagaattttcctt 122  Q
    ||||| || |||||||||||||    
T  34441950 acttcaccatagaattttcctt 34441971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 18059299 - 18059344
Alignment:
Q  9 gcaatacaccatataatctgacgtgacatgaattaaatacacaaat 54  Q
    |||||||||||||||||||||| |||||||||||||||||||||||    
T  18059299 gcaatacaccatataatctgacatgacatgaattaaatacacaaat 18059344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 105
Target Start/End: Original strand, 27138958 - 27139053
Alignment:
Q  9 gcaatacaccatataatctgacgtgacatgaattaaatacacaaatgctatttgattgaccttttaacttcaccagaaaagtcattctcatcacttc 105  Q
    |||||||||| ||||||||||||||||||| ||| |||||||||||| |   |||||| || |||||||||| || |||||||||| |||| |||||    
T  27138958 gcaatacaccgtataatctgacgtgacatggatt-aatacacaaatgatcaatgattggccatttaacttcatcaaaaaagtcattttcatgacttc 27139053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 121
Target Start/End: Original strand, 39788538 - 39788626
Alignment:
Q  33 gacatgaattaaatacacaaatgctatttgattgaccttttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcct 121  Q
    |||||| ||||||||||||||||||   ||||||||  ||| ||||||| |||||||||||||| || ||||| || || |||||||||    
T  39788538 gacatggattaaatacacaaatgctcaatgattgactatttgacttcactagaaaagtcattcttatgacttcaccataaaattttcct 39788626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 41465557 - 41465509
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcc 120  Q
    |||||||||||||||||||||||||||| ||||| || |||||||||||    
T  41465557 ttaacttcaccagaaaagtcattctcatgacttcaccatagaattttcc 41465509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 126
Target Start/End: Complemental strand, 19313900 - 19313846
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttccttgaaa 126  Q
    ||||||||||||||||||||||||| || ||||| || ||||||||||| |||||    
T  19313900 ttaacttcaccagaaaagtcattctaatgacttcaccatagaattttccatgaaa 19313846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 15650967 - 15650914
Alignment:
Q  1 gcaaatgcgcaatacaccatataatctgacgtgacatgaattaaatacacaaat 54  Q
    ||||||| | ||||||||||||||||| |||||| ||| |||||||||||||||    
T  15650967 gcaaatgtgaaatacaccatataatcttacgtgatatggattaaatacacaaat 15650914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 124
Target Start/End: Original strand, 31570889 - 31570941
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttccttga 124  Q
    |||| |||||||||||||| |||||||| ||||| || |||||||||||||||    
T  31570889 ttaatttcaccagaaaagttattctcataacttcaccatagaattttccttga 31570941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 31861943 - 31861895
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcc 120  Q
    |||||||||||| ||||||||||||||| ||||| || |||||||||||    
T  31861943 ttaacttcaccaaaaaagtcattctcataacttcaccatagaattttcc 31861895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 33551141 - 33551189
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcc 120  Q
    |||||||||| | ||||||||||||||| ||||| ||||||||||||||    
T  33551141 ttaacttcactaaaaaagtcattctcatgacttcaccgtagaattttcc 33551189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 58144 - 58097
Alignment:
Q  2 caaatgcgcaatacaccatataatctgacgtgacatgaattaaataca 49  Q
    |||||| ||||||||||||||||| |||  ||||||||||||||||||    
T  58144 caaatgtgcaatacaccatataatttgatctgacatgaattaaataca 58097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 119
Target Start/End: Complemental strand, 13711512 - 13711465
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttc 119  Q
    ||||||||||||||||||||||||| || ||||| || ||||||||||    
T  13711512 ttaacttcaccagaaaagtcattctgatgacttcaccatagaattttc 13711465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 122
Target Start/End: Complemental strand, 19093462 - 19093411
Alignment:
Q  71 tttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcctt 122  Q
    |||||||||||||||||| |||||||||| ||||| || || ||||||||||    
T  19093462 tttaacttcaccagaaaaatcattctcatgacttcaccataaaattttcctt 19093411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 30844965 - 30844918
Alignment:
Q  2 caaatgcgcaatacaccatataatctgacgtgacatgaattaaataca 49  Q
    |||||| |||||| | ||||||||||||||||||||| ||||||||||    
T  30844965 caaatgtgcaatatatcatataatctgacgtgacatggattaaataca 30844918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 2325525 - 2325575
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcctt 122  Q
    |||||||||| ||||||||||||| ||| ||||| || |||||||||||||    
T  2325525 ttaacttcacgagaaaagtcattcacataacttcaccatagaattttcctt 2325575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 4166970 - 4166920
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcctt 122  Q
    ||||||||||||||||||||||| || | ||||| || |||||||||||||    
T  4166970 ttaacttcaccagaaaagtcattttcgtgacttcaccatagaattttcctt 4166920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 18494423 - 18494473
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcctt 122  Q
    ||||||||||||||||||||||| |||| ||||| ||  ||||||||||||    
T  18494423 ttaacttcaccagaaaagtcattttcatgacttcaccacagaattttcctt 18494473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 118
Target Start/End: Complemental strand, 36642034 - 36641988
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaatttt 118  Q
    |||| ||||||||||||||||||||||| ||||| || |||||||||    
T  36642034 ttaatttcaccagaaaagtcattctcatgacttcaccatagaatttt 36641988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 121
Target Start/End: Original strand, 17054251 - 17054300
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcct 121  Q
    |||||||||||| ||||||||||| ||| ||||| || ||||||||||||    
T  17054251 ttaacttcaccaaaaaagtcattcgcatgacttcaccatagaattttcct 17054300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 121
Target Start/End: Original strand, 17071892 - 17071941
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcct 121  Q
    |||||||||||| ||||||||||| ||| ||||| || ||||||||||||    
T  17071892 ttaacttcaccaaaaaagtcattcgcatgacttcaccatagaattttcct 17071941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 121
Target Start/End: Original strand, 19424783 - 19424832
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcct 121  Q
    |||||||||||||||||| ||||||||| ||||| || || |||||||||    
T  19424783 ttaacttcaccagaaaagccattctcatgacttcaccataaaattttcct 19424832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 121
Target Start/End: Original strand, 43446463 - 43446511
Alignment:
Q  73 taacttcaccagaaaagtcattctcatcacttcgccgtagaattttcct 121  Q
    ||||||||||  ||||||||||||||| ||||| || ||||||||||||    
T  43446463 taacttcaccgaaaaagtcattctcatgacttcaccatagaattttcct 43446511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 45414333 - 45414381
Alignment:
Q  9 gcaatacaccatataatctgacgtgacatgaattaaatacacaaatgct 57  Q
    ||||| ||||||||| |||||||||||||  |||||||| |||||||||    
T  45414333 gcaatgcaccatatattctgacgtgacatagattaaatatacaaatgct 45414381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 24746 - 24866
Alignment:
Q  1 gcaaatgcgcaatacaccatataatctgacgtgacatgaattaaatacacaaatgctatttgattgaccttttaacttcaccagaaaagtcattctcatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||| ||||| |||||||||||| ||||||||||     
T  24746 gcaaatgcgcaatacaccatataatctgacgtgacatgaattaaatacacaaatgctcaatgattgaccatttaatttcaccagaaaaatcattctcata 24845  T
Q  101 acttcgccgtagaattttcct 121  Q
    |||| ||| ||||||||||||    
T  24846 actttgccatagaattttcct 24866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 2 - 120
Target Start/End: Original strand, 23402301 - 23402419
Alignment:
Q  2 caaatgcgcaatacaccatataatctgacgtgacatgaattaaatacacaaatgctatttgattgaccttttaacttcaccagaaaagtcattctcatca 101  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |   ||||||||| ||||||||||||||||||||||||||||| |    
T  23402301 caaatgcgcaatacaccatataatatgacgtgacatgaattaaatacacagatgttcaatgattgaccatttaacttcaccagaaaagtcattctcatga 23402400  T
Q  102 cttcgccgtagaattttcc 120  Q
    ||||||| |||||||||||    
T  23402401 cttcgccatagaattttcc 23402419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 22955241 - 22955345
Alignment:
Q  1 gcaaatgcgcaatacaccatataatctgacgtgacatgaattaaatacacaaatgctatttgattgaccttttaacttcaccagaaaagtcattctcatc 100  Q
    ||||||| ||||||||||||||||| |||||||||||| |||||||||||||||| |   | ||||||| |||||||||||||||||||||||||||||     
T  22955241 gcaaatgtgcaatacaccatataatttgacgtgacatggattaaatacacaaatgttcaataattgaccatttaacttcaccagaaaagtcattctcatt 22955340  T
Q  101 acttc 105  Q
    |||||    
T  22955341 acttc 22955345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 37854223 - 37854326
Alignment:
Q  1 gcaaatgcgcaatacaccatataatctgacgtgacatgaattaaatacacaaatgctatttgattgaccttttaacttcaccagaaaagtcattctcatc 100  Q
    ||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||   | ||||||| ||||| |||||||||||||||||||||||     
T  37854223 gcaaatgtgcaatacaccatataatgtgacgtgacatggattaaatacacaaatgctcaataattgaccatttaatttcaccagaaaagtcattctcatg 37854322  T
Q  101 actt 104  Q
    ||||    
T  37854323 actt 37854326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 9 - 120
Target Start/End: Original strand, 8133496 - 8133609
Alignment:
Q  9 gcaatacaccatataatctgacgtgacatgaattaaatacacaaatgctatttgattgacc--ttttaacttcaccagaaaagtcattctcatcacttcg 106  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||   ||||||| |  |||||||||||||| |||||| ||||| || |||||     
T  8133496 gcaatacaccatataatctgacgtgtcttgaattaaatacacaaatgcttaatgattgatcatttttaacttcaccaaaaaagttattcttatgacttca 8133595  T
Q  107 ccgtagaattttcc 120  Q
    | ||||||||||||    
T  8133596 cagtagaattttcc 8133609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 4902459 - 4902340
Alignment:
Q  1 gcaaatgcgcaatacaccatataatctgacgtgacatgaattaaatacacaaatgctatttgattgaccttttaacttcaccagaaaagtcattctcatc 100  Q
    ||||||| || ||||||||||||||||||||||||||| |||||||||| |||||||   | ||||| | ||||| ||||||| |||| | ||| ||||     
T  4902459 gcaaatgtgctatacaccatataatctgacgtgacatggattaaatacataaatgctcaataattgatcatttaaattcaccaaaaaaattattttcatg 4902360  T
Q  101 acttcgccgtagaattttcc 120  Q
    ||||| || || ||||||||    
T  4902359 acttcaccataaaattttcc 4902340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 71 - 122
Target Start/End: Complemental strand, 40381989 - 40381938
Alignment:
Q  71 tttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcctt 122  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  40381989 tttaacttcaccagaaaagtcattctcataacttcaccgtagaattttcctt 40381938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 118
Target Start/End: Original strand, 4618685 - 4618801
Alignment:
Q  2 caaatgcgcaatacaccatataatctgacgtgacatgaattaaatacacaaatgctatttgattgaccttttaacttcaccagaaaagtcattctcatca 101  Q
    |||||| ||||||||||||||||| ||| | ||||||||||||||||||||||| |   |||||   | |||||||| |||| |||| ||||| |||| |    
T  4618685 caaatgtgcaatacaccatataatttgaagcgacatgaattaaatacacaaatgttcaatgattagtcatttaactttaccaaaaaaatcattttcatga 4618784  T
Q  102 cttcgccgtagaatttt 118  Q
    |||  ||||||||||||    
T  4618785 ctttaccgtagaatttt 4618801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 94
Target Start/End: Complemental strand, 7743029 - 7742945
Alignment:
Q  10 caatacaccatataatctgacgtgacatgaattaaatacacaaatgctatttgattgaccttttaacttcaccagaaaagtcatt 94  Q
    |||||||||||||||||| |||||||||  ||||||||||||||| ||   ||||||| | ||| |||||| || ||||||||||    
T  7743029 caatacaccatataatctaacgtgacatagattaaatacacaaatactcaatgattgatcattttacttcatcaaaaaagtcatt 7742945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 99
Target Start/End: Complemental strand, 5781627 - 5781539
Alignment:
Q  9 gcaatacaccatataatctgacgtgacatgaattaaatacacaaatgctatttgattgaccttttaacttcaccagaaaagtcattctcat 99  Q
    |||||||||||||||||  ||||||||||| |||||||||||||||  |   ||||||| | |||||||| ||||||||| ||||| ||||    
T  5781627 gcaatacaccatataat--gacgtgacatggattaaatacacaaatatttaatgattgatcatttaactttaccagaaaaatcattttcat 5781539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 19786402 - 19786347
Alignment:
Q  2 caaatgcgcaatacaccatataatctgacgtgacatgaattaaatacacaaatgct 57  Q
    |||||| ||||| || |||||||| ||||||| |||||||||||||||||||||||    
T  19786402 caaatgtgcaatgcatcatataatatgacgtggcatgaattaaatacacaaatgct 19786347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 18797352 - 18797302
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcctt 122  Q
    |||||||||||| ||||||||||||||| ||||| || |||||||||||||    
T  18797352 ttaacttcaccaaaaaagtcattctcatgacttcaccatagaattttcctt 18797302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 26524465 - 26524515
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcctt 122  Q
    ||||| |||||||||||||||||||||| ||||| || |||||||||||||    
T  26524465 ttaacatcaccagaaaagtcattctcatgacttcaccatagaattttcctt 26524515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 5657619 - 5657667
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcc 120  Q
    |||||||||| ||||||||||||||||| ||||| || |||||||||||    
T  5657619 ttaacttcactagaaaagtcattctcatgacttcaccatagaattttcc 5657667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 118
Target Start/End: Complemental strand, 3953779 - 3953733
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaatttt 118  Q
    |||||||||||||||||||||||||||| |||||  | |||||||||    
T  3953779 ttaacttcaccagaaaagtcattctcatgacttcatcatagaatttt 3953733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 21991659 - 21991610
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcct 121  Q
    |||||||||||| |||| |||||||||| ||||| || ||||||||||||    
T  21991659 ttaacttcaccataaaaatcattctcatgacttcaccctagaattttcct 21991610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 4582942 - 4582894
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcc 120  Q
    ||||||||||||||||||||||| || | ||||| || |||||||||||    
T  4582942 ttaacttcaccagaaaagtcattttcgtgacttcaccatagaattttcc 4582894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 7334817 - 7334769
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcc 120  Q
    ||||||||| || ||||||||||||||  ||||| ||||||||||||||    
T  7334817 ttaacttcatcaaaaaagtcattctcacgacttcaccgtagaattttcc 7334769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 8861308 - 8861260
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcc 120  Q
    |||||||| | ||||||||||||||||| ||||| || |||||||||||    
T  8861308 ttaacttcgcgagaaaagtcattctcatgacttcaccatagaattttcc 8861260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 12165775 - 12165727
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcc 120  Q
    ||||||||||||||||||||||| | |  ||||| ||||||||||||||    
T  12165775 ttaacttcaccagaaaagtcattttaacgacttcaccgtagaattttcc 12165727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 119
Target Start/End: Original strand, 48928704 - 48928748
Alignment:
Q  75 acttcaccagaaaagtcattctcatcacttcgccgtagaattttc 119  Q
    ||||||||||||||||||||||||| ||||| || || |||||||    
T  48928704 acttcaccagaaaagtcattctcatgacttcaccataaaattttc 48928748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 7e-39; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 40640563 - 40640684
Alignment:
Q  1 gcaaatgcgcaatacaccatataatctgacgtgacatgaattaaatacacaaatgctatttgattgaccttttaacttcaccagaaaagtcattctcatc 100  Q
    ||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||   ||||||||| |||||||||||||||||||||||||||||     
T  40640563 gcaaatgtgcaatacaccatataatatgacgtgacatggattaaatacacaaatgctcaatgattgaccatttaacttcaccagaaaagtcattctcatg 40640662  T
Q  101 acttcgccgtagaattttcctt 122  Q
    ||||| || |||||||||||||    
T  40640663 acttcaccatagaattttcctt 40640684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 2 - 121
Target Start/End: Original strand, 45879428 - 45879547
Alignment:
Q  2 caaatgcgcaatacaccatataatctgacgtgacatgaattaaatacacaaatgctatttgattgaccttttaacttcaccagaaaagtcattctcatca 101  Q
    |||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||   |||||| || |||||||| |||||||||||||||||||| |    
T  45879428 caaatgtgcaatacaccatataatctgacgtggcatggattaaatacacaaatgctcaatgattggccatttaactttaccagaaaagtcattctcatga 45879527  T
Q  102 cttcgccgtagaattttcct 121  Q
    ||||  | ||||||||||||    
T  45879528 cttcagcatagaattttcct 45879547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 119
Target Start/End: Original strand, 32180695 - 32180794
Alignment:
Q  20 tataatctgacgtgacatgaattaaatacacaaatgctatttgattgaccttttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttc 119  Q
    |||||||||||||||||| |||||||||||||||||||   ||||| ||| ||||||||||| ||||||||||||||||| ||||| ||||| |||||||    
T  32180695 tataatctgacgtgacataaattaaatacacaaatgctcaatgattaaccatttaacttcactagaaaagtcattctcataacttcaccgtacaattttc 32180794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 10 - 119
Target Start/End: Original strand, 19606852 - 19606961
Alignment:
Q  10 caatacaccatataatctgacgtgacatgaattaaatacacaaatgctatttgattgaccttttaacttcaccagaaaagtcattctcatcacttcgccg 109  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||   | ||||  | |||||||||||||||||||||||| | || ||||| ||     
T  19606852 caatacaccatataatctgacgtgacctgaattaaatacacaaatgctcaatcattggtcatttaacttcaccagaaaagtcatttttataacttcacca 19606951  T
Q  110 tagaattttc 119  Q
    ||||||||||    
T  19606952 tagaattttc 19606961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 7568648 - 7568752
Alignment:
Q  1 gcaaatgcgcaatacaccatataatctgacgtgacatgaattaaatacacaaatgctatttgattgaccttttaacttcaccagaaaagtcattctcatc 100  Q
    ||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||   ||||| ||| ||||||||||||| |||||| ||| ||||     
T  7568648 gcaaatgtgcaatactgcatataatctgacgtgacatgaattaaatacacaaatgctcaatgatttaccatttaacttcaccaaaaaagtaattttcatg 7568747  T
Q  101 acttc 105  Q
    |||||    
T  7568748 acttc 7568752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 38392557 - 38392678
Alignment:
Q  1 gcaaatgcgcaatacaccatataatctgacgtgacatgaattaaatacacaaatgctatttgattgaccttttaacttcaccagaaaagtcattctcatc 100  Q
    ||||||| |||||||| ||||||||||| | ||||||| |||||||||||||||| |   ||| ||||| ||||||||||||| |||||||||||||||     
T  38392557 gcaaatgtgcaatacatcatataatctgtcatgacatggattaaatacacaaatgttcaatgactgaccatttaacttcaccaaaaaagtcattctcatg 38392656  T
Q  101 acttcgccgtagaattttcctt 122  Q
    ||||| || || ||||| ||||    
T  38392657 acttcaccatataatttccctt 38392678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 49359557 - 49359676
Alignment:
Q  1 gcaaatgcgcaatacaccatataatctgacgtgacatgaattaaatacacaaatgctatttgattgaccttttaacttcaccagaaaagtcattctcatc 100  Q
    ||||||| |||||||| |||||||| ||||||| |||| |||||||||||||||| |   |||||| || ||||||||||| | |||||||||| ||||     
T  49359557 gcaaatgtgcaatacatcatataatatgacgtgtcatggattaaatacacaaatgttcaatgattggccatttaacttcacaaaaaaagtcattttcatg 49359656  T
Q  101 acttcgccgtagaattttcc 120  Q
    ||||| || |||||||||||    
T  49359657 acttcaccatagaattttcc 49359676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 2 - 129
Target Start/End: Original strand, 53811906 - 53812033
Alignment:
Q  2 caaatgcgcaatacaccatataatctgacgtgacatgaattaaatacacaaatgctatttgattgacctt----ttaacttcaccagaaaagtcattctc 97  Q
    |||||| | |||||||||||||||||||||||||||| |||||||||| |||||    || | ||||| |    ||||||||| ||||||||||||||||    
T  53811906 caaatgtggaatacaccatataatctgacgtgacatggattaaatacataaatg----ttcactgaccatagcattaacttcatcagaaaagtcattctc 53812001  T
Q  98 atcacttcgccgtagaattttccttgaaaaaa 129  Q
    || ||||| |||||||||||||| | ||||||    
T  53812002 atgacttcaccgtagaattttccataaaaaaa 53812033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 44880910 - 44880794
Alignment:
Q  1 gcaaatgcgcaatacaccatataatctgacgtgacatgaattaaatacacaaatgctatttgattgaccttttaacttcaccagaaaagtcattctcatc 100  Q
    ||||||| |||||||||||||| ||||||||||||||| |||||||||| ||||| |   ||||||||| ||||||||||  | |||||||||| ||||     
T  44880910 gcaaatgtgcaatacaccatattatctgacgtgacatggattaaatacataaatgttcaatgattgaccatttaacttcatta-aaaagtcattttcata 44880812  T
Q  101 acttcgccgtagaatttt 118  Q
    | ||| ||||| ||||||    
T  44880811 atttcaccgtaaaatttt 44880794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 18272153 - 18272272
Alignment:
Q  1 gcaaatgcgcaatacaccatataatctgacgtgacatgaattaaatacacaaatgctatttgattgaccttttaacttcaccagaaaagtcattctcatc 100  Q
    ||||||| |||||||||||||||||||||| ||| |||||||||||||||||||| |   ||||||     ||||| |||  |||||||||||||||||     
T  18272153 gcaaatgtgcaatacaccatataatctgacttgatatgaattaaatacacaaatgttcaatgattg-ggagttaacgtcattagaaaagtcattctcatg 18272251  T
Q  101 acttcgccgtagaattttcct 121  Q
    ||||| ||||| |||||||||    
T  18272252 acttcaccgtataattttcct 18272272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 9 - 120
Target Start/End: Original strand, 47930604 - 47930714
Alignment:
Q  9 gcaatacaccatataatctgacgtgacatgaattaaatacacaaatgctatttgattgaccttttaacttcaccagaaaagtcattctcatcacttcgcc 108  Q
    |||||||||||||||||| ||  | ||||| |||||||||||||||| |   ||||||  | |||||||||||||||||| ||||| |||| ||||| ||    
T  47930604 gcaatacaccatataatc-gatataacatggattaaatacacaaatgttcaatgattggtcatttaacttcaccagaaaaatcattttcatgacttcacc 47930702  T
Q  109 gtagaattttcc 120  Q
     |||||||||||    
T  47930703 atagaattttcc 47930714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 4556664 - 4556543
Alignment:
Q  1 gcaaatgcgcaatacaccatataatctgacgtgacatgaa----ttaaatacacaaatgctatttgatt-gaccttttaacttcaccagaaaagtcattc 95  Q
    ||||||| ||||||| ||||||||||||||||||||||||    |||||||||||||| ||   ||||| | | |  ||||||||| ||||||||||||     
T  4556664 gcaaatgtgcaatacgccatataatctgacgtgacatgaattaattaaatacacaaatactcaatgattggtcatagtaacttcacgagaaaagtcattt 4556565  T
Q  96 tcatcacttcgccgtagaattt 117  Q
    |||| ||||| || ||||||||    
T  4556564 tcatgacttcaccatagaattt 4556543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 21193645 - 21193595
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcctt 122  Q
    |||||||||||||||||||||||||||| ||||  || |||||||||||||    
T  21193645 ttaacttcaccagaaaagtcattctcatgactttaccatagaattttcctt 21193595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 35844365 - 35844315
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcctt 122  Q
    ||||||||||||||||||||||| |||| ||||| || |||||||||||||    
T  35844365 ttaacttcaccagaaaagtcattatcatgacttcaccatagaattttcctt 35844315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 121
Target Start/End: Original strand, 52041060 - 52041109
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcct 121  Q
    |||||||||||||||||||||||||||| ||||| ||  |||||||||||    
T  52041060 ttaacttcaccagaaaagtcattctcatgacttcacctcagaattttcct 52041109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 4015499 - 4015451
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcc 120  Q
    ||||||||| |||||||||||||||||| ||||| || |||||||||||    
T  4015499 ttaacttcatcagaaaagtcattctcatgacttcaccatagaattttcc 4015451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 42204457 - 42204409
Alignment:
Q  9 gcaatacaccatataatctgacgtgacatgaattaaatacacaaatgct 57  Q
    |||||||||||||||||| || |||||||  ||||||||||||||||||    
T  42204457 gcaatacaccatataatccgatgtgacatagattaaatacacaaatgct 42204409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 51213118 - 51213166
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcc 120  Q
    |||||||||||| ||||||||||||||| ||||| || |||||||||||    
T  51213118 ttaacttcaccaaaaaagtcattctcatgacttcaccatagaattttcc 51213166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 130
Target Start/End: Original strand, 7327619 - 7327678
Alignment:
Q  71 tttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttccttgaaaaaat 130  Q
    ||||||||||| | ||||||||||||||| ||||| || ||||||||||||  |||||||    
T  7327619 tttaacttcactaaaaaagtcattctcataacttcaccatagaattttcctaaaaaaaat 7327678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 122
Target Start/End: Complemental strand, 22451004 - 22450957
Alignment:
Q  75 acttcaccagaaaagtcattctcatcacttcgccgtagaattttcctt 122  Q
    |||||||||||||| |||||||||| ||||| || |||||||||||||    
T  22451004 acttcaccagaaaaatcattctcatgacttcaccatagaattttcctt 22450957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 123
Target Start/End: Complemental strand, 48354980 - 48354929
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttccttg 123  Q
    |||||||||||| |||| |||||||||| ||||| || ||||||||||||||    
T  48354980 ttaacttcaccataaaaatcattctcatgacttcaccatagaattttccttg 48354929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 118
Target Start/End: Original strand, 46297899 - 46297945
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaatttt 118  Q
    ||||||||||||||||||||||| |||| ||||| || |||||||||    
T  46297899 ttaacttcaccagaaaagtcattttcatgacttcaccatagaatttt 46297945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 105
Target Start/End: Original strand, 11357502 - 11357535
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttc 105  Q
    |||||||||||||||||||||||||||| |||||    
T  11357502 ttaacttcaccagaaaagtcattctcatgacttc 11357535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 11466863 - 11466814
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcct 121  Q
    ||||||||| |||||||||||||||||  ||||| || ||||||||||||    
T  11466863 ttaacttcatcagaaaagtcattctcaagacttcaccatagaattttcct 11466814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 121
Target Start/End: Original strand, 40552396 - 40552445
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcct 121  Q
    |||||||| ||| ||||||||||||||| ||||| || ||||||||||||    
T  40552396 ttaacttctccaaaaaagtcattctcatgacttcaccatagaattttcct 40552445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 129
Target Start/End: Original strand, 55343421 - 55343478
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttccttgaaaaaa 129  Q
    ||||||||| ||||||||||||| || | ||||| || ||||||||||||| ||||||    
T  55343421 ttaacttcatcagaaaagtcattttcgtgacttcaccatagaattttcctttaaaaaa 55343478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 5124789 - 5124737
Alignment:
Q  3 aaatgcgcaatacaccatataatctgacgtgacatgaattaaatacacaaatg 55  Q
    ||||| |||||||||| |||||| |||| ||||||  ||||||||||||||||    
T  5124789 aaatgtgcaatacaccgtataatttgacatgacatacattaaatacacaaatg 5124737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 4e-34; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 2 - 119
Target Start/End: Complemental strand, 10237532 - 10237415
Alignment:
Q  2 caaatgcgcaatacaccatataatctgacgtgacatgaattaaatacacaaatgctatttgattgaccttttaacttcaccagaaaagtcattctcatca 101  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||   ||||||||| ||||||||||| |||||||||||| |||| |    
T  10237532 caaatgcgcaatacaccatataatctgacgtgaaatgaattaaatacacaaatgctcaatgattgaccatttaacttcactagaaaagtcattttcatga 10237433  T
Q  102 cttcgccgtagaattttc 119  Q
    |||| |  ||||||||||    
T  10237432 cttcacaatagaattttc 10237415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 36055803 - 36055932
Alignment:
Q  1 gcaaatgcgcaatacaccatataatctgacgtgacatgaattaaatacacaaatgctatttgattgaccttttaacttcaccagaaaagtcattctcatc 100  Q
    ||||||| |||||||||||| |||||||| | |||||||||||||| ||||||||||   ||||||||| ||||||||||| |||||||||||||||||     
T  36055803 gcaaatgtgcaatacaccatgtaatctgatgcgacatgaattaaattcacaaatgctcaatgattgaccatttaacttcacaagaaaagtcattctcatg 36055902  T
Q  101 acttcgccgtagaattttccttgaaaaaat 130  Q
    || || || || |||||||||  |||||||    
T  36055903 acatcaccataaaattttcctataaaaaat 36055932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 22616612 - 22616492
Alignment:
Q  1 gcaaatgcgcaatacaccatataatctgacgtgacatgaattaaatacacaaatgctatttgattgaccttttaacttcaccagaaaagtcattctcatc 100  Q
    |||||||  |||||||||||||||| |||||||||||| |||||||||| || ||||   |||||| || |||||||||||||||||||||||| ||||     
T  22616612 gcaaatgtccaatacaccatataatatgacgtgacatggattaaatacataa-tgctcaatgattggccatttaacttcaccagaaaagtcattttcatg 22616514  T
Q  101 acttcgccgtagaattttcctt 122  Q
    ||||| || |||||||||||||    
T  22616513 acttcaccatagaattttcctt 22616492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 2 - 83
Target Start/End: Complemental strand, 31878501 - 31878420
Alignment:
Q  2 caaatgcgcaatacaccatataatctgacgtgacatgaattaaatacacaaatgctatttgattgaccttttaacttcacca 83  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||  |||||||||||||    
T  31878501 caaatgtgcaatacaccatataatctgacgtgacatgaattaaatacacaaatgcttaatgattgacaatttaacttcacca 31878420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 9 - 96
Target Start/End: Original strand, 41417516 - 41417603
Alignment:
Q  9 gcaatacaccatataatctgacgtgacatgaattaaatacacaaatgctatttgattgaccttttaacttcaccagaaaagtcattct 96  Q
    |||||||||||||||||||||| ||| || ||||||||||||||||| |   ||||| ||| ||||||||||| |||||| |||||||    
T  41417516 gcaatacaccatataatctgacatgatataaattaaatacacaaatgttcaatgattaaccatttaacttcactagaaaaatcattct 41417603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 119
Target Start/End: Complemental strand, 21320862 - 21320752
Alignment:
Q  9 gcaatacaccatataatctgacgtgacatgaattaaatacacaaatgctatttgattgaccttttaacttcaccagaaaagtcattctcatcacttcgcc 108  Q
    ||||||||||||||||||||| ||| ||| | |||||||||| ||||||   ||||||| | |||||||||| || |||||||||| | || ||||| ||    
T  21320862 gcaatacaccatataatctgatgtggcattagttaaatacacgaatgctcaatgattgatcatttaacttcatcaaaaaagtcatttttattacttcacc 21320763  T
Q  109 gtagaattttc 119  Q
     ||||||||||    
T  21320762 atagaattttc 21320752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 25653703 - 25653650
Alignment:
Q  1 gcaaatgcgcaatacaccatataatctgacgtgacatgaattaaatacacaaat 54  Q
    ||||||| ||||||||||||| |||||||||||| |||||||||||||||||||    
T  25653703 gcaaatgtgcaatacaccatacaatctgacgtgatatgaattaaatacacaaat 25653650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 8742014 - 8742064
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcctt 122  Q
    |||||||||||||||||||||||||||| ||||| || |||||||||||||    
T  8742014 ttaacttcaccagaaaagtcattctcatgacttcaccatagaattttcctt 8742064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 19119907 - 19119857
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcctt 122  Q
    |||||||||||| ||||||||||||||| ||||| || |||||||||||||    
T  19119907 ttaacttcaccacaaaagtcattctcatgacttcaccatagaattttcctt 19119857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 26411416 - 26411363
Alignment:
Q  1 gcaaatgcgcaatacaccatataatctgacgtgacatgaattaaatacacaaat 54  Q
    |||||||  |||||||||||||||| |||||||||||| |||||||||| ||||    
T  26411416 gcaaatgtacaatacaccatataatttgacgtgacatgtattaaatacataaat 26411363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 122
Target Start/End: Complemental strand, 12910400 - 12910348
Alignment:
Q  70 ttttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcctt 122  Q
    |||||||||||||| |||||||||| |||| ||||| || |||||||||||||    
T  12910400 ttttaacttcaccaaaaaagtcattttcatgacttcaccatagaattttcctt 12910348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 15724538 - 15724490
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcc 120  Q
    |||||||||||| ||||||||||||||| ||||| || |||||||||||    
T  15724538 ttaacttcaccaaaaaagtcattctcataacttcaccatagaattttcc 15724490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 10053342 - 10053291
Alignment:
Q  1 gcaaatgcgcaatacaccatataatctgacgtgacatgaattaaatacacaa 52  Q
    ||||||| ||||||||| |||||||| ||||| ||||| |||||||||||||    
T  10053342 gcaaatgtgcaatacacgatataatccgacgtaacatggattaaatacacaa 10053291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 40
Target Start/End: Complemental strand, 27579139 - 27579108
Alignment:
Q  9 gcaatacaccatataatctgacgtgacatgaa 40  Q
    ||||||||||||||||||||||||||||||||    
T  27579139 gcaatacaccatataatctgacgtgacatgaa 27579108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 118
Target Start/End: Complemental strand, 5837599 - 5837557
Alignment:
Q  76 cttcaccagaaaagtcattctcatcacttcgccgtagaatttt 118  Q
    |||||||||||||||||||||||| | ||| ||||||||||||    
T  5837599 cttcaccagaaaagtcattctcatgaattcaccgtagaatttt 5837557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 8466793 - 8466743
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcctt 122  Q
    |||||||||||||||||||||||||||| || ||  | |||||||||||||    
T  8466793 ttaacttcaccagaaaagtcattctcatgacctcatcatagaattttcctt 8466743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 13956472 - 13956522
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcctt 122  Q
    |||||||||  |||||||||||| |||| ||||| ||||||||||||||||    
T  13956472 ttaacttcatgagaaaagtcattttcatgacttcaccgtagaattttcctt 13956522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 120
Target Start/End: Complemental strand, 22019682 - 22019632
Alignment:
Q  70 ttttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcc 120  Q
    ||||||||||||||||||||||||||| || ||||| || ||||| |||||    
T  22019682 ttttaacttcaccagaaaagtcattctaataacttcaccatagaaatttcc 22019632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 22974209 - 22974259
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcctt 122  Q
    |||||||||||| |||| |||||||||| ||||| || |||||||||||||    
T  22974209 ttaacttcaccaaaaaaatcattctcataacttcaccatagaattttcctt 22974259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 118
Target Start/End: Original strand, 25501053 - 25501099
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaatttt 118  Q
    ||||||| |||||||||||||||||||| ||||| || |||||||||    
T  25501053 ttaactttaccagaaaagtcattctcatgacttcaccatagaatttt 25501099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 118
Target Start/End: Complemental strand, 26268122 - 26268076
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaatttt 118  Q
    ||||||||||||||||| |||||||||| ||||| | ||||||||||    
T  26268122 ttaacttcaccagaaaaatcattctcatgacttcactgtagaatttt 26268076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 118
Target Start/End: Original strand, 27318614 - 27318660
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaatttt 118  Q
    ||||||||||||||||| |||||||||| ||||| |||| |||||||    
T  27318614 ttaacttcaccagaaaaatcattctcatgacttcaccgttgaatttt 27318660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 27330354 - 27330304
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcctt 122  Q
    |||||||||||||||||||||||| ||  ||||| || |||||||||||||    
T  27330354 ttaacttcaccagaaaagtcattcccacgacttcaccatagaattttcctt 27330304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 14409456 - 14409501
Alignment:
Q  75 acttcaccagaaaagtcattctcatcacttcgccgtagaattttcc 120  Q
    |||||||||||||| |||||||||| ||||| || |||||||||||    
T  14409456 acttcaccagaaaaatcattctcatgacttcaccatagaattttcc 14409501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 105
Target Start/End: Complemental strand, 22980841 - 22980808
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttc 105  Q
    |||||||||||||||||||||||||||| |||||    
T  22980841 ttaacttcaccagaaaagtcattctcataacttc 22980808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 33752978 - 33753031
Alignment:
Q  2 caaatgcgcaatacaccatataatctgacgtgacatgaattaaatacacaaatg 55  Q
    |||||| |||||| ||| |||||||||| |||||||  ||||||||||||||||    
T  33752978 caaatgtgcaataaaccctataatctgaagtgacattgattaaatacacaaatg 33753031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 39572867 - 39572818
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcct 121  Q
    ||||||| || ||||||||||||||||| ||||| || ||||||||||||    
T  39572867 ttaacttaactagaaaagtcattctcatgacttcaccatagaattttcct 39572818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 7693278 - 7693230
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcc 120  Q
    ||||||||||||||||||||||| | || ||||| || |||||||||||    
T  7693278 ttaacttcaccagaaaagtcattttaatgacttcaccatagaattttcc 7693230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 33848617 - 33848673
Alignment:
Q  2 caaatgcgcaatacaccatataatctgacgtgacatgaattaaatacacaaatgcta 58  Q
    |||||| |||||| | | |||||||||| |||||||  |||||||||||||||||||    
T  33848617 caaatgtgcaataaatcctataatctgaagtgacattgattaaatacacaaatgcta 33848673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 6e-30; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 19631868 - 19631746
Alignment:
Q  1 gcaaatgcgcaatacaccatataatctgacgtgacatgaattaaatacacaaatgctatttgattgaccttttaacttcaccagaaaagtcattctcatc 100  Q
    ||||||| ||||||||||||||||||| |||||||||| |||||||||||||||| |   ||||||  | |||||||||||||||||||||||||| ||     
T  19631868 gcaaatgtgcaatacaccatataatctaacgtgacatggattaaatacacaaatgttcaatgattggtcatttaacttcaccagaaaagtcattcttatg 19631769  T
Q  101 acttcgccgtagaattttccttg 123  Q
    ||||| || ||||||||||||||    
T  19631768 acttcaccatagaattttccttg 19631746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 8513281 - 8513232
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcct 121  Q
    |||||||||||||||||||||||||||| ||||| || ||||||||||||    
T  8513281 ttaacttcaccagaaaagtcattctcatgacttcaccatagaattttcct 8513232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 4318959 - 4319009
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcctt 122  Q
    |||||||||||| ||||||||||||||| ||||| || |||||||||||||    
T  4318959 ttaacttcaccaaaaaagtcattctcatgacttcaccatagaattttcctt 4319009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 130
Target Start/End: Complemental strand, 5627439 - 5627381
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttccttgaaaaaat 130  Q
    |||||||||||| |||||||||||| || ||||| || ||||||||||||| |||||||    
T  5627439 ttaacttcaccaaaaaagtcattcttatgacttcaccttagaattttccttcaaaaaat 5627381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 118
Target Start/End: Original strand, 30353494 - 30353540
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaatttt 118  Q
    |||||||||||||||||||||||||||| ||||| || |||||||||    
T  30353494 ttaacttcaccagaaaagtcattctcatgacttcaccatagaatttt 30353540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 34993949 - 34993907
Alignment:
Q  2 caaatgcgcaatacaccatataatctgacgtgacatgaattaa 44  Q
    |||||| ||||||||||||||||||||| ||||||||||||||    
T  34993949 caaatgtgcaatacaccatataatctgatgtgacatgaattaa 34993907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 121
Target Start/End: Original strand, 3880075 - 3880124
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcct 121  Q
    |||||||||||||||||||||||||| | ||||| || ||||||||||||    
T  3880075 ttaacttcaccagaaaagtcattctcgtgacttcaccatagaattttcct 3880124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 20768131 - 20768087
Alignment:
Q  75 acttcaccagaaaagtcattctcatcacttcgccgtagaattttc 119  Q
    ||||||||||||||||||||||||| ||||| || ||||||||||    
T  20768131 acttcaccagaaaagtcattctcatgacttcaccatagaattttc 20768087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 118
Target Start/End: Complemental strand, 6088956 - 6088910
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaatttt 118  Q
    ||||||||||||||||| |||||||||| ||||| || |||||||||    
T  6088956 ttaacttcaccagaaaaatcattctcatgacttcaccatagaatttt 6088910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 7235173 - 7235218
Alignment:
Q  75 acttcaccagaaaagtcattctcatcacttcgccgtagaattttcc 120  Q
    |||||||| |||||||||||||||| ||||| || |||||||||||    
T  7235173 acttcaccggaaaagtcattctcataacttcaccatagaattttcc 7235218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 1e-24; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 3 - 104
Target Start/End: Complemental strand, 16127637 - 16127536
Alignment:
Q  3 aaatgcgcaatacaccatataatctgacgtgacatgaattaaatacacaaatgctatttgattgaccttttaacttcaccagaaaagtcattctcatcac 102  Q
    ||||| |||||||| |||||||||||||||| |||| |||||||||||||||| |   ||||||||| |||||||||||||||||||||||| |||| ||    
T  16127637 aaatgtgcaatacatcatataatctgacgtgtcatggattaaatacacaaatgatcaatgattgaccatttaacttcaccagaaaagtcattttcatgac 16127538  T
Q  103 tt 104  Q
    ||    
T  16127537 tt 16127536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 10758229 - 10758309
Alignment:
Q  1 gcaaatgcgcaatacaccatataatctgacgtgacatgaattaaatacacaaatgctatttgattgaccttttaacttcac 81  Q
    |||||||  |||||||||||||||||||| ||| |||||||||||||||||||||||   ||||||||| |||||||||||    
T  10758229 gcaaatgttcaatacaccatataatctgatgtggcatgaattaaatacacaaatgctcaatgattgaccatttaacttcac 10758309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 13876848 - 13876968
Alignment:
Q  1 gcaaatgcgcaatacaccatataatctgacgtgacatgaattaaatacacaaatgctatttgattgaccttttaacttcaccagaaaagtcattctcatc 100  Q
    ||||||| | |||||||||||| || ||||||| |||  ||||||||||||||| ||   ||||||| | ||||||||||||| |||||||||| ||||     
T  13876848 gcaaatgtgtaatacaccatatgatatgacgtggcattgattaaatacacaaatactcaatgattgatcatttaacttcaccataaaagtcattttcata 13876947  T
Q  101 acttcgccgtagaattttcct 121  Q
    ||||| || ||||||||||||    
T  13876948 acttcaccatagaattttcct 13876968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 16132594 - 16132474
Alignment:
Q  1 gcaaatgcgcaatacaccatataatctgacgtgacatgaattaaatacacaaatgctatttgattgaccttttaacttcaccagaaaagtcattctcatc 100  Q
    ||||||| |||||||||| |||||||| ||||  |||| ||||||||||||||||||   | |||  || ||||||||||||| |||||||| |||  |     
T  16132594 gcaaatgtgcaatacaccgtataatctcacgttgcatggattaaatacacaaatgctcaataatttgccatttaacttcaccaaaaaagtcaatctattg 16132495  T
Q  101 acttcgccgtagaattttcct 121  Q
    ||||| || ||||||||||||    
T  16132494 acttcaccatagaattttcct 16132474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 124
Target Start/End: Complemental strand, 16415689 - 16415637
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttccttga 124  Q
    |||||||||||||||||||||||||||| ||||| || |||||||||||||||    
T  16415689 ttaacttcaccagaaaagtcattctcatgacttcaccttagaattttccttga 16415637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 1547331 - 1547281
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcctt 122  Q
    |||||||||||||||||||||||||||| ||||| || |||||||||||||    
T  1547331 ttaacttcaccagaaaagtcattctcatgacttcaccatagaattttcctt 1547281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 15964218 - 15964163
Alignment:
Q  2 caaatgcgcaatacaccatataatctgacgtgacatgaattaaatacacaaatgct 57  Q
    |||||| ||||||||| ||||||| |||||||||||  ||||||||||||||||||    
T  15964218 caaatgtgcaatacactatataatttgacgtgacatagattaaatacacaaatgct 15964163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 75 - 125
Target Start/End: Complemental strand, 14758082 - 14758032
Alignment:
Q  75 acttcaccagaaaagtcattctcatcacttcgccgtagaattttccttgaa 125  Q
    ||||||||||||||||||||||||| ||||| ||||| ||||||| |||||    
T  14758082 acttcaccagaaaagtcattctcatgacttcaccgtaaaattttctttgaa 14758032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 99
Target Start/End: Complemental strand, 25943309 - 25943219
Alignment:
Q  9 gcaatacaccatataatctgacgtgacatgaattaaatacacaaatgctatttgattgaccttttaacttcaccagaaaagtcattctcat 99  Q
    ||||||||||||||||||||||||||| |  |||||||| || ||||||   | ||||| | ||||||||||| |||||| ||||| ||||    
T  25943309 gcaatacaccatataatctgacgtgacgtcgattaaataaactaatgctcaataattgatcatttaacttcactagaaaattcattatcat 25943219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 39393427 - 39393377
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcctt 122  Q
    |||||||||  ||||||||||||||||| ||||| ||||||||||||||||    
T  39393427 ttaacttcattagaaaagtcattctcataacttcaccgtagaattttcctt 39393377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 28012185 - 28012132
Alignment:
Q  1 gcaaatgcgcaatacaccatataatctgacgtgacatgaattaaatacacaaat 54  Q
    ||||||| ||||||||||||||||| | | |||||||| |||||||||||||||    
T  28012185 gcaaatgtgcaatacaccatataatttaatgtgacatgcattaaatacacaaat 28012132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 31621688 - 31621733
Alignment:
Q  75 acttcaccagaaaagtcattctcatcacttcgccgtagaattttcc 120  Q
    ||||||| ||||||||||||||||| ||||| ||||||||||||||    
T  31621688 acttcactagaaaagtcattctcatgacttcaccgtagaattttcc 31621733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 120
Target Start/End: Complemental strand, 43579291 - 43579242
Alignment:
Q  71 tttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcc 120  Q
    ||||||||||| ||||||||||||||||| ||||| || |||||||||||    
T  43579291 tttaacttcactagaaaagtcattctcatgacttcaccatagaattttcc 43579242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 38823258 - 38823210
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcc 120  Q
    ||||||| |||||||||||||||||||| ||||| || |||||||||||    
T  38823258 ttaacttaaccagaaaagtcattctcatgacttcaccatagaattttcc 38823210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 122
Target Start/End: Original strand, 4150490 - 4150537
Alignment:
Q  75 acttcaccagaaaagtcattctcatcacttcgccgtagaattttcctt 122  Q
    |||||||||||||||||||| |||| ||||| || |||||||||||||    
T  4150490 acttcaccagaaaagtcattatcatgacttcaccatagaattttcctt 4150537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 121
Target Start/End: Original strand, 10182138 - 10182189
Alignment:
Q  70 ttttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcct 121  Q
    |||||||||||||| |||||||||| |||| ||||| || ||||||||||||    
T  10182138 ttttaacttcaccaaaaaagtcattttcatgacttcaccatagaattttcct 10182189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 11742482 - 11742532
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcctt 122  Q
    |||||||||||||||||||||||||||| ||||| |  || ||||||||||    
T  11742482 ttaacttcaccagaaaagtcattctcataacttcacgataaaattttcctt 11742532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 118
Target Start/End: Complemental strand, 15752073 - 15752027
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaatttt 118  Q
    |||||||||||| ||||||||||||||| ||||| || |||||||||    
T  15752073 ttaacttcaccaaaaaagtcattctcatgacttcaccatagaatttt 15752027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 31805013 - 31805063
Alignment:
Q  1 gcaaatgcgcaatacaccatataatctgacgtgacatgaattaaatacaca 51  Q
    ||||||| ||||||||||||||||||| ||||| |||  ||||||||||||    
T  31805013 gcaaatgtgcaatacaccatataatctaacgtggcatagattaaatacaca 31805063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 37619028 - 37619078
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcctt 122  Q
    |||||||||||| |||||||||||| || ||||| || |||||||||||||    
T  37619028 ttaacttcaccaaaaaagtcattcttataacttcaccatagaattttcctt 37619078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 2959792 - 2959743
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcct 121  Q
    ||||||||| ||||||||||||| |||| ||||| || ||||||||||||    
T  2959792 ttaacttcatcagaaaagtcattttcatgacttcaccatagaattttcct 2959743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 105
Target Start/End: Complemental strand, 21289709 - 21289676
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttc 105  Q
    |||||||||||||||||||||||||||| |||||    
T  21289709 ttaacttcaccagaaaagtcattctcatgacttc 21289676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 3309192 - 3309144
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcc 120  Q
    ||||||| |||||||||||||||||||| ||||  || |||||||||||    
T  3309192 ttaactttaccagaaaagtcattctcatgactttaccatagaattttcc 3309144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 127
Target Start/End: Complemental strand, 15168130 - 15168078
Alignment:
Q  75 acttcaccagaaaagtcattctcatcacttcgccgtagaattttccttgaaaa 127  Q
    ||||||||||||||  ||||||||||||||| |  ||||||||||||| ||||    
T  15168130 acttcaccagaaaaagcattctcatcacttcacgatagaattttcctttaaaa 15168078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 27227609 - 27227657
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcc 120  Q
    |||||||||||| |||| |||||||||| ||||| || |||||||||||    
T  27227609 ttaacttcaccaaaaaaatcattctcatgacttcaccatagaattttcc 27227657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 104
Target Start/End: Original strand, 27533112 - 27533144
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcactt 104  Q
    |||||||||||||||||||||||||||| ||||    
T  27533112 ttaacttcaccagaaaagtcattctcataactt 27533144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 9e-23; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 2704629 - 2704510
Alignment:
Q  1 gcaaatgcgcaatacaccatataatctgacgtgacatgaattaaatacacaaatgctatttgattgaccttttaacttcaccagaaaagtcattctcatc 100  Q
    ||||||| |||||||||||||||||  |||||||| ||||||||||||||||||  |   ||||||| | |||||||||||||||||||||||| ||||     
T  2704629 gcaaatgtgcaatacaccatataat--gacgtgacgtgaattaaatacacaaatattcaatgattgatcatttaacttcaccagaaaagtcattttcatg 2704532  T
Q  101 acttcgccgtagaattttcctt 122  Q
    ||||| || || ||||||||||    
T  2704531 acttcaccataaaattttcctt 2704510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 9 - 118
Target Start/End: Original strand, 20097424 - 20097537
Alignment:
Q  9 gcaatacaccatataatctgacgtgacatgaattaaatacacaaatgctatttgattgacctt----ttaacttcaccagaaaagtcattctcatcactt 104  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||    ||||||| | |    |||||||||||||||||||||||||||| ||||    
T  20097424 gcaatacactatataatctgacgtggcatgaattaaatacacaaatgcggaatgattgatcatagggttaacttcaccagaaaagtcattctcatgactt 20097523  T
Q  105 cgccgtagaatttt 118  Q
    | || |||||||||    
T  20097524 caccatagaatttt 20097537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 2 - 118
Target Start/End: Original strand, 2266786 - 2266902
Alignment:
Q  2 caaatgcgcaatacaccatataatctgacgtgacatgaattaaatacacaaatgctatttgattgaccttttaacttcaccagaaaagtcattctcatca 101  Q
    |||||| | |||||||||| |||||| ||||| |||| ||||||||||||||||||   ||||||||  ||||||||||| |||||||||||| |||| |    
T  2266786 caaatgtgtaatacaccatgtaatctaacgtggcatggattaaatacacaaatgctcaatgattgacgatttaacttcactagaaaagtcattatcatga 2266885  T
Q  102 cttcgccgtagaatttt 118  Q
    |||| || || ||||||    
T  2266886 cttcaccatataatttt 2266902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 2 - 122
Target Start/End: Original strand, 54995729 - 54995849
Alignment:
Q  2 caaatgcgcaatacaccatataatctgacgtgacatgaattaaatacacaaatgctatttgattgaccttttaacttcaccagaaaagtcattctcatca 101  Q
    |||||| |||||||| ||||||| ||||| ||||||| ||||||||| ||||||     |||||| || ||||||||||||| |||||||||| |||| |    
T  54995729 caaatgtgcaatacatcatataacctgacatgacatggattaaatacgcaaatgtacaatgattggccatttaacttcaccaaaaaagtcattatcatga 54995828  T
Q  102 cttcgccgtagaattttcctt 122  Q
    ||||  |||||||||||||||    
T  54995829 cttcatcgtagaattttcctt 54995849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 1012415 - 1012362
Alignment:
Q  1 gcaaatgcgcaatacaccatataatctgacgtgacatgaattaaatacacaaat 54  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  1012415 gcaaatgtgcaatacaccatataatctgacgtgacatggattaaatacacaaat 1012362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 17612453 - 17612338
Alignment:
Q  1 gcaaatgcgcaatacaccatataatctgacgtgacatgaattaaatacacaaatgctatttgattgaccttttaacttcaccagaaaagtcattctcatc 100  Q
    ||||||| | |||||| ||| ||||||| ||||||||||||||| ||||||||||||   ||||||||| ||||||||||  | |||| ||||||||||     
T  17612453 gcaaatgtgaaatacatcatttaatctggcgtgacatgaattaa-tacacaaatgcttaatgattgaccatttaacttcattaaaaaaatcattctcatg 17612355  T
Q  101 acttcgccgtagaattt 117  Q
    ||||| || ||||||||    
T  17612354 acttcaccatagaattt 17612338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 51204702 - 51204580
Alignment:
Q  1 gcaaatgcgcaatacaccatataatctgacgtgacatgaattaaatacacaaatgctatttgattgacctt----ttaacttcaccagaaaagtcattct 96  Q
    ||||||| ||||| ||||||||||||||| |||||||| |||||||||||||| |||   | ||||| | |    ||||||||||||||||||||||| |    
T  51204702 gcaaatgtgcaatgcaccatataatctgatgtgacatggattaaatacacaaaagctcaataattgatcatagggttaacttcaccagaaaagtcatttt 51204603  T
Q  97 catcacttcgccgtagaattttc 119  Q
     || ||||| || ||||||||||    
T  51204602 tatgacttcaccatagaattttc 51204580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 38812260 - 38812310
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcctt 122  Q
    |||||||||||||||||||||||||||| ||||| || |||||||||||||    
T  38812260 ttaacttcaccagaaaagtcattctcatgacttcaccatagaattttcctt 38812310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 9743705 - 9743653
Alignment:
Q  3 aaatgcgcaatacaccatataatctgacgtgacatgaattaaatacacaaatg 55  Q
    ||||| ||||||||||||||||| |||||| ||||| ||||||||||||||||    
T  9743705 aaatgtgcaatacaccatataatatgacgttacatggattaaatacacaaatg 9743653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 118
Target Start/End: Complemental strand, 27396664 - 27396618
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaatttt 118  Q
    |||||||||||||||||||||||||||| ||||| || |||||||||    
T  27396664 ttaacttcaccagaaaagtcattctcatgacttcaccatagaatttt 27396618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 35021198 - 35021248
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcctt 122  Q
    ||||||||||||||||||||||| |||| ||||| || |||||||||||||    
T  35021198 ttaacttcaccagaaaagtcattttcatgacttcaccatagaattttcctt 35021248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 28003152 - 28003197
Alignment:
Q  75 acttcaccagaaaagtcattctcatcacttcgccgtagaattttcc 120  Q
    ||||||||||||||||||||||||| ||||| || |||||||||||    
T  28003152 acttcaccagaaaagtcattctcatgacttcaccatagaattttcc 28003197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 49376015 - 49375966
Alignment:
Q  72 ttaacttcaccagaaaa-gtcattctcatcacttcgccgtagaattttcc 120  Q
    ||||||||||||||||| ||||||||||| ||||| ||||||||||||||    
T  49376015 ttaacttcaccagaaaaagtcattctcatgacttcaccgtagaattttcc 49375966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 38811861 - 38811813
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcc 120  Q
    ||||||||||||||||| |||||||||| ||||| || |||||||||||    
T  38811861 ttaacttcaccagaaaaatcattctcatgacttcaccatagaattttcc 38811813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 55241267 - 55241315
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcc 120  Q
    |||||||||| ||||||||||||||||| ||||| || |||||||||||    
T  55241267 ttaacttcactagaaaagtcattctcatgacttcaccatagaattttcc 55241315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 52
Target Start/End: Original strand, 17513083 - 17513126
Alignment:
Q  9 gcaatacaccatataatctgacgtgacatgaattaaatacacaa 52  Q
    |||| |||| ||||||||||||| ||||||||||||||||||||    
T  17513083 gcaacacactatataatctgacgcgacatgaattaaatacacaa 17513126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 123
Target Start/End: Original strand, 32912743 - 32912794
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttccttg 123  Q
    |||||||||||| |||||||||||| || ||||| || ||||||||||||||    
T  32912743 ttaacttcaccaaaaaagtcattcttatgacttcaccatagaattttccttg 32912794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 123
Target Start/End: Original strand, 34361654 - 34361705
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttccttg 123  Q
    |||||||||||| |||||||||||| || ||||| || ||||||||||||||    
T  34361654 ttaacttcaccaaaaaagtcattcttatgacttcaccatagaattttccttg 34361705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 122
Target Start/End: Complemental strand, 38011899 - 38011852
Alignment:
Q  75 acttcaccagaaaagtcattctcatcacttcgccgtagaattttcctt 122  Q
    ||||||||||||||||||||||||| | ||| || |||||||||||||    
T  38011899 acttcaccagaaaagtcattctcatgatttcaccatagaattttcctt 38011852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 40
Target Start/End: Complemental strand, 2570588 - 2570558
Alignment:
Q  10 caatacaccatataatctgacgtgacatgaa 40  Q
    |||||||||||||||||||||||||||||||    
T  2570588 caatacaccatataatctgacgtgacatgaa 2570558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 17272059 - 17272009
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcctt 122  Q
    |||||||||||||||||||||||| ||  ||||| || |||||||||||||    
T  17272059 ttaacttcaccagaaaagtcattcccacgacttcaccatagaattttcctt 17272009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 29584361 - 29584411
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcctt 122  Q
    |||||||||||||||||||||||| ||  ||||| || |||||||||||||    
T  29584361 ttaacttcaccagaaaagtcattcccacgacttcaccatagaattttcctt 29584411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 118
Target Start/End: Complemental strand, 47253797 - 47253751
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaatttt 118  Q
    |||||||||||| ||||||||||||||| ||||| || |||||||||    
T  47253797 ttaacttcaccaaaaaagtcattctcatgacttcaccatagaatttt 47253751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 51959968 - 51959922
Alignment:
Q  1 gcaaatgcgcaatacaccatataatctgacgtgacatgaattaaata 47  Q
    ||||||| |||||||||||||||||||||||||| ||  ||||||||    
T  51959968 gcaaatgtgcaatacaccatataatctgacgtgatatagattaaata 51959922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 55478058 - 55478108
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcctt 122  Q
    |||||||||||| |||| |||||||||| ||||| || |||||||||||||    
T  55478058 ttaacttcaccaaaaaaatcattctcatgacttcaccatagaattttcctt 55478108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 22729830 - 22729777
Alignment:
Q  1 gcaaatgcgcaatacaccatataatctgacgtgacatgaattaaatacacaaat 54  Q
    ||||||| |||||||||| |||||| ||| ||| |||| |||||||||||||||    
T  22729830 gcaaatgtgcaatacaccgtataatttgatgtggcatgcattaaatacacaaat 22729777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 22756860 - 22756913
Alignment:
Q  1 gcaaatgcgcaatacaccatataatctgacgtgacatgaattaaatacacaaat 54  Q
    ||||||| |||||||||| |||||| ||| ||| |||| |||||||||||||||    
T  22756860 gcaaatgtgcaatacaccgtataatttgatgtggcatgcattaaatacacaaat 22756913  T

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Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 25184161 - 25184112
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcct 121  Q
    |||||||||||| || |||||||||||| ||||| || ||||||||||||    
T  25184161 ttaacttcaccaaaatagtcattctcatgacttcaccatagaattttcct 25184112  T

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Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 7703565 - 7703517
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcc 120  Q
    |||||||||||||||||||||||||||| ||||   | |||||||||||    
T  7703565 ttaacttcaccagaaaagtcattctcatgactttaacatagaattttcc 7703517  T

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Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 28293237 - 28293285
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcc 120  Q
    |||||||||||  ||||||||||||||| |||||  |||||||||||||    
T  28293237 ttaacttcaccgaaaaagtcattctcatgacttcagcgtagaattttcc 28293285  T

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Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 39397966 - 39397918
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcc 120  Q
    |||||||||||| |||||||||||| || ||||| || |||||||||||    
T  39397966 ttaacttcaccataaaagtcattctaatgacttcaccatagaattttcc 39397918  T

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Target: scaffold0050 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 5709 - 5653
Alignment:
Q  1 gcaaatgcgcaatacaccatataatctgacgtgacatgaattaaatacacaaatgct 57  Q
    ||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||    
T  5709 gcaaatgtgcaatacaccatataatctaacatgacatgaattaaatacacaaatgct 5653  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 121
Target Start/End: Complemental strand, 7290828 - 7290719
Alignment:
Q  11 aatacaccatataatctgacgtgacatgaattaaatacacaaatgctatttgattgaccttttaacttcaccagaaaagtcattctcatcacttcgccgt 110  Q
    ||||| |||||||||||||||||||||||||||||  |||||||| |   ||||| ||| |||||| ||||||||||| |||||  ||| ||||| || |    
T  7290828 aatacgccatataatctgacgtgacatgaattaaacgcacaaatgatcaatgattcaccatttaacgtcaccagaaaa-tcatttgcatgacttcaccat 7290730  T
Q  111 agaattttcct 121  Q
    |||||||||||    
T  7290729 agaattttcct 7290719  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 1204974 - 1204924
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcctt 122  Q
    |||||||||||||||||||||||||||| ||||| ||||| ||||||||||    
T  1204974 ttaacttcaccagaaaagtcattctcatgacttcaccgtaaaattttcctt 1204924  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 4108843 - 4108962
Alignment:
Q  1 gcaaatgcgcaatacaccatataatctgacgtgacatgaattaaatacacaaatgctatttgattgaccttttaacttcaccagaaaagtcattctcatc 100  Q
    ||||||| ||||||||||||||||  ||||||| ||| ||||||||||||||||  |   ||||||  | |||||||| |||| |||||||||| ||||     
T  4108843 gcaaatgtgcaatacaccatataa--tgacgtggcattaattaaatacacaaatattcaatgattggtcatttaactttaccaaaaaagtcattttcatg 4108940  T
Q  101 acttcgccgtagaattttcctt 122  Q
    ||||| || || ||||||||||    
T  4108941 acttcaccataaaattttcctt 4108962  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 10555345 - 10555393
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcc 120  Q
    |||||||||||| ||||||||||||||| ||||| ||||||||||||||    
T  10555345 ttaacttcaccaaaaaagtcattctcatgacttcaccgtagaattttcc 10555393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 123
Target Start/End: Complemental strand, 16222910 - 16222859
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttccttg 123  Q
    |||| ||||||||||||||||||||||| | ||| |||||||||||||||||    
T  16222910 ttaaattcaccagaaaagtcattctcatgatttcaccgtagaattttccttg 16222859  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 130
Target Start/End: Complemental strand, 34895014 - 34894956
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttccttgaaaaaat 130  Q
    ||||||||| ||||||||||||| |||| ||||| || ||||||||||||| |||||||    
T  34895014 ttaacttcatcagaaaagtcattttcatgacttcaccatagaattttcctttaaaaaat 34894956  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 3038517 - 3038469
Alignment:
Q  9 gcaatacaccatataatctgacgtgacatgaattaaatacacaaatgct 57  Q
    |||||||||  |||||||||||||||||| ||||||||| |||||||||    
T  3038517 gcaatacactgtataatctgacgtgacataaattaaatagacaaatgct 3038469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 13307670 - 13307622
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcc 120  Q
    ||||||||||||||||| |||||||||| ||||| || |||||||||||    
T  13307670 ttaacttcaccagaaaaatcattctcatgacttcaccatagaattttcc 13307622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 23854574 - 23854622
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcc 120  Q
    |||||||||||| ||||||||||||||| ||||| ||||||| ||||||    
T  23854574 ttaacttcaccaaaaaagtcattctcatgacttcaccgtagacttttcc 23854622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 43643738 - 43643788
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcctt 122  Q
    |||||||||||| || |||||||||||| ||||| || |||||||||||||    
T  43643738 ttaacttcaccaaaatagtcattctcatgacttcaccatagaattttcctt 43643788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 121
Target Start/End: Original strand, 1150248 - 1150297
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcct 121  Q
    |||||||||||| |||||||||||| || ||||| || ||||||||||||    
T  1150248 ttaacttcaccaaaaaagtcattcttatgacttcaccatagaattttcct 1150297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 121
Target Start/End: Complemental strand, 7998402 - 7998361
Alignment:
Q  80 accagaaaagtcattctcatcacttcgccgtagaattttcct 121  Q
    |||||||||||||||||||| ||||| || ||||||||||||    
T  7998402 accagaaaagtcattctcatgacttcaccatagaattttcct 7998361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 121
Target Start/End: Original strand, 27082981 - 27083030
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcct 121  Q
    ||||||||||||||||||||| ||| || ||||| || ||||||||||||    
T  27082981 ttaacttcaccagaaaagtcagtctgatgacttcaccatagaattttcct 27083030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 120
Target Start/End: Complemental strand, 33906268 - 33906223
Alignment:
Q  75 acttcaccagaaaagtcattctcatcacttcgccgtagaattttcc 120  Q
    ||||||||||||||||||||||||| | ||| || |||||||||||    
T  33906268 acttcaccagaaaagtcattctcataatttcaccatagaattttcc 33906223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 127
Target Start/End: Original strand, 39099262 - 39099307
Alignment:
Q  82 cagaaaagtcattctcatcacttcgccgtagaattttccttgaaaa 127  Q
    |||||||||||||||||| ||||| || ||||||||||||| ||||    
T  39099262 cagaaaagtcattctcatgacttcaccatagaattttcctttaaaa 39099307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 15009289 - 15009241
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcc 120  Q
    |||||||||||| |||||||||||| || ||||| || |||||||||||    
T  15009289 ttaacttcaccaaaaaagtcattcttatgacttcaccatagaattttcc 15009241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 35735909 - 35735965
Alignment:
Q  1 gcaaatgcgcaatacaccatataatctgacgtgacatgaattaaatacacaaatgct 57  Q
    ||||||| ||||||||||||||||| | ||| ||||   ||||||||||||||||||    
T  35735909 gcaaatgtgcaatacaccatataatttaacgggacacacattaaatacacaaatgct 35735965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 41362565 - 41362517
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcc 120  Q
    |||||||||||| |||||||||| |||| ||||| || |||||||||||    
T  41362565 ttaacttcaccaaaaaagtcattttcataacttcaccatagaattttcc 41362517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 12138 - 12186
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcc 120  Q
    |||||||||||||||||||||||||||| |||||  | |||||||||||    
T  12138 ttaacttcaccagaaaagtcattctcataacttcatcatagaattttcc 12186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 100869 - 100819
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcctt 122  Q
    |||||||||||| |||| |||||||||| ||||| || |||||||||||||    
T  100869 ttaacttcaccaaaaaaatcattctcatgacttcaccatagaattttcctt 100819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 182 - 133
Alignment:
Q  72 ttaacttcaccagaaaagtcattctcatcacttcgccgtagaattttcct 121  Q
    ||||||||||||||||||||||| || | ||||| || ||||||||||||    
T  182 ttaacttcaccagaaaagtcattttcgtgacttcaccatagaattttcct 133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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