View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1698_low_44 (Length: 222)
Name: NF1698_low_44
Description: NF1698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1698_low_44 |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 20 - 203
Target Start/End: Complemental strand, 30106567 - 30106384
Alignment:
| Q |
20 |
aaacacaagactgtagcaaaaagaaatctcatattaatggcacaatacttggagagccgttggaggattaaagagctgtaattgcagctcacatcagtca |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30106567 |
aaacacaagactgtagcaaaaagaaatctcatattaatggcacaatacttggagagccgttggaggattaaagagctgtaattgcagctcacatcagtca |
30106468 |
T |
|
| Q |
120 |
actaaccagaatgtttaaatccacaaataaaggaaacttctctatgttttaggaattatcatatatgattgtgcagaaccgttg |
203 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
30106467 |
actaaccagaatgtttagctccacaaataaaggaaacttctctatgttttaggaattatcatatgtgattgtgcagaaccgttg |
30106384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 20 - 203
Target Start/End: Complemental strand, 30111201 - 30111018
Alignment:
| Q |
20 |
aaacacaagactgtagcaaaaagaaatctcatattaatggcacaatacttggagagccgttggaggattaaagagctgtaattgcagctcacatcagtca |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30111201 |
aaacacaagactgtagcaaaaagaaatctcatattaatggcacaatacttggagagccgttggaggattaaagagctgtaattgcagctcacatcagtca |
30111102 |
T |
|
| Q |
120 |
actaaccagaatgtttaaatccacaaataaaggaaacttctctatgttttaggaattatcatatatgattgtgcagaaccgttg |
203 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
30111101 |
actaaccagaatgtttagctccacaaataaaggaaacttctctatgttttaggaattatcatatgtgattgtgcagaaccgttg |
30111018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 20 - 203
Target Start/End: Complemental strand, 48641524 - 48641338
Alignment:
| Q |
20 |
aaacacaagactgtagcaaaaagaaatctcatattaatggcacaatacttggagagccgttggaggattaaagagctgtaattgcagctcacatcagtca |
119 |
Q |
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||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48641524 |
aaacacaagactgtatcaaaaagaaatctcttattaatggcacaatacttggagagtcgttggaggattaaagagctgtaattgcagctcacatcagtca |
48641425 |
T |
|
| Q |
120 |
actaaccagaatgtttaaatccacaaataaagga---aacttctctatgttttaggaattatcatatatgattgtgcagaaccgttg |
203 |
Q |
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||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||| |||||||| |||||||||| |
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| T |
48641424 |
actaaccagaatgtttagctccacaaataaaggaaacaacttctctatattttaggaattatcatatgtgattgtgtagaaccgttg |
48641338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 139; Significance: 7e-73; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 20 - 203
Target Start/End: Original strand, 23871700 - 23871885
Alignment:
| Q |
20 |
aaacacaagactgtagcaaaaagaaatctcatattaatggcacaatacttggagagccgttggaggattaaagagctgtaattgcagc--tcacatcagt |
117 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
23871700 |
aaacacaagactgtagcaaaaagaaatttcatattaatggcacaatacatgaagagccgttggaggattaaagagctgttattgcagcattcacatcagt |
23871799 |
T |
|
| Q |
118 |
caactaaccagaatgtttaaatccacaaataaaggaaacttctctatgttttaggaattatcatatatgattgtgcagaaccgttg |
203 |
Q |
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||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
23871800 |
caactaaccagaatgtttagctcagcaaataaaggaaacttctctatgttttaggaattatcatatgtgattgtgcagaaccgttg |
23871885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 16 - 203
Target Start/End: Complemental strand, 3640955 - 3640780
Alignment:
| Q |
16 |
aagaaaacacaagactgtagcaaaaagaaatctcatattaatggcacaatacttggagagccgttggaggattaaagagctgtaattgcagctcacatca |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
3640955 |
aagaaaacacaagactgtagcaaaaagaaatctcatattaatggcacaatacttggagagccgttgcaggattaaagaactgtaattgcagctcacat-- |
3640858 |
T |
|
| Q |
116 |
gtcaactaaccagaatgtttaaatccacaaataaaggaaacttctctatgttttaggaattatcatatatgattgtgcagaaccgttg |
203 |
Q |
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||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
3640857 |
----------cagaatgtttagctccacaaataaaggaaacttctctatgctttaggaattatcatatgtgattgtgcagaaccgttg |
3640780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 20 - 203
Target Start/End: Complemental strand, 26689901 - 26689715
Alignment:
| Q |
20 |
aaacacaagactgtagcaaaaagaaatctcatattaatggcacaatacttggagagccgttggaggattaaagagctgtaattgcagc--tcacatcagt |
117 |
Q |
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||||| ||||| |||||||| |||||||||||||||||| |||| ||| ||||||||||||||| |||||||||| |||||||| ||| ||| |||||| |
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| T |
26689901 |
aaacagaagaccgtagcaaagagaaatctcatattaatgacacattacatggagagccgttggaagattaaagagttgtaattggagcattcaaatcagt |
26689802 |
T |
|
| Q |
118 |
caactaaccagaatgtttaaatccacaaataaaggaaacttctctatgttttaggaattatca-tatatgattgtgcagaaccgttg |
203 |
Q |
| |
|
|||||||||||||| |||| || ||||| ||||||||||| |||||||||||||||| |||| ||| |||||||||||||| |||| |
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| T |
26689801 |
caactaaccagaatctttagctcaacaaacaaaggaaacttgtctatgttttaggaataatcattatgtgattgtgcagaacagttg |
26689715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 20 - 203
Target Start/End: Complemental strand, 26959632 - 26959446
Alignment:
| Q |
20 |
aaacacaagactgtagcaaaaagaaatctcatattaatggcacaatacttggagagccgttggaggattaaagagctgtaattgcagc--tcacatcagt |
117 |
Q |
| |
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||||| ||||| |||||||| |||||||||||||||||| |||| ||| ||||||||||||||| |||||||||| |||||||| ||| ||| |||||| |
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| T |
26959632 |
aaacagaagaccgtagcaaagagaaatctcatattaatgacacattacatggagagccgttggaagattaaagagttgtaattggagcattcaaatcagt |
26959533 |
T |
|
| Q |
118 |
caactaaccagaatgtttaaatccacaaataaaggaaacttctctatgttttaggaattatca-tatatgattgtgcagaaccgttg |
203 |
Q |
| |
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|||||||||||||| |||| || ||||| ||||||||||| |||||||||||||||| |||| ||| |||||||||||||| |||| |
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| T |
26959532 |
caactaaccagaatctttagctcaacaaacaaaggaaacttgtctatgttttaggaataatcattatgtgattgtgcagaacagttg |
26959446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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