View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1698_low_6 (Length: 435)
Name: NF1698_low_6
Description: NF1698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1698_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 5 - 414
Target Start/End: Original strand, 28469340 - 28469749
Alignment:
| Q |
5 |
ggtagattattctgtgatctagcaatctataggttttggcactcaagtctattgttctgattatatcaaagttcaagttcatcaaattgattatgtattc |
104 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
28469340 |
ggtacattattctgtgatctagcaatctataggttttggcactcaagtctattgttctgattatatcaaagttcaagttcgtcaaattgattatgtattc |
28469439 |
T |
|
| Q |
105 |
acacgaacccacttttgatcttgctaccacacaatgtttaccttttcgaagagacaaagtttcttccaacaagttgcatccttgtctactgaaaggcttt |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28469440 |
acacgaacccacttttgatcttgctaccacacaatgtttaccttttcgaagagacaaagtttcttccaacaagttgcatccttgtctactgaaaggcttt |
28469539 |
T |
|
| Q |
205 |
ttgaacggtacttgctgaaagtcccacatcagagatgatagagcctgacacaagtttataaattggagacattcctcatgttacaagatggttttgtagg |
304 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
28469540 |
ttgaacggtacttgttgaaagtcccacatcagagatgatagagcctgacacaagtttataaattggagacattcgtcatgttacaagatggttttgtagg |
28469639 |
T |
|
| Q |
305 |
gttgagtttggccaaacacaaattataggatggtttatgtgcctatccaaaatccgtcgggacacccattataagaccgctcgagtcctaggcgtggaga |
404 |
Q |
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| T |
28469640 |
gttgagtttggccaaacacaaattataggatggtttatgtgcctatccaaaatccgtcgggacacccattataagaccgctcgagtcctaggcgtggaga |
28469739 |
T |
|
| Q |
405 |
ggtctgtcga |
414 |
Q |
| |
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| |||||||| |
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| T |
28469740 |
gttctgtcga |
28469749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 5 - 176
Target Start/End: Original strand, 28486987 - 28487158
Alignment:
| Q |
5 |
ggtagattattctgtgatctagcaatctataggttttggcactcaagtctattgttctgattatatcaaagttcaagttcatcaaattgattatgtattc |
104 |
Q |
| |
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|||| |||||| ||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
28486987 |
ggtacattattttgtgatctagcaatctataggttttggcattcaagtctgttgttccgattatatcaaaattcaagttcatcaaattgattatgtattc |
28487086 |
T |
|
| Q |
105 |
acacgaacccacttttgatcttgctaccacacaatgtttaccttttcgaagagacaaagtttcttccaacaa |
176 |
Q |
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| T |
28487087 |
atgcgaacccacttttgatcttgctacaacacaatgtttaccttttcgaagagaaaaagtttcctccaacaa |
28487158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 5 - 355
Target Start/End: Original strand, 30685809 - 30686172
Alignment:
| Q |
5 |
ggtagattattctgtgatctagcaatctataggttttggcactcaagtctattgttctgattatatcaaagttcaagttcatcaaattgattatgtattc |
104 |
Q |
| |
|
|||| ||||||||||| |||| ||||||||||||||| || ||||| | |||||| | |||||||||| | ||||||||||||||||| || |||||| |
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| T |
30685809 |
ggtacattattctgtggtctaacaatctataggttttcacatacaagtttgttgttcagtttatatcaaaatccaagttcatcaaattgactacgtattc |
30685908 |
T |
|
| Q |
105 |
acacgaacccacttttgatcttgctaccacacaatgtttaccttttcgaagagacaaagtttcttccaacaa----------------gttgcatccttg |
188 |
Q |
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|||| || ||||||||||||||||| | |||||| |||||||||| || |||| ||||||| |||||||| ||||| | | || |
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| T |
30685909 |
acactaatccacttttgatcttgct-caacacaacgtttacctttctgacgagaggaagtttcctccaacaacaacacatagctacaggttgcgttcctg |
30686007 |
T |
|
| Q |
189 |
tctactgaaaggctttttgaacggtacttgctgaaagtcccacatcagagatgatagagcctgacacaagtttataaattggagacattcctcatgttac |
288 |
Q |
| |
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|||||||||| ||||||||||| ||||| |||||||||||||| ||||| || ||| ||||||| | | |||||||||||||||||||||||||||||| |
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| T |
30686008 |
tctactgaaatgctttttgaacagtactcgctgaaagtcccacgtcagatat-atatagcctgaaagatatttataaattggagacattcctcatgttac |
30686106 |
T |
|
| Q |
289 |
aagatggttttgtagggttgagtttggccaaacacaaattataggatggtttatgtgcctatccaaa |
355 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||||| ||| |||| ||||||||||||| |
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| T |
30686107 |
aagatggttttgtagggttgagtttggccgaagacaaattataagat-gttttggtgcctatccaaa |
30686172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 328 - 408
Target Start/End: Original strand, 28487296 - 28487377
Alignment:
| Q |
328 |
tataggatggtttatgtgcctatccaaaatccgtcgggacacccattataagaccgctcgagtcctaggcgtg-gagaggtc |
408 |
Q |
| |
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|||| ||||||||||||||||||| ||||||| |||||||||||||||||||||| || |||||||||||||| |||||||| |
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| T |
28487296 |
tataagatggtttatgtgcctatctaaaatccatcgggacacccattataagaccacttgagtcctaggcgtgagagaggtc |
28487377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 28487174 - 28487225
Alignment:
| Q |
176 |
agttgcatccttgtctactgaaaggctttttgaacggtacttgctgaaagtc |
227 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||||| | |||||| |
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| T |
28487174 |
agttgcatccttgtctactgaaatgctttttgaacagtacttgttaaaagtc |
28487225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 150
Target Start/End: Original strand, 38000230 - 38000303
Alignment:
| Q |
79 |
aagttcatcaaatt--gattatgtattcacacgaacccacttttgatcttgctaccacacaatgtttacctttt |
150 |
Q |
| |
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|||||||||||||| ||||| ||||||||| ||||||| |||||||| ||||| |||||||||||| ||||| |
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| T |
38000230 |
aagttcatcaaattttgattacatattcacactaacccacctttgatctggctacaacacaatgtttaactttt |
38000303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 271 - 338
Target Start/End: Original strand, 7252227 - 7252294
Alignment:
| Q |
271 |
agacattcctcatgttacaagatggttttgtagggttgagtttggccaaacacaaattataggatggt |
338 |
Q |
| |
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||||||||||||| ||||||| |||||||||||||||||||| ||| ||| |||||| || |||||| |
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| T |
7252227 |
agacattcctcatcttacaagttggttttgtagggttgagttaggctcaacccaaattctaagatggt |
7252294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 257 - 317
Target Start/End: Complemental strand, 21638328 - 21638268
Alignment:
| Q |
257 |
agtttataaattggagacattcctcatgttacaagatggttttgtagggttgagtttggcc |
317 |
Q |
| |
|
|||||||||| ||||||| |||||| |||||||||||||||||| || |||||| |||| |
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|
| T |
21638328 |
agtttataaagaggagacactcctcaccttacaagatggttttgtaaggatgagttaggcc |
21638268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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