View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1698_low_7 (Length: 417)
Name: NF1698_low_7
Description: NF1698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1698_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 18 - 409
Target Start/End: Original strand, 34442176 - 34442563
Alignment:
| Q |
18 |
ctcttgcgatgcatgatatgcactagaatgtgtggcttccagtcactcacactccaagattatgtctttgaaggaaagactcaactcttcttccataggt |
117 |
Q |
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| T |
34442176 |
ctcttgcgatgcatgatatgcactagaatgcgtggcttccagtcactcacactccaagattatgtctttgaaggaaagactcaactcttcttccataggt |
34442275 |
T |
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| Q |
118 |
gcatcctcggtcaatatctccaacattaattcggatgtgacctacaaaataaaaaatgattagaaaaattgtggcgtgacattgtcactgccgttaagag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
34442276 |
gcatcctcggtcaatatctccaacattaattcggatgtgacctacaaaataaaaaatgattataaaaattgtgacgtgacattgtcactgccgttaagag |
34442375 |
T |
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| Q |
218 |
gatttatccacctcataagtgcgagtcccccaaaatatacaacatgatcttcctgagtgatgtcactatgtcgtgttgtatgatgtgttttagaannnnn |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34442376 |
gatttatccacctcataagtgcgagtcccccaaaatatacaacatgatcttcctgagtgatgtcactatgtcgtgttgtatgatgtgttttagaa----t |
34442471 |
T |
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| Q |
318 |
nnnnnnatgcattttagataagtcttaagtagttttagacagtttggagatgaaaatatcaagaaaatcaaggttcctgatccagaataatc |
409 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
34442472 |
ttttttatgcattttcgataagtcttaagtagttttagacagtttggagatgaaaatatcaagaaaatcaaggttcctggtccagaacaatc |
34442563 |
T |
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