View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1698_low_9 (Length: 396)

Name: NF1698_low_9
Description: NF1698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1698_low_9
NF1698_low_9
[»] chr6 (8 HSPs)
chr6 (18-382)||(33710912-33711278)
chr6 (178-373)||(21198823-21199019)
chr6 (158-301)||(21313702-21313845)
chr6 (159-276)||(21173086-21173206)
chr6 (159-202)||(21166711-21166754)
chr6 (161-224)||(20998350-20998416)
chr6 (159-199)||(21218114-21218154)
chr6 (207-301)||(21108810-21108904)
[»] scaffold0060 (1 HSPs)
scaffold0060 (184-364)||(21709-21888)
[»] chr8 (1 HSPs)
chr8 (159-276)||(24943669-24943786)
[»] scaffold0016 (1 HSPs)
scaffold0016 (161-301)||(70767-70906)
[»] scaffold0272 (2 HSPs)
scaffold0272 (206-301)||(8717-8811)
scaffold0272 (162-222)||(3737-3797)
[»] chr1 (3 HSPs)
chr1 (34-127)||(11331221-11331314)
chr1 (34-127)||(11489242-11489335)
chr1 (28-101)||(39140681-39140754)
[»] chr7 (2 HSPs)
chr7 (28-147)||(25731471-25731590)
chr7 (81-145)||(44192094-44192158)
[»] chr4 (1 HSPs)
chr4 (73-147)||(40424541-40424615)
[»] chr5 (1 HSPs)
chr5 (245-301)||(13119797-13119853)


Alignment Details
Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 382
Target Start/End: Complemental strand, 33711278 - 33710912
Alignment:
Q  18 aagattatccggaaaaatttacaggttaataagttggatttaaatatggtctcggataaaatatgatgacataatttgattcatatagtcaacctcattt 117  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||| || || |||||||| ||||||||| ||||||||||| | |||||    
T  33711278 aagactatacggaaaaatttacaggttaataagttggatttaaatatggtctcgggtagaacatgatgacgtaatttgatccatatagtcaatcccattt 33711179  T
Q  118 aataagataagatctggttgttgttgttgt---agaggagcacatccaatggataaatgctttcttattgtaagattatgagttgttactaaattcttct 214  Q
    |||||||||||| |||||||||||||||||   |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  33711178 aataagataagacctggttgttgttgttgttgtagaggagcacatccaatggataaatgctttatgattgtaagattatgagttgttactaaattcttct 33711079  T
Q  215 tttatgtttcatctcgacttaaatataaagaagcgagaaaaggggcactaaaaatagtcccatcttaactaaaagaaatgctatgatttacttatatact 314  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  33711078 tttatgtttcatctcgacttaaatataaagaagcgagaaaa-gagcactaaaaatagtcccatcttaactaaaagaaatgctatgatttgcttatatact 33710980  T
Q  315 tcaaaatatgtaccttgtttaaagttgagctagaggttgtttgaatgttcgaaattgttcaaccttcc 382  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  33710979 tcaaaatatataacttgtttaaagttgagctagaggttgtttgaatgttcgaaattgttcaatcttcc 33710912  T

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Target: chr6; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 178 - 373
Target Start/End: Complemental strand, 21199019 - 21198823
Alignment:
Q  178 cttattgtaagattatgagttgttactaaattcttcttttatgtttcatctcgacttaaatataaagaagcgagaaaaggggcactaaaaatagtcccat 277  Q
    ||||| ||||||||||||||||||| | |||| ||||||||||||||||||| ||| |||  |||| |||| |||||  ||||||||||||||||| ||     
T  21199019 cttatagtaagattatgagttgttaatgaatttttcttttatgtttcatctcaactgaaacttaaaaaagcaagaaattgggcactaaaaatagtctcac 21198920  T
Q  278 cttaactaaaagaaatgctatgat-ttacttatatacttcaaaatatgtaccttgtttaaagttgagctagaggttgtttgaatgttcgaaattgtt 373  Q
    ||  ||||||| |||||||||||| || ||||||||||||||  |||| |||||||| ||||||||||  ||| |  |||||||||| |||||||||    
T  21198919 ctcgactaaaaaaaatgctatgatattgcttatatacttcaaggtatgcaccttgttaaaagttgagcctgagttgatttgaatgtttgaaattgtt 21198823  T

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Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 158 - 301
Target Start/End: Complemental strand, 21313845 - 21313702
Alignment:
Q  158 atccaatggataaatgctttcttattgtaagattatgagttgttactaaattcttcttttatgtttcatctcgacttaaatataaagaagcgagaaaagg 257  Q
    ||||||| |||||| | || ||||| | || ||||||| | |||||| |||||||||||||||||||| ||||||| ||| |||||||||| |||||| |    
T  21313845 atccaattgataaacgtttgcttataggaaaattatgaatcgttactgaattcttcttttatgtttcaactcgactgaaacataaagaagcaagaaaaag 21313746  T
Q  258 ggcactaaaaatagtcccatcttaactaaaagaaatgctatgat 301  Q
    || |||||| ||||||||| ||  ||  ||| ||||||||||||    
T  21313745 ggaactaaatatagtcccacctggacagaaacaaatgctatgat 21313702  T

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Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 159 - 276
Target Start/End: Complemental strand, 21173206 - 21173086
Alignment:
Q  159 tccaatggataaat---gctttcttattgtaagattatgagttgttactaaattcttcttttatgtttcatctcgacttaaatataaagaagcgagaaaa 255  Q
    ||||||||||||||   |||| ||||| ||| ||||||||||||||  | ||||||||||||||||| |||||||| | |||  ||||||||| ||||||    
T  21173206 tccaatggataaattatgcttgcttatggtatgattatgagttgttgttgaattcttcttttatgttccatctcgattgaaaattaaagaagcaagaaaa 21173107  T
Q  256 ggggcactaaaaatagtccca 276  Q
    ||| ||||||| ||| |||||    
T  21173106 gggacactaaatataatccca 21173086  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 159 - 202
Target Start/End: Complemental strand, 21166754 - 21166711
Alignment:
Q  159 tccaatggataaatgctttcttattgtaagattatgagttgtta 202  Q
    |||||||| ||||||||||||||||||||||||||||| |||||    
T  21166754 tccaatgggtaaatgctttcttattgtaagattatgagctgtta 21166711  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 224
Target Start/End: Original strand, 20998350 - 20998416
Alignment:
Q  161 caatggataaatgctttcttattgtaagattatga---gttgttactaaattcttcttttatgtttc 224  Q
    ||||||||| |||||| ||||| ||||||||||||   |||||| |||||||||||||||| |||||    
T  20998350 caatggatagatgcttgcttatagtaagattatgagttgttgttgctaaattcttcttttaagtttc 20998416  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 199
Target Start/End: Complemental strand, 21218154 - 21218114
Alignment:
Q  159 tccaatggataaatgctttcttattgtaagattatgagttg 199  Q
    |||||||||||||||||| ||||| ||||||||||||||||    
T  21218154 tccaatggataaatgcttacttatagtaagattatgagttg 21218114  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 301
Target Start/End: Complemental strand, 21108904 - 21108810
Alignment:
Q  207 attcttcttttatgtttcatctcgacttaaatataaagaagcgagaaaaggggcactaaaaatagtcccatcttaactaaaagaaatgctatgat 301  Q
    |||||| ||||| ||||||||| |||| ||| ||||||||   |||||||||||||  |||||||||||| ||  | | ||||||| ||||||||    
T  21108904 attcttgttttacgtttcatcttgactgaaacataaagaaaaaagaaaaggggcacagaaaatagtcccacctctaatgaaagaaaggctatgat 21108810  T

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Target: scaffold0060 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 184 - 364
Target Start/End: Original strand, 21709 - 21888
Alignment:
Q  184 gtaagattatgagttgttactaaattcttcttttatgtttcatctcgacttaaatataaagaagcgagaaaaggggcactaaaaatagtcccatcttaac 283  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||| | ||||||||||||||| ||||||||| || |||    
T  21709 gtaagattatgagttgttactaaattgttcttttatgtttcatctcgacttaaacttaaagaagcaataaaaggggcactaaatatagtcccacctcaac 21808  T
Q  284 taaaagaaatgctatgatttacttatatacttcaaaatatgtaccttgtttaaagttgagctagaggttgtttgaatgttc 364  Q
    ||||||||||| |||||||| || ||||||||||||||||||||| | |||||||||| |   | ||||||||||||||||    
T  21809 taaaagaaatg-tatgatttgctcatatacttcaaaatatgtaccatatttaaagttgggtgtggggttgtttgaatgttc 21888  T

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Target: chr8 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 159 - 276
Target Start/End: Complemental strand, 24943786 - 24943669
Alignment:
Q  159 tccaatggataaatgctttcttattgtaagattatgagttgttactaaattcttcttttatgtttcatctcgacttaaatataaagaagcgagaaaaggg 258  Q
    |||||||||||||||||| ||||| ||| |||||||||||||| || ||||||||||||||||| |||||||||| |||  ||||||||| |||||||||    
T  24943786 tccaatggataaatgcttgcttatggtatgattatgagttgttgctgaattcttcttttatgttccatctcgactgaaacttaaagaagcaagaaaaggg 24943687  T
Q  259 gcactaaaaatagtccca 276  Q
     |||||||||||||||||    
T  24943686 acactaaaaatagtccca 24943669  T

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Target: scaffold0016 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 161 - 301
Target Start/End: Original strand, 70767 - 70906
Alignment:
Q  161 caatggataaatgctttcttattgtaagattatgagttgttactaaattcttcttttatgtttcatctcgacttaaatataaagaagcgagaaaaggggc 260  Q
    |||||||||||||||| ||| | ||||||||||||||||||  | | ||||||||||||||| |||||| |||||||  |||| |||| |||||||  ||    
T  70767 caatggataaatgcttgcttgtagtaagattatgagttgttgatgagttcttcttttatgttccatctcaacttaaacttaaa-aagcaagaaaagatgc 70865  T
Q  261 actaaaaatagtcccatcttaactaaaagaaatgctatgat 301  Q
    |||||||||||| ||| ||  ||  ||| ||||||||||||    
T  70866 actaaaaatagttccacctcgaccgaaaaaaatgctatgat 70906  T

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Target: scaffold0272 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 206 - 301
Target Start/End: Original strand, 8717 - 8811
Alignment:
Q  206 aattcttcttttatgtttcatctcgacttaaatataaagaagcgagaaaaggggcactaaaaatagtcccatcttaactaaaagaaatgctatgat 301  Q
    |||||||||||||||||||||||||||| |||  |||| || |  ||||| | |||||||||||||||||| ||  ||  ||||||||||||||||    
T  8717 aattcttcttttatgtttcatctcgactaaaacttaaa-aaacatgaaaatgagcactaaaaatagtcccacctcgaccgaaagaaatgctatgat 8811  T

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Target: scaffold0272; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 3737 - 3797
Alignment:
Q  162 aatggataaatgctttcttattgtaagattatgagttgttactaaattcttcttttatgtt 222  Q
    |||| |||||| ||| ||||| |||||||| ||||||||| || |||||||||||||||||    
T  3737 aatgaataaatacttgcttatagtaagattttgagttgttgctgaattcttcttttatgtt 3797  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 127
Target Start/End: Complemental strand, 11331314 - 11331221
Alignment:
Q  34 atttacaggttaataagttggatttaaatatggtctcggataaaatatgatgacataatttgattcatatagtcaacctcatttaataagataa 127  Q
    ||||| |||||||||||||||||||||||||||| |  ||| ||| || ||||  ||||||||| |||| |||| | |||||||| | ||||||    
T  11331314 atttagaggttaataagttggatttaaatatggtttatgatgaaacattatgatgtaatttgatccataaagtcgatctcatttactcagataa 11331221  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 127
Target Start/End: Complemental strand, 11489335 - 11489242
Alignment:
Q  34 atttacaggttaataagttggatttaaatatggtctcggataaaatatgatgacataatttgattcatatagtcaacctcatttaataagataa 127  Q
    ||||| |||||||||||||||||||||||||||| |  ||| ||| || ||||  ||||||||| |||| |||| | |||||||| | ||||||    
T  11489335 atttagaggttaataagttggatttaaatatggtttatgatgaaacattatgatgtaatttgatccataaagtcgatctcatttactcagataa 11489242  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 101
Target Start/End: Original strand, 39140681 - 39140754
Alignment:
Q  28 ggaaaaatttacaggttaataagttggatttaaatatggtctcggataaaatatgatgacataatttgattcat 101  Q
    ||||||||||| |||||||| ||||||||  ||||||||| || |||| || || ||| | |||||||||||||    
T  39140681 ggaaaaatttagaggttaattagttggatccaaatatggtttcagatagaacattatggcgtaatttgattcat 39140754  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 28 - 147
Target Start/End: Complemental strand, 25731590 - 25731471
Alignment:
Q  28 ggaaaaatttacaggttaataagttggatttaaatatggtctcggataaaatatgatgacataatttgattcatatagtcaacctcatttaataagataa 127  Q
    ||||| |||||||||||||||| ||||||  ||||||||| ||| ||| || || ||| | |||||||||  || |||   ||||| ||||||  |||||    
T  25731590 ggaaagatttacaggttaataaattggatccaaatatggtttcgaatagaacattatggcgtaatttgatcaatgtagcagacctcgtttaatgggataa 25731491  T
Q  128 gatctggttgttgttgttgt 147  Q
    ||  ||||||||||||||||    
T  25731490 gacttggttgttgttgttgt 25731471  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 145
Target Start/End: Complemental strand, 44192158 - 44192094
Alignment:
Q  81 tgatgacataatttgattcatatagtcaacctcatttaataagataagatctggttgttgttgtt 145  Q
    |||||||||  |||||| || ||||||||||||| ||||| | ||||||| || |||||||||||    
T  44192158 tgatgacattgtttgatacaaatagtcaacctcacttaatgatataagatttgattgttgttgtt 44192094  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 147
Target Start/End: Original strand, 40424541 - 40424615
Alignment:
Q  73 ataaaatatgatgacataatttgattcatatagtcaacctcatttaataagataagatctggttgttgttgttgt 147  Q
    ||||||||| ||||| |||||| ||  || ||||| |||||||||| || |||||||  ||||||||||||||||    
T  40424541 ataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgttgttgttgt 40424615  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 301
Target Start/End: Complemental strand, 13119853 - 13119797
Alignment:
Q  245 aagcgagaaaaggggcactaaaaatagtcccatcttaactaaaagaaatgctatgat 301  Q
    |||| |||||||||||||||||||| || ||| ||  || |||||||||||||||||    
T  13119853 aagcaagaaaaggggcactaaaaattgttccacctcgaccaaaagaaatgctatgat 13119797  T

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