View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1699-Insertion-3 (Length: 142)

Name: NF1699-Insertion-3
Description: NF1699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1699-Insertion-3
NF1699-Insertion-3
[»] chr4 (10 HSPs)
chr4 (8-142)||(43034082-43034216)
chr4 (8-142)||(30537583-30537717)
chr4 (12-142)||(50150270-50150399)
chr4 (8-88)||(782900-782980)
chr4 (8-88)||(36187426-36187506)
chr4 (12-88)||(26877274-26877350)
chr4 (8-142)||(3067834-3067967)
chr4 (8-88)||(27627860-27627938)
chr4 (8-88)||(33313337-33313417)
chr4 (8-88)||(25934447-25934526)
[»] chr8 (11 HSPs)
chr8 (8-142)||(8669840-8669974)
chr8 (8-142)||(13882192-13882325)
chr8 (12-142)||(29226386-29226516)
chr8 (8-142)||(37533873-37534008)
chr8 (8-88)||(32305815-32305895)
chr8 (8-142)||(35634743-35634877)
chr8 (14-89)||(42570015-42570090)
chr8 (12-142)||(8107004-8107134)
chr8 (20-74)||(36741715-36741769)
chr8 (100-141)||(45177557-45177598)
chr8 (20-52)||(31598690-31598722)
[»] chr7 (10 HSPs)
chr7 (8-142)||(24989820-24989954)
chr7 (8-142)||(45062562-45062696)
chr7 (8-142)||(7568131-7568265)
chr7 (8-142)||(23319928-23320062)
chr7 (8-78)||(8417765-8417835)
chr7 (11-89)||(41851020-41851098)
chr7 (8-142)||(18674610-18674744)
chr7 (12-88)||(48390326-48390402)
chr7 (8-86)||(48394171-48394247)
chr7 (13-52)||(965166-965205)
[»] chr2 (15 HSPs)
chr2 (8-139)||(10448825-10448956)
chr2 (8-136)||(11964257-11964384)
chr2 (8-140)||(41435563-41435695)
chr2 (8-142)||(7105660-7105794)
chr2 (8-88)||(39778658-39778738)
chr2 (12-142)||(21345033-21345161)
chr2 (8-86)||(22066384-22066462)
chr2 (8-142)||(10700176-10700310)
chr2 (8-142)||(25187045-25187179)
chr2 (9-88)||(10728299-10728378)
chr2 (8-85)||(36191585-36191661)
chr2 (8-86)||(19926795-19926871)
chr2 (12-142)||(13693482-13693612)
chr2 (8-142)||(42993758-42993892)
chr2 (12-88)||(28831069-28831145)
[»] chr3 (15 HSPs)
chr3 (8-142)||(26848112-26848246)
chr3 (8-138)||(54748097-54748227)
chr3 (8-91)||(25095990-25096073)
chr3 (8-142)||(48905586-48905720)
chr3 (8-89)||(25313471-25313552)
chr3 (8-88)||(23026292-23026372)
chr3 (8-88)||(50834114-50834194)
chr3 (8-88)||(50841659-50841739)
chr3 (8-142)||(9663858-9663990)
chr3 (8-88)||(35613025-35613105)
chr3 (8-79)||(22515746-22515817)
chr3 (8-88)||(20922780-20922860)
chr3 (11-82)||(46320544-46320615)
chr3 (13-88)||(49794963-49795038)
chr3 (12-45)||(31612861-31612894)
[»] chr1 (18 HSPs)
chr1 (8-142)||(1553823-1553957)
chr1 (12-142)||(35050257-35050387)
chr1 (13-142)||(30222804-30222933)
chr1 (13-142)||(45192525-45192654)
chr1 (11-134)||(27332899-27333022)
chr1 (8-88)||(16130520-16130600)
chr1 (16-142)||(35428415-35428545)
chr1 (8-88)||(16129970-16130050)
chr1 (8-82)||(9411835-9411909)
chr1 (11-88)||(27846445-27846522)
chr1 (8-88)||(40988075-40988153)
chr1 (8-88)||(4813758-4813838)
chr1 (9-88)||(34546757-34546834)
chr1 (8-82)||(27654713-27654785)
chr1 (12-142)||(5800390-5800519)
chr1 (8-80)||(13879068-13879140)
chr1 (28-142)||(36834360-36834471)
chr1 (8-142)||(23933270-23933405)
[»] chr6 (3 HSPs)
chr6 (8-142)||(7243368-7243502)
chr6 (8-88)||(1365752-1365832)
chr6 (8-88)||(24338018-24338098)
[»] chr5 (8 HSPs)
chr5 (10-85)||(21262907-21262982)
chr5 (11-82)||(24868577-24868648)
chr5 (8-142)||(40385186-40385321)
chr5 (8-77)||(33314435-33314504)
chr5 (8-84)||(3097561-3097637)
chr5 (8-88)||(4237959-4238039)
chr5 (8-88)||(41174667-41174747)
chr5 (100-142)||(21262554-21262596)
[»] scaffold0067 (1 HSPs)
scaffold0067 (8-89)||(6810-6891)
[»] scaffold0057 (2 HSPs)
scaffold0057 (8-85)||(30517-30594)
scaffold0057 (10-85)||(30839-30910)
[»] scaffold0008 (1 HSPs)
scaffold0008 (8-52)||(258358-258402)


Alignment Details
Target: chr4 (Bit Score: 94; Significance: 3e-46; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 3e-46
Query Start/End: Original strand, 8 - 142
Target Start/End: Complemental strand, 43034216 - 43034082
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcatataannnnnnnaaatgtag 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||       ||||||||    
T  43034216 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagagtaattaatttaagggtattcatagaattattttaaatgtag 43034117  T
Q  108 aagcgtattaaaggaaaatgactattttcaatgta 142  Q
    ||| |||||||| ||| ||||||||||||||||||    
T  43034116 aagtgtattaaatgaagatgactattttcaatgta 43034082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 3e-34
Query Start/End: Original strand, 8 - 142
Target Start/End: Complemental strand, 30537717 - 30537583
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcatataannnnnnnaaatgtag 107  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||  ||       ||||||||    
T  30537717 gtgcccttatttattatgagagagaatattaaaagtaagtaagttggtggaataaagagtaattaatttaggggtattcatgaaaaatttttaaatgtag 30537618  T
Q  108 aagcgtattaaaggaaaatgactattttcaatgta 142  Q
    ||  |||||||| ||| ||||||||||||||||||    
T  30537617 aaatgtattaaatgaagatgactattttcaatgta 30537583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 6e-32
Query Start/End: Original strand, 12 - 142
Target Start/End: Complemental strand, 50150399 - 50150270
Alignment:
Q  12 ccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcatataannnnnnnaaatgtagaagc 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||  |       ||||||||||||    
T  50150399 ccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaaaagtaattaatttaagggtattccta-gagttttttaaatgtagaagc 50150301  T
Q  112 gtattaaaggaaaatgactattttcaatgta 142  Q
     ||||||| ||| |||| |||||||||||||    
T  50150300 atattaaatgaagatgattattttcaatgta 50150270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 782900 - 782980
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcat 88  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  782900 gtgcccttatttattatgagagagaatattaaaagtaagtaagttggtggaataaagaataattaatttaggggtattcat 782980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 36187426 - 36187506
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcat 88  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  36187426 gtgcccttatttattatgagagagaatattaaaagtaagtaagttggtggaataaagaataattaatttaggggtattcat 36187506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 26877274 - 26877350
Alignment:
Q  12 ccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcat 88  Q
    ||||||| ||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||    
T  26877274 ccttatttattatgagatagaatattaaaagtaagtaagttggtggaataaagagtaattaatttaggggtattcat 26877350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 8 - 142
Target Start/End: Original strand, 3067834 - 3067967
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcatataannnnnnnaaatgtag 107  Q
    ||||||||||| |||||||||||||| ||||||||||| ||||||  | |||||||||| ||||||||||  |||||||||  ||       ||||||||    
T  3067834 gtgcccttatttattatgagagagaaaattaaaagtaaataagttagtagaataaagaagaattaatttagaggtattcat-gaatttttctaaatgtag 3067932  T
Q  108 aagcgtattaaaggaaaatgactattttcaatgta 142  Q
    ||| |||||||| ||| ||||||||||||||||||    
T  3067933 aagtgtattaaatgaagatgactattttcaatgta 3067967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 27627860 - 27627938
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcat 88  Q
    ||||||||||| |||||||||  ||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||    
T  27627860 gtgcccttatttattatgaga--gaatattaaaagtaagtaagttggtggaataaagagtaattaatttaggggtattcat 27627938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 33313337 - 33313417
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcat 88  Q
    ||||||||||| |||||||||||||| ||||||||||| ||||||  |||||||||||  |||||||||| || |||||||    
T  33313337 gtgcccttatttattatgagagagaaaattaaaagtaaataagttagtggaataaagatgaattaatttatggatattcat 33313417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 25934447 - 25934526
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcat 88  Q
    ||||||||||| |||||||||||||| ||||||| ||| ||||||  |||||||||||  ||||||||| |||||||||||    
T  25934447 gtgcccttatttattatgagagagaaaattaaaaataaataagttagtggaataaagaggaattaattt-agggtattcat 25934526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 7e-44; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 7e-44
Query Start/End: Original strand, 8 - 142
Target Start/End: Original strand, 8669840 - 8669974
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcatataannnnnnnaaatgtag 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |        ||||||||    
T  8669840 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagagtaattaatttaagggtattcataaattttttttaaatgtag 8669939  T
Q  108 aagcgtattaaaggaaaatgactattttcaatgta 142  Q
    ||| |||||||| ||| ||||||||||||||||||    
T  8669940 aagtgtattaaatgaagatgactattttcaatgta 8669974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 2e-41
Query Start/End: Original strand, 8 - 142
Target Start/End: Original strand, 13882192 - 13882325
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcatataannnnnnnaaatgtag 107  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||       ||||||||    
T  13882192 gtgcccttattgattatgagagagaatattaaa-gtaagtaagttgatggaataaagagtaattaatttaagggtattcatagaattattttaaatgtag 13882290  T
Q  108 aagcgtattaaaggaaaatgactattttcaatgta 142  Q
    ||| |||||||| ||| ||||||||||||||||||    
T  13882291 aagtgtattaaatgaagatgactattttcaatgta 13882325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 3e-34
Query Start/End: Original strand, 12 - 142
Target Start/End: Original strand, 29226386 - 29226516
Alignment:
Q  12 ccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcatataannnnnnnaaatgtagaagc 111  Q
    |||||||||||||||  || |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||       |||||||||||     
T  29226386 ccttattgattatgaatgaaaatattaaaagtaagtaagttgatggaataaagagtaattaatttaagggtattgatagaatttttttaaatgtagaagt 29226485  T
Q  112 gtattaaaggaaaatgactattttcaatgta 142  Q
    |||||||| ||| ||||||||||||||||||    
T  29226486 gtattaaatgaagatgactattttcaatgta 29226516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 8 - 142
Target Start/End: Original strand, 37533873 - 37534008
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcatataa-nnnnnnnaaatgta 106  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||  ||||||||||||        |||||||    
T  37533873 gtgcccttattgattatgagagagaatattaaaaataagtaagttgatggaataaagagtaattaatttaaatgtattcatataattttttttaaatgta 37533972  T
Q  107 gaagcgtattaaaggaaaatgactattttcaatgta 142  Q
    |||  |||||||| ||| ||||||||||| ||||||    
T  37533973 gaaatgtattaaatgaagatgactatttttaatgta 37534008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 32305815 - 32305895
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcat 88  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  32305815 gtgcccttatttattatgagagagaatattaaaagtaagtaagttggtggaataaagaataattaatttaggggtattcat 32305895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 8 - 142
Target Start/End: Complemental strand, 35634877 - 35634743
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcatataannnnnnnaaatgtag 107  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||  ||||||| ||||||||||| || |||||||  |        |||||||     
T  35634877 gtgcccttatttattatgagagagaatattaaaagtaagtaagttggtgcgataaagagtaattaatttagggttattcatggattttttttaaatgtaa 35634778  T
Q  108 aagcgtattaaaggaaaatgactattttcaatgta 142  Q
    ||| |||||||| ||| || |||||||||||||||    
T  35634777 aagtgtattaaatgaagataactattttcaatgta 35634743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 42570015 - 42570090
Alignment:
Q  14 ttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcata 89  Q
    ||||| |||||||||||||||||||||| |||||||||||||| |||||| | ||||||||||| || ||||||||    
T  42570015 ttatttattatgagagagaatattaaaaataagtaagttgatgaaataaatagtaattaatttagggatattcata 42570090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 12 - 142
Target Start/End: Original strand, 8107004 - 8107134
Alignment:
Q  12 ccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcatataannnnnnnaaatgtagaagc 111  Q
    ||||||| ||||||||| |||| ||||||||||| ||||||  |||||||||||  |||||||||| ||||||||||  |        |||||||||||     
T  8107004 ccttatttattatgagatagaaaattaaaagtaaataagttagtggaataaagaggaattaatttaggggtattcatgaattttttttaaatgtagaagt 8107103  T
Q  112 gtattaaaggaaaatgactattttcaatgta 142  Q
    |||||||| ||| | ||||||||||||||||    
T  8107104 gtattaaatgaagaggactattttcaatgta 8107134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 36741769 - 36741715
Alignment:
Q  20 attatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaat 74  Q
    ||||| |||||||||||||||||||||||||||  |||||| |||| ||||||||    
T  36741769 attattagagagaatattaaaagtaagtaagttagtggaattaagagtaattaat 36741715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 100 - 141
Target Start/End: Complemental strand, 45177598 - 45177557
Alignment:
Q  100 aaatgtagaagcgtattaaaggaaaatgactattttcaatgt 141  Q
    ||||||||||| |||||||| ||| |||||||||||||||||    
T  45177598 aaatgtagaagtgtattaaatgaagatgactattttcaatgt 45177557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 31598690 - 31598722
Alignment:
Q  20 attatgagagagaatattaaaagtaagtaagtt 52  Q
    |||||||||||||||||||||||||| ||||||    
T  31598690 attatgagagagaatattaaaagtaattaagtt 31598722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 7e-44; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 7e-44
Query Start/End: Original strand, 8 - 142
Target Start/End: Original strand, 24989820 - 24989954
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcatataannnnnnnaaatgtag 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||       ||||||||    
T  24989820 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagagtaattaatttaagggtattcatagaatttttttaaatgtag 24989919  T
Q  108 aagcgtattaaaggaaaatgactattttcaatgta 142  Q
    ||| |||||||| ||| ||||||||||| ||||||    
T  24989920 aagtgtattaaatgaagatgactattttaaatgta 24989954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 4e-39
Query Start/End: Original strand, 8 - 142
Target Start/End: Original strand, 45062562 - 45062696
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcatataannnnnnnaaatgtag 107  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||       |||||||     
T  45062562 gtgcccttgttgattatgagagagaatattaaaagtaagtaagttgatggaataaaaagtaattaatttaagggtattcatagaatttttttaaatgtaa 45062661  T
Q  108 aagcgtattaaaggaaaatgactattttcaatgta 142  Q
    ||| |||||||| ||| ||||||||||||||||||    
T  45062662 aagtgtattaaatgaagatgactattttcaatgta 45062696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 6e-32
Query Start/End: Original strand, 8 - 142
Target Start/End: Complemental strand, 7568265 - 7568131
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcatataannnnnnnaaatgtag 107  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||  ||       ||||||||    
T  7568265 gtgcccttatttattatgaaagagaatattaaaagtaagtaagttggtggaataaagagtaattaatttaggggtattcatgaaatttttttaaatgtag 7568166  T
Q  108 aagcgtattaaaggaaaatgactattttcaatgta 142  Q
    ||  |||||||| ||| ||||||||||||||||||    
T  7568165 aaatgtattaaatgaagatgactattttcaatgta 7568131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 6e-32
Query Start/End: Original strand, 8 - 142
Target Start/End: Complemental strand, 23320062 - 23319928
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcatataannnnnnnaaatgtag 107  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||  ||       ||||||||    
T  23320062 gtgcccttatttattatgagagagaatattaaaagtaagtaagttggtggaataaagagtaattaatttaggggtattcatggaaattttttaaatgtag 23319963  T
Q  108 aagcgtattaaaggaaaatgactattttcaatgta 142  Q
    | | |||||||| ||| || |||||||||||||||    
T  23319962 aggtgtattaaacgaagataactattttcaatgta 23319928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 8417765 - 8417835
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaa 78  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  8417765 gtgcccttattaattatgagagataatattaaaagtaagtaagttgatggaataaagagtaattaatttaa 8417835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 11 - 89
Target Start/End: Complemental strand, 41851098 - 41851020
Alignment:
Q  11 cccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcata 89  Q
    |||||||| |||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| |||||||||||    
T  41851098 cccttatttattatgagagagaatattaaaagtaagtgagttggtggaataaagagtaattaatttaggggtattcata 41851020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 9e-25
Query Start/End: Original strand, 8 - 142
Target Start/End: Original strand, 18674610 - 18674744
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcatataannnnnnnaaatgtag 107  Q
    ||||||||||| ||||| |||||||||||| ||| ||||||||||| ||||||||||| ||||||||||| ||||||||||  ||       ||||||||    
T  18674610 gtgcccttatttattataagagagaatattgaaaataagtaagttggtggaataaagagtaattaatttaggggtattcatgaaatttttttaaatgtag 18674709  T
Q  108 aagcgtattaaaggaaaatgactattttcaatgta 142  Q
    ||  |||||||| ||| |||||||| |||||||||    
T  18674710 aaatgtattaaatgaagatgactatattcaatgta 18674744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 48390402 - 48390326
Alignment:
Q  12 ccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcat 88  Q
    ||||||| |||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||    
T  48390402 ccttatttattatgagtgagaatattaaaagtaagtaagttgatgaaataaaaaataattaatttaggggtattcat 48390326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 48394247 - 48394171
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattc 86  Q
    ||||||||||| ||||||| |||  ||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||    
T  48394247 gtgcccttatttattatgaaaga--atattaaaagtaagtaagttggtggaataaagagtaattaatttaggggtattc 48394171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 965205 - 965166
Alignment:
Q  13 cttattgattatgagagagaatattaaaagtaagtaagtt 52  Q
    |||||| ||||||||| |||||||||||||||||||||||    
T  965205 cttatttattatgagaaagaatattaaaagtaagtaagtt 965166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 4e-42; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 4e-42
Query Start/End: Original strand, 8 - 139
Target Start/End: Original strand, 10448825 - 10448956
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcatataannnnnnnaaatgtag 107  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||       ||||||||    
T  10448825 gtgctcttattgattatgagagagaatattaaaagtaagtaagttgatggaataaatagtaattaatttaagggtattcatataacttttttaaatgtag 10448924  T
Q  108 aagcgtattaaaggaaaatgactattttcaat 139  Q
    ||| |||||||| ||| |||||||||||||||    
T  10448925 aagtgtattaaatgaagatgactattttcaat 10448956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 8 - 136
Target Start/End: Original strand, 11964257 - 11964384
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcatataannnnnnnaaatgtag 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||       ||||||||    
T  11964257 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagagtaattaatttaagggtattcatagaa-ttttttaaatgtag 11964355  T
Q  108 aagcgtattaaaggaaaatgactattttc 136  Q
    ||| |||||||| ||| ||||||||||||    
T  11964356 aagtgtattaaatgaagatgactattttc 11964384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 8 - 140
Target Start/End: Complemental strand, 41435695 - 41435563
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcatataannnnnnnaaatgtag 107  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||  ||       ||||||||    
T  41435695 gtgcccttattgattatgagatagaatattaaaagtaaataagttgatgaaataaagagtaattaatttaagggtattcatgaaaaaaaattaaatgtag 41435596  T
Q  108 aagcgtattaaaggaaaatgactattttcaatg 140  Q
    ||| |||||||| ||| ||||||||||||||||    
T  41435595 aagtgtattaaatgaagatgactattttcaatg 41435563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 6e-32
Query Start/End: Original strand, 8 - 142
Target Start/End: Original strand, 7105660 - 7105794
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcatataannnnnnnaaatgtag 107  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||  ||       ||||||||    
T  7105660 gtgcccttatttattatgagagaaaatattaaaagtaagtaagttggtggaataaagagtaattaatttaggggtattcatgaaaaaaatttaaatgtag 7105759  T
Q  108 aagcgtattaaaggaaaatgactattttcaatgta 142  Q
    ||  |||||||| ||| ||||||||||||||||||    
T  7105760 aaatgtattaaatgaagatgactattttcaatgta 7105794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 39778738 - 39778658
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcat 88  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  39778738 gtgcccttatttattatgagagagaatattaaaagtaagtaagttggtggaataaagagtaattaatttaagggtattcat 39778658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 67; E-Value: 4e-30
Query Start/End: Original strand, 12 - 142
Target Start/End: Complemental strand, 21345161 - 21345033
Alignment:
Q  12 ccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcatataannnnnnnaaatgtagaagc 111  Q
    ||||||||||| |||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||       |||||||||||     
T  21345161 ccttattgattgtgagagagaat--taaaagtaagtaagttgatggaataaagagtaattaatttaagggtatttatagaattgttttaaatgtagaagt 21345064  T
Q  112 gtattaaaggaaaatgactattttcaatgta 142  Q
    ||| |||| ||| ||||||||||||||||||    
T  21345063 gtaataaatgaagatgactattttcaatgta 21345033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 67; E-Value: 4e-30
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 22066462 - 22066384
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattc 86  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||    
T  22066462 gtgcccttattgattatgagagagaatattaaaagtaagttagttgatggaataaaaagtaattaatttaagggtattc 22066384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 66; E-Value: 1e-29
Query Start/End: Original strand, 8 - 142
Target Start/End: Complemental strand, 10700310 - 10700176
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcatataannnnnnnaaatgtag 107  Q
    ||||||||| | |||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||| ||||||||||  ||       ||||||||    
T  10700310 gtgcccttacttattatgagagagaatattaaaagtaaataagttggtggaataaagagtaattaatttaggggtattcatggaatttttttaaatgtag 10700211  T
Q  108 aagcgtattaaaggaaaatgactattttcaatgta 142  Q
    | | |||||||| |||||| |||||||||||||||    
T  10700210 aggtgtattaaatgaaaataactattttcaatgta 10700176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 66; E-Value: 1e-29
Query Start/End: Original strand, 8 - 142
Target Start/End: Original strand, 25187045 - 25187179
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcatataannnnnnnaaatgtag 107  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||| |||||||  ||       ||||||||    
T  25187045 gtgcccttatttattatgagagagaatattaaaagtaagtaagttggtggaattaagagtaattaatttaaggatattcatggaatttttttaaatgtag 25187144  T
Q  108 aagcgtattaaaggaaaatgactattttcaatgta 142  Q
    | | |||||||| ||| || |||||||||||||||    
T  25187145 aggtgtattaaatgaagataactattttcaatgta 25187179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 9 - 88
Target Start/End: Complemental strand, 10728378 - 10728299
Alignment:
Q  9 tgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcat 88  Q
    |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||    
T  10728378 tgcccttatttattatgagagagaatattaaaagtaagtaagttggtggaataaagagtaattaatttaggggtattcat 10728299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 58; E-Value: 9e-25
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 36191661 - 36191585
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtatt 85  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||    
T  36191661 gtgcccttatttattatgagagagaatattaaaagtaagtaagttg-tggaataaagagtaattaatttaggggtatt 36191585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 19926871 - 19926795
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattc 86  Q
    ||||||||||| |||||||||||  ||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||    
T  19926871 gtgcccttatttattatgagaga--atattaaaagtaagtaagttggtggaataaagagtaattaatttaggggtattc 19926795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 12 - 142
Target Start/End: Complemental strand, 13693612 - 13693482
Alignment:
Q  12 ccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcatataannnnnnnaaatgtagaagc 111  Q
    ||||||| |||||||||||||| ||||||||||| ||||||  |||||||||||  |||||||||| ||||||||||  |        |||| ||||||     
T  13693612 ccttatttattatgagagagaaaattaaaagtaaataagttagtggaataaagaggaattaatttaggggtattcatgaatattttttaaatatagaagt 13693513  T
Q  112 gtattaaaggaaaatgactattttcaatgta 142  Q
    |||||||| ||| ||||||||||||||||||    
T  13693512 gtattaaatgaagatgactattttcaatgta 13693482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 8 - 142
Target Start/End: Complemental strand, 42993892 - 42993758
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcatataannnnnnnaaatgtag 107  Q
    |||||||||||  ||||||||||||| ||||||||||| ||||||  |||||||||||  |||||||||| ||||||||||  |        |||| |||    
T  42993892 gtgcccttatttgttatgagagagaaaattaaaagtaaataagttagtggaataaagaggaattaatttaggggtattcatggattttatttaaatatag 42993793  T
Q  108 aagcgtattaaaggaaaatgactattttcaatgta 142  Q
    ||| |||||||| ||| ||||||||||||||||||    
T  42993792 aagtgtattaaatgaagatgactattttcaatgta 42993758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 28831069 - 28831145
Alignment:
Q  12 ccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcat 88  Q
    ||||||| ||||||||||| |||||||||||||||||| ||| || |||||||| ||||||||||| ||||||||||    
T  28831069 ccttatttattatgagagaaaatattaaaagtaagtaaattggtgcaataaagagtaattaatttaggggtattcat 28831145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 2e-41; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 2e-41
Query Start/End: Original strand, 8 - 142
Target Start/End: Complemental strand, 26848246 - 26848112
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcatataannnnnnnaaatgtag 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||       || |||||    
T  26848246 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagagtaattaatttaagggtgttcatagaatttttttaactgtag 26848147  T
Q  108 aagcgtattaaaggaaaatgactattttcaatgta 142  Q
    ||| |||||||| ||| ||||||||||||||||||    
T  26848146 aagtgtattaaatgaagatgactattttcaatgta 26848112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 2e-41
Query Start/End: Original strand, 8 - 138
Target Start/End: Original strand, 54748097 - 54748227
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcatataannnnnnnaaatgtag 107  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||       ||||||||    
T  54748097 gtgcccttattgattatgagagagaatattaaaagtaagtaaattgatggaataaagagtaattaatttaagggtattcatataatttttttaaatgtag 54748196  T
Q  108 aagcgtattaaaggaaaatgactattttcaa 138  Q
    ||| |||||||| ||| || |||||||||||    
T  54748197 aagtgtattaaatgaagataactattttcaa 54748227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 25096073 - 25095990
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcatata 91  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  25096073 gtgcccttattgattatgagagagaatattaaaagtaagtaaattgatggaataaagagtaattaatttaagggtattcatata 25095990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 3e-34
Query Start/End: Original strand, 8 - 142
Target Start/End: Complemental strand, 48905720 - 48905586
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcatataannnnnnnaaatgtag 107  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||  ||       ||||||||    
T  48905720 gtgcccttatttattatgagagagaatattaaaagtaagtaagttggtggaataaagagtaattaatttaggggtattcatgaaatttttttaaatgtag 48905621  T
Q  108 aagcgtattaaaggaaaatgactattttcaatgta 142  Q
    ||  |||||||| ||| ||||||||||||||||||    
T  48905620 aaatgtattaaatgaagatgactattttcaatgta 48905586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 6e-32
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 25313471 - 25313552
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcata 89  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  25313471 gtgcccttatttattatgagagagaatattaaaagtaagtaagttggtggaataaagaataattaatttaggggtattcata 25313552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 6e-29
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 23026372 - 23026292
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcat 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||| ||||||    
T  23026372 gtgcccttattgattatgagagagaatattaaaagtaagtaagttggtggaataaagagtaattaatttaggggcattcat 23026292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 6e-29
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 50834114 - 50834194
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcat 88  Q
    ||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  50834114 gtgcccttacttattatgagagagaatattaaaagtaagtaagttggtggaataaagagtaattaatttaagggtattcat 50834194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 65; E-Value: 6e-29
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 50841739 - 50841659
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcat 88  Q
    ||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  50841739 gtgcccttacttattatgagagagaatattaaaagtaagtaagttggtggaataaagagtaattaatttaagggtattcat 50841659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 63; E-Value: 9e-28
Query Start/End: Original strand, 8 - 142
Target Start/End: Complemental strand, 9663990 - 9663858
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcatataannnnnnnaaatgtag 107  Q
    ||||||||||| |||||||||||  ||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||  ||       ||||||||    
T  9663990 gtgcccttatttattatgagaga--atattaaaagtaagtaagttggtggaataaagagtaattaatttaggggtattcatgaaatttttttaaatgtag 9663893  T
Q  108 aagcgtattaaaggaaaatgactattttcaatgta 142  Q
    ||  |||||||| ||| ||||||||||||||||||    
T  9663892 aaatgtattaaatgaagatgactattttcaatgta 9663858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 35613105 - 35613025
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcat 88  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||| ||||||||||    
T  35613105 gtgcccttatttattatgagagagaatattaaaagtaaataagttggtggaataaagagtaattaatttaggggtattcat 35613025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 60; E-Value: 6e-26
Query Start/End: Original strand, 8 - 79
Target Start/End: Original strand, 22515746 - 22515817
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaag 79  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  22515746 gtgcccttatttattatgagagagaatattaaaagtaagtaagttggtggaataaagagtaattaatttaag 22515817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 20922860 - 20922780
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcat 88  Q
    |||| |||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| || |||||||    
T  20922860 gtgctcttatttattatgagagagaatattaaaagtaagtaagttggtggaataaaaaataattaatttagggatattcat 20922780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 46320544 - 46320615
Alignment:
Q  11 cccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggt 82  Q
    |||||||| |||||||||||||||||||||||||||||||||| || |||||||| ||||||||||| ||||    
T  46320544 cccttatttattatgagagagaatattaaaagtaagtaagttggtgaaataaagagtaattaatttaggggt 46320615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 49795038 - 49794963
Alignment:
Q  13 cttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcat 88  Q
    |||||| ||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||| | ||||||||||    
T  49795038 cttatttattatgagagaaaatattaaaagtaagtaagttggtggaataaagagtaattaattaaggggtattcat 49794963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 45
Target Start/End: Complemental strand, 31612894 - 31612861
Alignment:
Q  12 ccttattgattatgagagagaatattaaaagtaa 45  Q
    ||||||| ||||||||||||||||||||||||||    
T  31612894 ccttattcattatgagagagaatattaaaagtaa 31612861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 86; Significance: 2e-41; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 2e-41
Query Start/End: Original strand, 8 - 142
Target Start/End: Original strand, 1553823 - 1553957
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcatataannnnnnnaaatgtag 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||       ||||||||    
T  1553823 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagagtaattaatttaagggtatttatagaatttttttaaatgtag 1553922  T
Q  108 aagcgtattaaaggaaaatgactattttcaatgta 142  Q
    ||| |||||||| |||  |||||||||||||||||    
T  1553923 aagtgtattaaatgaagttgactattttcaatgta 1553957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 1e-36
Query Start/End: Original strand, 12 - 142
Target Start/End: Complemental strand, 35050387 - 35050257
Alignment:
Q  12 ccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcatataannnnnnnaaatgtagaagc 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||         |||||||||||     
T  35050387 ccttattgattatgagagagaatattaaaagtaagtaagttgatgaaataaagagtaattaatttaagggtatacatattttttttttaaatgtagaagt 35050288  T
Q  112 gtattaaaggaaaatgactattttcaatgta 142  Q
    |||||||| ||| ||||||||||||||||||    
T  35050287 gtattaaatgaagatgactattttcaatgta 35050257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 13 - 142
Target Start/End: Original strand, 30222804 - 30222933
Alignment:
Q  13 cttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcatataannnnnnnaaatgtagaagcg 112  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||        |||||||||||      
T  30222804 cttattgattatgaaagagaatattaaaagtaagtaagttgatggattaaagagtaattaatttaaggatattcatatactttttttaaatgtagaagta 30222903  T
Q  113 tattaaaggaaaatgactattttcaatgta 142  Q
    ||||||| ||| ||||||||||||||||||    
T  30222904 tattaaatgaagatgactattttcaatgta 30222933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 13 - 142
Target Start/End: Complemental strand, 45192654 - 45192525
Alignment:
Q  13 cttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcatataannnnnnnaaatgtagaagcg 112  Q
    |||||| ||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||  ||       |||||||||||      
T  45192654 cttattaattatgagacagaatattaaaaataagtaagttgatggaataaagagtaattaatttaagggtattcatggaatttttttaaatgtagaagta 45192555  T
Q  113 tattaaaggaaaatgactattttcaatgta 142  Q
    ||||||| ||| ||||||||||||||||||    
T  45192554 tattaaatgaagatgactattttcaatgta 45192525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 4e-30
Query Start/End: Original strand, 11 - 134
Target Start/End: Complemental strand, 27333022 - 27332899
Alignment:
Q  11 cccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcatataannnnnnnaaatgtagaag 110  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||| ||       |||| ||||||    
T  27333022 cccttattgattatgagagaaaatattaaaagtaagtaagttaatggaataaagagtaattaatttaagggtatttatagaatttttttaaatatagaag 27332923  T
Q  111 cgtattaaaggaaaatgactattt 134  Q
     |||||||| ||| ||||||||||    
T  27332922 tgtattaaatgaagatgactattt 27332899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 6e-29
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 16130600 - 16130520
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcat 88  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||    
T  16130600 gtgcccttatttattatgagagagaatattaaaagtaagtaagttggtggaataaaaagtaattaatttaagggtattcat 16130520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 6e-29
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 35428415 - 35428545
Alignment:
Q  16 attgattatgagagagaatattaaaagtaagtaag----ttgatggaataaagaataattaatttaagggtattcatataannnnnnnaaatgtagaagc 111  Q
    |||||||||||||||||| ||||||||||||||||    ||||||||||||||| ||||||||||||||||||||||| ||       |||| |||||||    
T  35428415 attgattatgagagagaaaattaaaagtaagtaagttgattgatggaataaagagtaattaatttaagggtattcataaaaatttttaaaatatagaagc 35428514  T
Q  112 gtattaaaggaaaatgactattttcaatgta 142  Q
    || ||||| ||| ||||||||||||||||||    
T  35428515 gtgttaaatgaagatgactattttcaatgta 35428545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 16130050 - 16129970
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcat 88  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||| ||||||||||    
T  16130050 gtgcccttatttattatgagagagaatattaaaagtaagtaagttggtggaataaaaagtaattaatttaggggtattcat 16129970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 9411835 - 9411909
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggt 82  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||    
T  9411835 gtgcccttatttattatgagagagaatattaaaagtaagtaagttggtggaataaagagtaattaatttaggggt 9411909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 11 - 88
Target Start/End: Original strand, 27846445 - 27846522
Alignment:
Q  11 cccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcat 88  Q
    |||||||| ||||||||||| |||||||||||||||||||||| ||||||| | | |||||||||||||| |||||||    
T  27846445 cccttatttattatgagagataatattaaaagtaagtaagttggtggaatagatagtaattaatttaaggatattcat 27846522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 40988153 - 40988075
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcat 88  Q
    ||||||||||| |||||||||||  |||||||||||||||||||||  |||||||||| ||||||||||| ||||||||||    
T  40988153 gtgcccttatttattatgagaga--atattaaaagtaagtaagttggcggaataaagagtaattaatttaggggtattcat 40988075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 4813838 - 4813758
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcat 88  Q
    ||||||||||| |||||||||  ||||||||||||||||||||||| |||||| || | |||||||||||| |||||||||    
T  4813838 gtgcccttatttattatgagaaggaatattaaaagtaagtaagttggtggaatgaaaagtaattaatttaaaggtattcat 4813758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 34546757 - 34546834
Alignment:
Q  9 tgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcat 88  Q
    |||||||||| ||||||||| |  ||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||    
T  34546757 tgcccttatttattatgagaaa--atattaaaagtaagtaagttggtggaataaagagtaattaatttaggggtattcat 34546834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 27654713 - 27654785
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggt 82  Q
    ||||||||||| |||||||||  ||||||||||||||||||||||| ||||||||||| ||||||||||| ||||    
T  27654713 gtgcccttatttattatgaga--gaatattaaaagtaagtaagttggtggaataaagagtaattaatttaggggt 27654785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 12 - 142
Target Start/End: Complemental strand, 5800519 - 5800390
Alignment:
Q  12 ccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcatataannnnnnnaaatgtagaagc 111  Q
    ||||||| |||||||||||||| ||||||||||| ||||||  |||||||||||  |||||||||| ||||||||||  ||        ||| ||||||     
T  5800519 ccttatttattatgagagagaaaattaaaagtaaataagttagtggaataaagagaaattaatttaggggtattcat-gaattttttttaatatagaagt 5800421  T
Q  112 gtattaaaggaaaatgactattttcaatgta 142  Q
    |||||||| ||| ||||||||||||||||||    
T  5800420 gtattaaatgaagatgactattttcaatgta 5800390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 13879140 - 13879068
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagg 80  Q
    ||||||||||| ||||||||| |||||||||| ||||| ||||||| ||||| ||||| ||||||||||||||    
T  13879140 gtgcccttatttattatgagatagaatattaatagtaaataagttggtggaagaaagagtaattaatttaagg 13879068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 28 - 142
Target Start/End: Original strand, 36834360 - 36834471
Alignment:
Q  28 agagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcatataannnnnnnaaatgtagaagcgtattaaaggaaaatg 127  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||||  |||||||||  ||       ||||||||||| ||||||||  || |||    
T  36834360 agagaatattaaaagtaagtaagttggtggaataaagagtaattaattta--ggtattcat-gaaattttttaaatgtagaagtgtattaaataaagatg 36834456  T
Q  128 actattttcaatgta 142  Q
    |||||||| ||||||    
T  36834457 actatttttaatgta 36834471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 142
Target Start/End: Complemental strand, 23933405 - 23933270
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaag-taagtaagttgatggaataaagaataattaatttaagggtattcatataannnnnnnaaatgta 106  Q
    ||||||||||| |||||  |||||||||||||||  |||| |||||| | |||| |||| ||||||||||| ||||||||||  ||       |||||||    
T  23933405 gtgcccttatttattatatgagagaatattaaaaaataagaaagttggtagaatcaagagtaattaatttaggggtattcatgaaaaaaaattaaatgta 23933306  T
Q  107 gaagcgtattaaaggaaaatgactattttcaatgta 142  Q
    || |  ||||||| |||||| | |||||||||||||    
T  23933305 gaggtatattaaaagaaaataattattttcaatgta 23933270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 6e-32; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 6e-32
Query Start/End: Original strand, 8 - 142
Target Start/End: Complemental strand, 7243502 - 7243368
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcatataannnnnnnaaatgtag 107  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||  |        ||||||||    
T  7243502 gtgcccttatttattatgagagagaatattaaaagtaagtaagttggtggaataaagaataattaatttaggggtattcatggattttttttaaatgtag 7243403  T
Q  108 aagcgtattaaaggaaaatgactattttcaatgta 142  Q
    | | |||||||| ||| || |||||||||||||||    
T  7243402 aggtgtattaaatgaagataactattttcaatgta 7243368  T

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Target: chr6; HSP #2
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 1365752 - 1365832
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcat 88  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  1365752 gtgcccttatttattatgagagagaatattaaaagtaagtaagttggtggaataaagagtaattaatttaagggtattcat 1365832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 24338098 - 24338018
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcat 88  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| || |||||||    
T  24338098 gtgcccttatttattatgagagagaatattaaaagtaagtaagttggtggaataaagagtaattaatttagggttattcat 24338018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 1e-30; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 21262982 - 21262907
Alignment:
Q  10 gcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtatt 85  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  21262982 gcccatattgattatgagagagaatattaaaagtaagtaagttgatggaataaagagtaattaatttaagggtatt 21262907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 24868577 - 24868648
Alignment:
Q  11 cccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggt 82  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||    
T  24868577 cccttatttattatgagagagaatattaaaagtaagtaagttggtggaataaagagtaattaatttaggggt 24868648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 8 - 142
Target Start/End: Complemental strand, 40385321 - 40385186
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcat--ataannnnnnnaaatgt 105  Q
    ||||||||||| |||||||||||||| ||||||||||| ||||||  |||||||||||  |||||||||| ||||||||||  || |       ||||||    
T  40385321 gtgcccttatttattatgagagagaaaattaaaagtaaataagttagtggaataaagaggaattaatttaggggtattcatggatta-ttttttaaatgt 40385223  T
Q  106 agaagcgtattaaaggaaaatgactattttcaatgta 142  Q
    ||||| |||||||| ||| ||||||||||||||||||    
T  40385222 agaagtgtattaaatgaagatgactattttcaatgta 40385186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 33314435 - 33314504
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaattta 77  Q
    ||||||| ||| ||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||    
T  33314435 gtgccctcatttattatgagagagaatattaaaagtaagcaagttggtggaataaagagtaattaattta 33314504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 3097637 - 3097561
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtat 84  Q
    ||||||||||| |||||||||| ||| ||||||||||| ||||||  |||||||||||  | |||||||| ||||||    
T  3097637 gtgcccttatttattatgagagtgaaaattaaaagtaaataagttagtggaataaagaggatttaatttaggggtat 3097561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 4237959 - 4238039
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcat 88  Q
    ||||| ||||| ||||||||| |||||| |||||  |||||| ||| |||||| |||| ||||||||||| ||||||||||    
T  4237959 gtgccgttatttattatgagatagaataataaaatgaagtaaattggtggaatcaagagtaattaatttaggggtattcat 4238039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 41174747 - 41174667
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcat 88  Q
    ||||||||||| ||||||||||||||  |||||||||| ||||||  || ||||||||  |||||||| | ||||||||||    
T  41174747 gtgcccttatttattatgagagagaaagttaaaagtaaataagttagtgaaataaagaggaattaattgaggggtattcat 41174667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 100 - 142
Target Start/End: Complemental strand, 21262596 - 21262554
Alignment:
Q  100 aaatgtagaagcgtattaaaggaaaatgactattttcaatgta 142  Q
    |||||||||||||||||||| ||| ||||||||||||||||||    
T  21262596 aaatgtagaagcgtattaaatgaagatgactattttcaatgta 21262554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 54; Significance: 2e-22; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 6810 - 6891
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtattcata 89  Q
    |||| |||||| ||||||||| |||||||||||||||||||||||| | ||||||||| |||||||||||||| ||||||||    
T  6810 gtgcgcttatttattatgagaaagaatattaaaagtaagtaagttggtagaataaagagtaattaatttaaggatattcata 6891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 50; Significance: 5e-20; HSPs: 2)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 30517 - 30594
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtatt 85  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||  ||||| |||| ||||||||||| |||||||    
T  30517 gtgcccttatttattatgagagacaatattaaaagtaagtaagttggcggaatcaagagtaattaatttaggggtatt 30594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057; HSP #2
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 30910 - 30839
Alignment:
Q  10 gcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagaataattaatttaagggtatt 85  Q
    ||||||||| |||||||||||||||||||||    |||| |||| |||||| |||| ||||||||||| |||||||    
T  30910 gcccttatttattatgagagagaatattaaa----agtatgttggtggaatcaagagtaattaatttaggggtatt 30839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 33; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 258402 - 258358
Alignment:
Q  8 gtgcccttattgattatgagagagaatattaaaagtaagtaagtt 52  Q
    ||||| ||||| |||||||||||||||||||||| ||||||||||    
T  258402 gtgcctttatttattatgagagagaatattaaaattaagtaagtt 258358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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