View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1699-Insertion-7 (Length: 240)
Name: NF1699-Insertion-7
Description: NF1699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1699-Insertion-7 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 7 - 240
Target Start/End: Original strand, 13283007 - 13283240
Alignment:
| Q |
7 |
agatgttaggtgcgatatacatcattaatatttttatagatacaaatgttagtatattagtcgttatgtcagtattttattcttcactagagttttatac |
106 |
Q |
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| T |
13283007 |
agatgttaggtgcgatatacatcattaatatttttatagatacaaatgttagtatattagtcgttatgtcactattttgttcttcactagagttttatac |
13283106 |
T |
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| Q |
107 |
tcgatgtttcatccttcaaccgagctcgtatcacttgagttactcaattcttattttacattacttcattctgtatgcatctttatatattttgaagtat |
206 |
Q |
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| T |
13283107 |
tcgatgtttcatccttcaaccgagctcgtatcacttgagttactcaattcttgttttacattacttgattctgtatgcatctttatatattttgaagtat |
13283206 |
T |
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| Q |
207 |
aatatggagttatggacattaattatattgttta |
240 |
Q |
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| T |
13283207 |
aatatggagttatggacattaattatattgttta |
13283240 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 26533892 - 26533843
Alignment:
| Q |
35 |
tatttttatagatacaaatgttagtatattagtcgttatgtcagtatttt |
84 |
Q |
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| T |
26533892 |
tatttttttatatccaaatgttagtatattagttgttatgttagtatttt |
26533843 |
T |
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