View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16990_low_2 (Length: 251)
Name: NF16990_low_2
Description: NF16990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16990_low_2 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 9 - 251
Target Start/End: Original strand, 33578909 - 33579155
Alignment:
| Q |
9 |
gattatactctatttattagcattgatatgattttcttatttttatttttcctttctcgcgagattctctcttatatattaatatgcacaacctcactg- |
107 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33578909 |
gattattctctatttattagcattgatatgattttcttatttttatttttcctttctcgcgagattctctcttatatattaatatgcacaacctcactgt |
33579008 |
T |
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| Q |
108 |
-aaacacaagttgaccattctatattattcaacttggtactagatctctctggtttttgtcctttcctctgttttgattttaaggtttcagtcactccga |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
33579009 |
gaaacacaagttgaccattctatattattcaacttggtactagatctctctggtttttgtcctttcctctgttttgattgtaaggtttcagtcgctccga |
33579108 |
T |
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| Q |
207 |
gcact--cacagcgtgttctttgaaactcggtcaaaatcattgcgcc |
251 |
Q |
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| T |
33579109 |
gcactcacacagcgtgttctttgaaactcggtcaaaatcattgcgcc |
33579155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 136
Target Start/End: Complemental strand, 19935582 - 19935449
Alignment:
| Q |
9 |
gattatactctatttattagcattgatatgattttcttatttt-tatttttcctttctcgcgagattctctcttatatattaatatgcacaacctcact- |
106 |
Q |
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|||||| ||||||||||| | |||||| | |||| |||||||| | |||||||||||| | ||||||||||||| | ||| | | |||||||||||| | |
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| T |
19935582 |
gattattctctatttatttggattgatttaatttccttattttatgtttttcctttcttgagagattctctcttgtgtataagtttgcacaacctcattg |
19935483 |
T |
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| Q |
107 |
----gaaacacaagttgaccattctatattattc |
136 |
Q |
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| T |
19935482 |
tgaagaaatacaagttgatcattctatattattc |
19935449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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