View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16991_high_13 (Length: 518)

Name: NF16991_high_13
Description: NF16991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16991_high_13
NF16991_high_13
[»] chr7 (2 HSPs)
chr7 (20-506)||(31871727-31872186)
chr7 (334-421)||(23365284-23365372)
[»] chr5 (5 HSPs)
chr5 (330-506)||(14395234-14395410)
chr5 (334-422)||(13208700-13208789)
chr5 (334-425)||(2707443-2707533)
chr5 (334-397)||(34064854-34064917)
chr5 (381-470)||(13209247-13209334)
[»] chr3 (1 HSPs)
chr3 (334-422)||(42153169-42153258)
[»] scaffold0085 (1 HSPs)
scaffold0085 (334-422)||(39096-39184)
[»] chr8 (2 HSPs)
chr8 (334-425)||(29703435-29703526)
chr8 (334-385)||(5664264-5664315)
[»] chr4 (4 HSPs)
chr4 (334-394)||(56459730-56459790)
chr4 (332-422)||(4782517-4782608)
chr4 (333-399)||(30765435-30765501)
chr4 (335-379)||(19330200-19330244)
[»] chr1 (2 HSPs)
chr1 (334-394)||(19402353-19402413)
chr1 (335-379)||(45817318-45817362)
[»] chr2 (1 HSPs)
chr2 (334-398)||(30874719-30874782)


Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 20 - 506
Target Start/End: Original strand, 31871727 - 31872186
Alignment:
Q  20 caaagtacctaccaataacaagtaaattgaattcgctataggaaaatacccaatttacacaggaaatcgattaaggaaggattatacttacagagcgaag 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  31871727 caaagtacctaccaataacaagtaaattgaattcgctataggaaaatacccagtttacacaggaaatcgattaaggaaggattatacttacagagcgaag 31871826  T
Q  120 agagaatggaacagagttctgagtgtgaagtgtagttgttgagttcagagttcagagttcagagcccatgaatgaatctcttatcgag---nnnnnnnnn 216  Q
    ||||||||||||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||||||||||||||||                
T  31871827 agagaatggaacagagttctgagtgtgaagtgtagctgtt-------gagttcagagttcagagcccatgaatgaatctcttatcgagtctctatgtttt 31871919  T
Q  217 nnnnttttccctcacatacgttgtgctgttgttgttataggataaaagggtcattttctattatccacaaatttatattcgattacagggcatttctggt 316  Q
        |||| |||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||| ||| ||    
T  31871920 tttttttttcctcacatacgttgtcttgttgttgttataggataaaagggtcattttcttttatccacaaatttatatccgattagagggcatatctagt 31872019  T
Q  317 gagaatgagttatttatttatgtgagaatggtaagaacagttatcaacctttagataaaaaatgaatggaccagattaaaagcttaacatgtgtttcacc 416  Q
     |||||||||||||||||||||||||||                      |||||||||||||||||||||||||||||||||||||||||| ||||  |    
T  31872020 aagaatgagttatttatttatgtgagaa----------------------ttagataaaaaatgaatggaccagattaaaagcttaacatgtatttctgc 31872097  T
Q  417 ctattctataaaaattcatgaacccatatacgcttctttgttcttcgcgttccaataccaagcttatctctacgtttcttcttcttcttc 506  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31872098 ctattctataaaaattcatgaacccacatac-cttctttgttcttcgcgttccaataccaagcttatctctacgtttcttcttcttcttc 31872186  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 334 - 421
Target Start/End: Complemental strand, 23365372 - 23365284
Alignment:
Q  334 ttatgtgagaatggtaagaacagttatcaacctttagataaaaaatgaatggaccagatt-aaaagcttaacatgtgtttcaccctatt 421  Q
    |||||||||||| || |||||| ||| |||||||||||||||||||||||| |||||||| |||||||| |||||||| ||||||||||    
T  23365372 ttatgtgagaattgtgagaacacttaccaacctttagataaaaaatgaatgaaccagattaaaaagcttcacatgtgtctcaccctatt 23365284  T

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Target: chr5 (Bit Score: 145; Significance: 4e-76; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 330 - 506
Target Start/End: Complemental strand, 14395410 - 14395234
Alignment:
Q  330 ttatttatgtgagaatggtaagaacagttatcaacctttagataaaaaatgaatggaccagattaaaagcttaacatgtgtttcaccctattctataaaa 429  Q
    ||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  14395410 ttatttatgtgagaatggtgagaacacttatcaacctttggataaaaaatgaatggaccagattaaaaacttaacatgagtttcaccctattctataaaa 14395311  T
Q  430 attcatgaacccatatacgcttctttgttcttcgcgttccaataccaagcttatctctacgtttcttcttcttcttc 506  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  14395310 attcatgaacccacctacgcttctttgttcttcgcgttccaataccaagcttatctctacgtgtcttcttcttcttc 14395234  T

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Target: chr5; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 334 - 422
Target Start/End: Original strand, 13208700 - 13208789
Alignment:
Q  334 ttatgtgagaatggtaagaacagttatcaacctttagataaaa-aatgaatggaccagattaaaagcttaacatgtgtttcaccctattc 422  Q
    ||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||    
T  13208700 ttatgtgagaatggtgagaacacttatcaacctttagataaaaaaatgaatggaccagattaaaagcttcacatgtgtctcaccctattc 13208789  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 334 - 425
Target Start/End: Original strand, 2707443 - 2707533
Alignment:
Q  334 ttatgtgagaatggtaagaacagttatcaacctttagataaaaaatgaatggaccagattaaaagcttaacatgtgtttcaccctattctat 425  Q
    |||| |||||||||| |||||  ||||||||||||||||||||||| ||||| ||||||||||||  | |||||||| | | ||||||||||    
T  2707443 ttatatgagaatggtgagaacc-ttatcaacctttagataaaaaataaatggtccagattaaaaggctcacatgtgtcttaacctattctat 2707533  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 334 - 397
Target Start/End: Complemental strand, 34064917 - 34064854
Alignment:
Q  334 ttatgtgagaatggtaagaacagttatcaacctttagataaaaaatgaatggaccagattaaaa 397  Q
    |||| |||||||||| |||||| |||||||||||||||| |||||| ||||| | |||||||||    
T  34064917 ttatatgagaatggtgagaacacttatcaacctttagattaaaaataaatggtctagattaaaa 34064854  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 470
Target Start/End: Complemental strand, 13209334 - 13209247
Alignment:
Q  381 aatggaccagattaaaagcttaacatgtgtttcaccctattctataaaaattcatgaacccatatacgcttctttgttcttcgcgttcca 470  Q
    |||||| |||||||||||||| |||||||| ||||||||||| || ||  |||||||||||  | || ||||||||||||| | ||||||    
T  13209334 aatggatcagattaaaagcttcacatgtgtctcaccctattcaatcaattttcatgaaccc--acacacttctttgttctttgtgttcca 13209247  T

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Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 334 - 422
Target Start/End: Original strand, 42153169 - 42153258
Alignment:
Q  334 ttatgtgagaatggtaagaacagttatcaaccttt-agataaaaaatgaatggaccagattaaaagcttaacatgtgtttcaccctattc 422  Q
    ||||||||||||||| |||||| |||||| ||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  42153169 ttatgtgagaatggtgagaacacttatcagccttttagataaaaaatgaatggaccagattaaaagcttatcatgtgtctcaccctattc 42153258  T

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Target: scaffold0085 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 334 - 422
Target Start/End: Original strand, 39096 - 39184
Alignment:
Q  334 ttatgtgagaatggtaagaacagttatcaacctttagataaaaaatgaatggaccagattaaaagcttaacatgtgtttcaccctattc 422  Q
    ||||||||||| | | |||||| || |||  ||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||    
T  39096 ttatgtgagaacgatgagaacacttgtcagtctttagataaaaaatgaatggaccagattaaaaacttcacatgtgtctcaccctattc 39184  T

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Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 334 - 425
Target Start/End: Complemental strand, 29703526 - 29703435
Alignment:
Q  334 ttatgtgagaatggtaagaacagttatcaacctttagataaaaaatgaatggaccagattaaaagcttaacatgtgtttcaccctattctat 425  Q
    ||||||||||||||| |||||| |||||||||||||||| |||||| ||||| | | ||||||| ||| |||||||| ||| ||||||||||    
T  29703526 ttatgtgagaatggtgagaacacttatcaacctttagatcaaaaattaatggtctaaattaaaaacttcacatgtgtctcatcctattctat 29703435  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 385
Target Start/End: Complemental strand, 5664315 - 5664264
Alignment:
Q  334 ttatgtgagaatggtaagaacagttatcaacctttagataaaaaatgaatgg 385  Q
    |||| |||||||||| |||||| |||||||||||||||| |||||| |||||    
T  5664315 ttatatgagaatggtgagaacacttatcaacctttagatgaaaaataaatgg 5664264  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 394
Target Start/End: Complemental strand, 56459790 - 56459730
Alignment:
Q  334 ttatgtgagaatggtaagaacagttatcaacctttagataaaaaatgaatggaccagatta 394  Q
    |||| |||||||||| |||||| |||||||||||||||| |||||| ||||| ||||||||    
T  56459790 ttatatgagaatggtgagaacacttatcaacctttagattaaaaataaatggtccagatta 56459730  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 332 - 422
Target Start/End: Complemental strand, 4782608 - 4782517
Alignment:
Q  332 atttatgtgagaatggtaagaacagttatcaacctttagataaaaaatgaatggaccagatt-aaaagcttaacatgtgtttcaccctattc 422  Q
    ||||||||||||||||| |||||| |||||||  |||| ||||||| |||| ||| |||||| ||||| || |||||||| ||| |||||||    
T  4782608 atttatgtgagaatggtgagaacacttatcaatttttaaataaaaattgaaaggatcagattaaaaagtttcacatgtgtctcatcctattc 4782517  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 333 - 399
Target Start/End: Complemental strand, 30765501 - 30765435
Alignment:
Q  333 tttatgtgagaatggtaagaacagttatcaacctttagataaaaaatgaatggaccagattaaaagc 399  Q
    ||||||| |||||||| |||| | |||||||||||||||| |||||  | ||| |||||||||||||    
T  30765501 tttatgtaagaatggtgagaatacttatcaacctttagatcaaaaacaagtggtccagattaaaagc 30765435  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 335 - 379
Target Start/End: Complemental strand, 19330244 - 19330200
Alignment:
Q  335 tatgtgagaatggtaagaacagttatcaacctttagataaaaaat 379  Q
    ||||||||||||||| ||||| ||||||||| |||||| ||||||    
T  19330244 tatgtgagaatggtaggaacaattatcaaccattagattaaaaat 19330200  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 394
Target Start/End: Original strand, 19402353 - 19402413
Alignment:
Q  334 ttatgtgagaatggtaagaacagttatcaacctttagataaaaaatgaatggaccagatta 394  Q
    |||| |||||||||| |||||| |||||||||||||||| |||||| ||||| ||||||||    
T  19402353 ttatatgagaatggtgagaacacttatcaacctttagattaaaaataaatggtccagatta 19402413  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 335 - 379
Target Start/End: Original strand, 45817318 - 45817362
Alignment:
Q  335 tatgtgagaatggtaagaacagttatcaacctttagataaaaaat 379  Q
    ||||||||||||||| ||||| ||||||||| |||||| ||||||    
T  45817318 tatgtgagaatggtaggaacaattatcaaccattagattaaaaat 45817362  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 334 - 398
Target Start/End: Original strand, 30874719 - 30874782
Alignment:
Q  334 ttatgtgagaatggtaagaacagttatcaacctttagataaaaaatgaatggaccagattaaaag 398  Q
    ||||||||||||| |||||| | ||||||||||||||||  |||||||||||   ||||||||||    
T  30874719 ttatgtgagaatgataagaataattatcaacctttagat-taaaatgaatggttaagattaaaag 30874782  T

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