View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16991_high_17 (Length: 476)
Name: NF16991_high_17
Description: NF16991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16991_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 15 - 270
Target Start/End: Complemental strand, 4144605 - 4144347
Alignment:
| Q |
15 |
tcaataggatctatgcaaaacatttgagtgaatgtgttgctcaagtatatgcaagcacatgcatgatgcatattttaaactgatatatttttaattaatt |
114 |
Q |
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| T |
4144605 |
tcaatgggatctatgcaaaacatttgagtgaatgtgttgctcaagtatatgcaagcacatgcatgatgcatattttaaactgatatatttttaattaatt |
4144506 |
T |
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| Q |
115 |
atagcagagttttatatattgtaaattaatcttttactatatgtt---actatttagcggtgtatagttaaacaatgagaagagaagagattaaacataa |
211 |
Q |
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| T |
4144505 |
atagcagagttttatatattgtaaattaatcttttactatatgttactactatttagcagtgtatagttaaacaatgagaagagaagagattaaacataa |
4144406 |
T |
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| Q |
212 |
tgcatggatataacttggacaaaaactgacatgaacataaaccaactattagggacaac |
270 |
Q |
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| T |
4144405 |
tgcatggatataacttggacaaaaactgacatgaacataaaccaactattagggacaac |
4144347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 336 - 458
Target Start/End: Complemental strand, 4144281 - 4144158
Alignment:
| Q |
336 |
cttatttaaccctccttcaaaaaagaaa-taacacttacttaacccctaaaatatttcaaaatttaaattgaaacttgttatttaacagagtataaattt |
434 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4144281 |
cttatttaaccctccttcaaaaaagaaaataacacttacttaacccctaaaatatttcaaaatttaaattgaaacttgttatttaacagagtataaattt |
4144182 |
T |
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| Q |
435 |
gcaattcgcatacaacaactagaa |
458 |
Q |
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| T |
4144181 |
gcaattcgcatacaacaactagaa |
4144158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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