View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16991_high_2 (Length: 820)

Name: NF16991_high_2
Description: NF16991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16991_high_2
NF16991_high_2
[»] chr2 (8 HSPs)
chr2 (19-364)||(31805537-31805882)
chr2 (653-696)||(1692737-1692780)
chr2 (653-698)||(8761589-8761634)
chr2 (653-698)||(37119283-37119328)
chr2 (660-698)||(19159939-19159977)
chr2 (661-698)||(9718393-9718430)
chr2 (657-698)||(10977084-10977125)
chr2 (657-698)||(19967413-19967454)
[»] chr8 (9 HSPs)
chr8 (654-698)||(40795369-40795413)
chr8 (653-696)||(39433401-39433444)
chr8 (656-696)||(2554239-2554279)
chr8 (659-698)||(24195246-24195285)
chr8 (656-698)||(17062364-17062406)
chr8 (656-698)||(17585952-17585994)
chr8 (656-698)||(18148827-18148869)
chr8 (653-690)||(12251590-12251627)
chr8 (653-690)||(39443581-39443618)
[»] chr3 (14 HSPs)
chr3 (655-699)||(25527862-25527906)
chr3 (653-690)||(22762396-22762433)
chr3 (653-696)||(36170117-36170160)
chr3 (663-698)||(42784958-42784993)
chr3 (662-727)||(7651186-7651254)
chr3 (656-698)||(38130984-38131026)
chr3 (656-698)||(38559921-38559963)
chr3 (652-698)||(53996289-53996335)
chr3 (653-698)||(10843806-10843851)
chr3 (653-698)||(19468442-19468487)
chr3 (653-698)||(23332641-23332686)
chr3 (653-698)||(36354544-36354589)
chr3 (661-698)||(38573598-38573635)
chr3 (654-699)||(43011314-43011359)
[»] chr1 (19 HSPs)
chr1 (654-690)||(4770661-4770697)
chr1 (656-698)||(12213987-12214029)
chr1 (654-696)||(41032923-41032965)
chr1 (659-696)||(11410624-11410661)
chr1 (657-698)||(32209863-32209904)
chr1 (654-698)||(28832196-28832240)
chr1 (655-690)||(5553034-5553069)
chr1 (659-698)||(10841897-10841936)
chr1 (659-690)||(15382852-15382883)
chr1 (653-696)||(21965919-21965962)
chr1 (655-698)||(35690205-35690248)
chr1 (662-696)||(7550896-7550930)
chr1 (653-699)||(26329146-26329192)
chr1 (656-698)||(27853349-27853391)
chr1 (656-698)||(51067919-51067961)
chr1 (653-690)||(6423795-6423832)
chr1 (665-698)||(17339218-17339251)
chr1 (653-698)||(29935974-29936019)
chr1 (653-698)||(44365973-44366018)
[»] chr7 (8 HSPs)
chr7 (657-696)||(2450575-2450614)
chr7 (654-698)||(3672577-3672621)
chr7 (654-698)||(43539129-43539173)
chr7 (654-696)||(27993056-27993098)
chr7 (660-698)||(34722046-34722084)
chr7 (653-698)||(28200410-28200455)
chr7 (653-690)||(38435959-38435996)
chr7 (653-690)||(42995267-42995304)
[»] chr4 (7 HSPs)
chr4 (651-698)||(19479502-19479549)
chr4 (655-698)||(24837498-24837541)
chr4 (653-690)||(44724374-44724411)
chr4 (655-695)||(39489599-39489639)
chr4 (654-696)||(35021494-35021536)
chr4 (657-698)||(11949688-11949729)
chr4 (653-690)||(26871719-26871756)
[»] chr6 (9 HSPs)
chr6 (656-698)||(13496110-13496152)
chr6 (655-727)||(2445292-2445367)
chr6 (656-727)||(9311923-9311997)
chr6 (653-696)||(18313924-18313967)
chr6 (656-690)||(21857084-21857118)
chr6 (657-698)||(4379510-4379551)
chr6 (653-698)||(12700446-12700491)
chr6 (655-727)||(24623310-24623385)
chr6 (657-698)||(28951394-28951435)
[»] chr5 (12 HSPs)
chr5 (648-698)||(42608890-42608940)
chr5 (656-697)||(33369439-33369480)
chr5 (662-698)||(13864344-13864380)
chr5 (656-698)||(18589892-18589934)
chr5 (656-698)||(22585646-22585688)
chr5 (656-698)||(25928908-25928950)
chr5 (653-690)||(9699919-9699956)
chr5 (653-690)||(10515352-10515389)
chr5 (655-696)||(24498577-24498618)
chr5 (653-698)||(26034633-26034678)
chr5 (653-694)||(28736893-28736934)
chr5 (653-698)||(40056615-40056660)
[»] scaffold0095 (1 HSPs)
scaffold0095 (653-690)||(148-185)
[»] scaffold0088 (1 HSPs)
scaffold0088 (653-690)||(55509-55546)
[»] scaffold0021 (1 HSPs)
scaffold0021 (655-696)||(161134-161175)


Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 19 - 364
Target Start/End: Complemental strand, 31805882 - 31805537
Alignment:
Q  19 aagcttcagtagatagagtgcttttcaacagacttactacgattaaagttaatccataaagtgcaacaattatactttgtttaagagttgtgcaatattt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31805882 aagcttcagtagatagagtgcttttcaacagacttactacgattaaagttaatccataaagtgcaacaattatactttgtttaagagttgtgcaatattt 31805783  T
Q  119 tgtttaattcacatatggcgaccgcaatccataacgtaatatccgtaacaatcgaaattgcaaaatcctatatgcggttgtcgccgttgtttaaaacctt 218  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31805782 tgtttaattcacatatggcgaccgcaatctataacgtaatatccgtaacaatcgaaattgcaaaatcctatatgcggttgtcgccgttgtttaaaacctt 31805683  T
Q  219 aggttaatatggttgatcctgataagagaaatgctacaaatgaattttacattggtgatgtgaggtttatcgagcttgcttgtgcacaaaataaatgtga 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31805682 aggttaatatggttgatcctgataagagaaatgctacaaatgaattttacattggtgatgtgaggtttatcgagcttgcttgtgcacaaaataaatgtga 31805583  T
Q  319 aaaaggaggaaaattaagatgtccatgcatgcaaaagtttatgagt 364  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  31805582 aaaaggaggaaaattaagatgtccatgcatgcaaaagtttatgagt 31805537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 653 - 696
Target Start/End: Complemental strand, 1692780 - 1692737
Alignment:
Q  653 tttgtccttgtgagcttaactcagttgatatgaacaatacataa 696  Q
    ||||||||||||||||||||||| |||||||||||||| |||||    
T  1692780 tttgtccttgtgagcttaactcaattgatatgaacaatgcataa 1692737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 653 - 698
Target Start/End: Complemental strand, 8761634 - 8761589
Alignment:
Q  653 tttgtccttgtgagcttaactcagttgatatgaacaatacataata 698  Q
    |||||||| |||||||||||||||||| |||| |||||||||||||    
T  8761634 tttgtcctcgtgagcttaactcagttggtatggacaatacataata 8761589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 653 - 698
Target Start/End: Complemental strand, 37119328 - 37119283
Alignment:
Q  653 tttgtccttgtgagcttaactcagttgatatgaacaatacataata 698  Q
    |||||| ||||||| ||||||||||||||||||||||| |||||||    
T  37119328 tttgtcattgtgagtttaactcagttgatatgaacaatgcataata 37119283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 660 - 698
Target Start/End: Original strand, 19159939 - 19159977
Alignment:
Q  660 ttgtgagcttaactcagttgatatgaacaatacataata 698  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  19159939 ttgtaagcttaactcagttgatatgaacaatgcataata 19159977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 661 - 698
Target Start/End: Original strand, 9718393 - 9718430
Alignment:
Q  661 tgtgagcttaactcagttgatatgaacaatacataata 698  Q
    |||||||||||||||||||||| ||||||| |||||||    
T  9718393 tgtgagcttaactcagttgataagaacaatgcataata 9718430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 657 - 698
Target Start/End: Complemental strand, 10977125 - 10977084
Alignment:
Q  657 tccttgtgagcttaactcagttgatatgaacaatacataata 698  Q
    |||| ||||||||||||| ||||||||||| |||||||||||    
T  10977125 tcctcgtgagcttaactcggttgatatgaaaaatacataata 10977084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 657 - 698
Target Start/End: Original strand, 19967413 - 19967454
Alignment:
Q  657 tccttgtgagcttaactcagttgatatgaacaatacataata 698  Q
    |||| ||||||||| ||||||||||||||||||| |||||||    
T  19967413 tcctcgtgagcttagctcagttgatatgaacaatgcataata 19967454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 654 - 698
Target Start/End: Original strand, 40795369 - 40795413
Alignment:
Q  654 ttgtccttgtgagcttaactcagttgatatgaacaatacataata 698  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||    
T  40795369 ttgtcattgtgagcttaactcagttggtatgaacaatacataata 40795413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 653 - 696
Target Start/End: Original strand, 39433401 - 39433444
Alignment:
Q  653 tttgtccttgtgagcttaactcagttgatatgaacaatacataa 696  Q
    |||||||| ||||||||| |||||||||||||||||||||||||    
T  39433401 tttgtcctcgtgagcttagctcagttgatatgaacaatacataa 39433444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 656 - 696
Target Start/End: Complemental strand, 2554279 - 2554239
Alignment:
Q  656 gtccttgtgagcttaactcagttgatatgaacaatacataa 696  Q
    ||||||||||||||| ||||||||||||| |||||||||||    
T  2554279 gtccttgtgagcttagctcagttgatatggacaatacataa 2554239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 659 - 698
Target Start/End: Original strand, 24195246 - 24195285
Alignment:
Q  659 cttgtgagcttaactcagttgatatgaacaatacataata 698  Q
    ||||||| |||| |||||||||||||||||||||||||||    
T  24195246 cttgtgaacttagctcagttgatatgaacaatacataata 24195285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 656 - 698
Target Start/End: Complemental strand, 17062406 - 17062364
Alignment:
Q  656 gtccttgtgagcttaactcagttgatatgaacaatacataata 698  Q
    ||||| ||||||||||||||||||||||  |||||||||||||    
T  17062406 gtcctcgtgagcttaactcagttgatatagacaatacataata 17062364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 656 - 698
Target Start/End: Original strand, 17585952 - 17585994
Alignment:
Q  656 gtccttgtgagcttaactcagttgatatgaacaatacataata 698  Q
    ||||| ||||||||||||||||||||||  |||||||||||||    
T  17585952 gtcctcgtgagcttaactcagttgatatagacaatacataata 17585994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 656 - 698
Target Start/End: Complemental strand, 18148869 - 18148827
Alignment:
Q  656 gtccttgtgagcttaactcagttgatatgaacaatacataata 698  Q
    ||||| ||||||||||||||||| ||||||||||| |||||||    
T  18148869 gtcctcgtgagcttaactcagttaatatgaacaatgcataata 18148827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 653 - 690
Target Start/End: Complemental strand, 12251627 - 12251590
Alignment:
Q  653 tttgtccttgtgagcttaactcagttgatatgaacaat 690  Q
    |||||||| ||||||||||||||||||||| |||||||    
T  12251627 tttgtcctcgtgagcttaactcagttgataggaacaat 12251590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 653 - 690
Target Start/End: Original strand, 39443581 - 39443618
Alignment:
Q  653 tttgtccttgtgagcttaactcagttgatatgaacaat 690  Q
    |||||||| ||||||||||||||||||||| |||||||    
T  39443581 tttgtcctcgtgagcttaactcagttgataggaacaat 39443618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 655 - 699
Target Start/End: Complemental strand, 25527906 - 25527862
Alignment:
Q  655 tgtccttgtgagcttaactcagttgatatgaacaatacataatac 699  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||    
T  25527906 tgtccttgtgagcttaactcagttggtatgaacaattcataatac 25527862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 653 - 690
Target Start/End: Complemental strand, 22762433 - 22762396
Alignment:
Q  653 tttgtccttgtgagcttaactcagttgatatgaacaat 690  Q
    |||||||||||||||||||||||||||||| |||||||    
T  22762433 tttgtccttgtgagcttaactcagttgataggaacaat 22762396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 653 - 696
Target Start/End: Complemental strand, 36170160 - 36170117
Alignment:
Q  653 tttgtccttgtgagcttaactcagttgatatgaacaatacataa 696  Q
    |||||||| |||||||||||||| |||||||||||||| |||||    
T  36170160 tttgtcctcgtgagcttaactcaattgatatgaacaatgcataa 36170117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 663 - 698
Target Start/End: Original strand, 42784958 - 42784993
Alignment:
Q  663 tgagcttaactcagttgatatgaacaatacataata 698  Q
    |||||||||||||||||||||| |||||||||||||    
T  42784958 tgagcttaactcagttgatatggacaatacataata 42784993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 662 - 727
Target Start/End: Original strand, 7651186 - 7651254
Alignment:
Q  662 gtgagcttaactcagttgatatgaacaatacataatac---taagattcggggttcaaacgccgaccac 727  Q
    ||||||||||||||||||||| | ||||| |||| ||    |||| |||||||||||||||||||||||    
T  7651186 gtgagcttaactcagttgatagggacaatgcatagtatatataaggttcggggttcaaacgccgaccac 7651254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 656 - 698
Target Start/End: Complemental strand, 38131026 - 38130984
Alignment:
Q  656 gtccttgtgagcttaactcagttgatatgaacaatacataata 698  Q
    |||||||||||||||||||||||| |||| ||||| |||||||    
T  38131026 gtccttgtgagcttaactcagttggtatggacaatgcataata 38130984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 656 - 698
Target Start/End: Complemental strand, 38559963 - 38559921
Alignment:
Q  656 gtccttgtgagcttaactcagttgatatgaacaatacataata 698  Q
    |||||||||||| ||||||||||| |||||||||| |||||||    
T  38559963 gtccttgtgagcgtaactcagttggtatgaacaatgcataata 38559921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 652 - 698
Target Start/End: Original strand, 53996289 - 53996335
Alignment:
Q  652 gtttgtccttgtgagcttaactcagttgatatgaacaatacataata 698  Q
    ||||||||||||||||||| |||||||| |||| ||||| |||||||    
T  53996289 gtttgtccttgtgagcttagctcagttggtatggacaatgcataata 53996335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 653 - 698
Target Start/End: Complemental strand, 10843851 - 10843806
Alignment:
Q  653 tttgtccttgtgagcttaactcagttgatatgaacaatacataata 698  Q
    ||||| || |||||||||||||||||| |||||| |||||||||||    
T  10843851 tttgttctcgtgagcttaactcagttggtatgaataatacataata 10843806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 653 - 698
Target Start/End: Original strand, 19468442 - 19468487
Alignment:
Q  653 tttgtccttgtgagcttaactcagttgatatgaacaatacataata 698  Q
    |||||| |||||||||||||||||||| |||| ||||| |||||||    
T  19468442 tttgtctttgtgagcttaactcagttggtatggacaatgcataata 19468487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 653 - 698
Target Start/End: Original strand, 23332641 - 23332686
Alignment:
Q  653 tttgtccttgtgagcttaactcagttgatatgaacaatacataata 698  Q
    |||||||| |||| ||||||| |||||||||||||||| |||||||    
T  23332641 tttgtcctcgtgaacttaacttagttgatatgaacaatgcataata 23332686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 653 - 698
Target Start/End: Complemental strand, 36354589 - 36354544
Alignment:
Q  653 tttgtccttgtgagcttaactcagttgatatgaacaatacataata 698  Q
    ||||| |||||||||||| ||||||||||||||| |||| ||||||    
T  36354589 tttgttcttgtgagcttagctcagttgatatgaaaaatatataata 36354544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 661 - 698
Target Start/End: Complemental strand, 38573635 - 38573598
Alignment:
Q  661 tgtgagcttaactcagttgatatgaacaatacataata 698  Q
    |||||||||||||||||||||| ||||||| |||||||    
T  38573635 tgtgagcttaactcagttgataagaacaatgcataata 38573598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 654 - 699
Target Start/End: Original strand, 43011314 - 43011359
Alignment:
Q  654 ttgtccttgtgagcttaactcagttgatatgaacaatacataatac 699  Q
    ||||||| |||||| |||||||||||||||  ||||||||||||||    
T  43011314 ttgtcctcgtgagcctaactcagttgatatagacaatacataatac 43011359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 654 - 690
Target Start/End: Complemental strand, 4770697 - 4770661
Alignment:
Q  654 ttgtccttgtgagcttaactcagttgatatgaacaat 690  Q
    |||||||||||||||||||||||||||||||||||||    
T  4770697 ttgtccttgtgagcttaactcagttgatatgaacaat 4770661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 656 - 698
Target Start/End: Original strand, 12213987 - 12214029
Alignment:
Q  656 gtccttgtgagcttaactcagttgatatgaacaatacataata 698  Q
    ||||||||||||||| ||||||||||| |||||||||||||||    
T  12213987 gtccttgtgagcttagctcagttgataggaacaatacataata 12214029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 654 - 696
Target Start/End: Original strand, 41032923 - 41032965
Alignment:
Q  654 ttgtccttgtgagcttaactcagttgatatgaacaatacataa 696  Q
    ||||||| ||||||||||||||||||||||||||||| |||||    
T  41032923 ttgtcctcgtgagcttaactcagttgatatgaacaatgcataa 41032965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 659 - 696
Target Start/End: Original strand, 11410624 - 11410661
Alignment:
Q  659 cttgtgagcttaactcagttgatatgaacaatacataa 696  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  11410624 cttgtgagcttaactcagttggtatgaacaatacataa 11410661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 657 - 698
Target Start/End: Complemental strand, 32209904 - 32209863
Alignment:
Q  657 tccttgtgagcttaactcagttgatatgaacaatacataata 698  Q
    |||||||||||||| ||||||||||| |||||||||||||||    
T  32209904 tccttgtgagcttacctcagttgataggaacaatacataata 32209863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 654 - 698
Target Start/End: Complemental strand, 28832240 - 28832196
Alignment:
Q  654 ttgtccttgtgagcttaactcagttgatatgaacaatacataata 698  Q
    |||| ||||||||||||||||||||| |||||||||| |||||||    
T  28832240 ttgttcttgtgagcttaactcagttggtatgaacaatgcataata 28832196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 655 - 690
Target Start/End: Complemental strand, 5553069 - 5553034
Alignment:
Q  655 tgtccttgtgagcttaactcagttgatatgaacaat 690  Q
    |||||||||| |||||||||||||||||||||||||    
T  5553069 tgtccttgtgggcttaactcagttgatatgaacaat 5553034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 659 - 698
Target Start/End: Original strand, 10841897 - 10841936
Alignment:
Q  659 cttgtgagcttaactcagttgatatgaacaatacataata 698  Q
    |||||||||||||||||||||||||| ||||| |||||||    
T  10841897 cttgtgagcttaactcagttgatatggacaatgcataata 10841936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 659 - 690
Target Start/End: Complemental strand, 15382883 - 15382852
Alignment:
Q  659 cttgtgagcttaactcagttgatatgaacaat 690  Q
    ||||||||||||||||||||||||||||||||    
T  15382883 cttgtgagcttaactcagttgatatgaacaat 15382852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 653 - 696
Target Start/End: Complemental strand, 21965962 - 21965919
Alignment:
Q  653 tttgtccttgtgagcttaactcagttgatatgaacaatacataa 696  Q
    |||||||||||||||||| ||||||||||||||| ||| |||||    
T  21965962 tttgtccttgtgagcttagctcagttgatatgaataatgcataa 21965919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 655 - 698
Target Start/End: Original strand, 35690205 - 35690248
Alignment:
Q  655 tgtccttgtgagcttaactcagttgatatgaacaatacataata 698  Q
    ||||||||||||||||||||||||| || ||| |||||||||||    
T  35690205 tgtccttgtgagcttaactcagttggtaggaataatacataata 35690248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 662 - 696
Target Start/End: Original strand, 7550896 - 7550930
Alignment:
Q  662 gtgagcttaactcagttgatatgaacaatacataa 696  Q
    ||||||||||||||||||||||||||||| |||||    
T  7550896 gtgagcttaactcagttgatatgaacaatgcataa 7550930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 653 - 699
Target Start/End: Complemental strand, 26329192 - 26329146
Alignment:
Q  653 tttgtccttgtgagcttaactcagttgatatgaacaatacataatac 699  Q
    ||||||||||| |||||| ||||||||||| ||||||| ||||||||    
T  26329192 tttgtccttgttagcttagctcagttgataagaacaatgcataatac 26329146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 656 - 698
Target Start/End: Original strand, 27853349 - 27853391
Alignment:
Q  656 gtccttgtgagcttaactcagttgatatgaacaatacataata 698  Q
    ||||| |||||||||||||||||| |||||||||| |||||||    
T  27853349 gtcctcgtgagcttaactcagttggtatgaacaatgcataata 27853391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 656 - 698
Target Start/End: Complemental strand, 51067961 - 51067919
Alignment:
Q  656 gtccttgtgagcttaactcagttgatatgaacaatacataata 698  Q
    |||||||||||||||||||||||| || ||| |||||||||||    
T  51067961 gtccttgtgagcttaactcagttggtaagaataatacataata 51067919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 653 - 690
Target Start/End: Complemental strand, 6423832 - 6423795
Alignment:
Q  653 tttgtccttgtgagcttaactcagttgatatgaacaat 690  Q
    |||||||| |||||||||||||||||| ||||||||||    
T  6423832 tttgtcctcgtgagcttaactcagttggtatgaacaat 6423795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 665 - 698
Target Start/End: Original strand, 17339218 - 17339251
Alignment:
Q  665 agcttaactcagttgatatgaacaatacataata 698  Q
    ||||||||||||||| ||||||||||||||||||    
T  17339218 agcttaactcagttggtatgaacaatacataata 17339251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 653 - 698
Target Start/End: Original strand, 29935974 - 29936019
Alignment:
Q  653 tttgtccttgtgagcttaactcagttgatatgaacaatacataata 698  Q
    |||||||||||||| |||||||||||| |||| ||||| |||||||    
T  29935974 tttgtccttgtgagtttaactcagttggtatggacaatgcataata 29936019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 653 - 698
Target Start/End: Complemental strand, 44366018 - 44365973
Alignment:
Q  653 tttgtccttgtgagcttaactcagttgatatgaacaatacataata 698  Q
    |||||||| ||||| |||||||||||| || |||||||||||||||    
T  44366018 tttgtcctcgtgagtttaactcagttggtaggaacaatacataata 44365973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000008; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 657 - 696
Target Start/End: Original strand, 2450575 - 2450614
Alignment:
Q  657 tccttgtgagcttaactcagttgatatgaacaatacataa 696  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  2450575 tccttgtgagcttaactcagttggtatgaacaatacataa 2450614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 654 - 698
Target Start/End: Complemental strand, 3672621 - 3672577
Alignment:
Q  654 ttgtccttgtgagcttaactcagttgatatgaacaatacataata 698  Q
    ||||||||||||| ||| ||||||||||||| |||||||||||||    
T  3672621 ttgtccttgtgagtttagctcagttgatatggacaatacataata 3672577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 654 - 698
Target Start/End: Complemental strand, 43539173 - 43539129
Alignment:
Q  654 ttgtccttgtgagcttaactcagttgatatgaacaatacataata 698  Q
    ||||||||||||||||| ||||||||||| ||||||| |||||||    
T  43539173 ttgtccttgtgagcttagctcagttgataggaacaatgcataata 43539129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 654 - 696
Target Start/End: Complemental strand, 27993098 - 27993056
Alignment:
Q  654 ttgtccttgtgagcttaactcagttgatatgaacaatacataa 696  Q
    ||||||| |||||||||||||||||| |||||||||| |||||    
T  27993098 ttgtcctcgtgagcttaactcagttggtatgaacaatgcataa 27993056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 660 - 698
Target Start/End: Complemental strand, 34722084 - 34722046
Alignment:
Q  660 ttgtgagcttaactcagttgatatgaacaatacataata 698  Q
    |||||||||||||||||||| |||||||||| |||||||    
T  34722084 ttgtgagcttaactcagttggtatgaacaatgcataata 34722046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 653 - 698
Target Start/End: Complemental strand, 28200455 - 28200410
Alignment:
Q  653 tttgtccttgtgagcttaactcagttgatatgaacaatacataata 698  Q
    |||||| | |||||||||||||||||| || |||||||||||||||    
T  28200455 tttgtcatcgtgagcttaactcagttggtaggaacaatacataata 28200410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 653 - 690
Target Start/End: Complemental strand, 38435996 - 38435959
Alignment:
Q  653 tttgtccttgtgagcttaactcagttgatatgaacaat 690  Q
    |||||||| ||||||||||||||||||||| |||||||    
T  38435996 tttgtcctcgtgagcttaactcagttgataggaacaat 38435959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 653 - 690
Target Start/End: Original strand, 42995267 - 42995304
Alignment:
Q  653 tttgtccttgtgagcttaactcagttgatatgaacaat 690  Q
    |||||||| ||||||||||||||||||||| |||||||    
T  42995267 tttgtcctcgtgagcttaactcagttgataggaacaat 42995304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000008; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 651 - 698
Target Start/End: Complemental strand, 19479549 - 19479502
Alignment:
Q  651 agtttgtccttgtgagcttaactcagttgatatgaacaatacataata 698  Q
    |||||||||||||||||||| ||||||| ||||||||||| |||||||    
T  19479549 agtttgtccttgtgagcttagctcagttaatatgaacaatgcataata 19479502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 655 - 698
Target Start/End: Complemental strand, 24837541 - 24837498
Alignment:
Q  655 tgtccttgtgagcttaactcagttgatatgaacaatacataata 698  Q
    |||||| |||||||||||| ||||||||||||||||||||||||    
T  24837541 tgtcctcgtgagcttaacttagttgatatgaacaatacataata 24837498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 653 - 690
Target Start/End: Original strand, 44724374 - 44724411
Alignment:
Q  653 tttgtccttgtgagcttaactcagttgatatgaacaat 690  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  44724374 tttgtccttgtgagcttaactcagttggtatgaacaat 44724411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 655 - 695
Target Start/End: Original strand, 39489599 - 39489639
Alignment:
Q  655 tgtccttgtgagcttaactcagttgatatgaacaatacata 695  Q
    ||||||||||||||||| |||||||||| ||||||||||||    
T  39489599 tgtccttgtgagcttaattcagttgataggaacaatacata 39489639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 654 - 696
Target Start/End: Complemental strand, 35021536 - 35021494
Alignment:
Q  654 ttgtccttgtgagcttaactcagttgatatgaacaatacataa 696  Q
    ||||||| ||||||||| ||||||||||||| |||||||||||    
T  35021536 ttgtcctcgtgagcttagctcagttgatatggacaatacataa 35021494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 657 - 698
Target Start/End: Complemental strand, 11949729 - 11949688
Alignment:
Q  657 tccttgtgagcttaactcagttgatatgaacaatacataata 698  Q
    |||| ||||||||| ||||||||||| |||||||||||||||    
T  11949729 tcctcgtgagcttagctcagttgataagaacaatacataata 11949688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 653 - 690
Target Start/End: Complemental strand, 26871756 - 26871719
Alignment:
Q  653 tttgtccttgtgagcttaactcagttgatatgaacaat 690  Q
    |||||||| ||||||||||||||||||||| |||||||    
T  26871756 tttgtcctcgtgagcttaactcagttgataggaacaat 26871719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 656 - 698
Target Start/End: Original strand, 13496110 - 13496152
Alignment:
Q  656 gtccttgtgagcttaactcagttgatatgaacaatacataata 698  Q
    ||||| ||||||||||||||||||||||||||||| |||||||    
T  13496110 gtcctcgtgagcttaactcagttgatatgaacaatgcataata 13496152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 655 - 727
Target Start/End: Original strand, 2445292 - 2445367
Alignment:
Q  655 tgtccttgtgagcttaactcagttgatatgaacaatacataata---ctaagattcggggttcaaacgccgaccac 727  Q
    |||||| || |||||||||||||||||||||||||| |||||||     |||||||||||||| ||| ||||||||    
T  2445292 tgtcctcgtaagcttaactcagttgatatgaacaatgcataatatatacaagattcggggttcgaaccccgaccac 2445367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 656 - 727
Target Start/End: Complemental strand, 9311997 - 9311923
Alignment:
Q  656 gtccttgtgagcttaactcagttgatatgaacaatacataata---ctaagattcggggttcaaacgccgaccac 727  Q
    ||||| |||||||||||||||||| |||||| |||||||||||    ||||||| | ||||||||| ||||||||    
T  9311997 gtcctcgtgagcttaactcagttggtatgaataatacataatatatgtaagatttgaggttcaaaccccgaccac 9311923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 653 - 696
Target Start/End: Original strand, 18313924 - 18313967
Alignment:
Q  653 tttgtccttgtgagcttaactcagttgatatgaacaatacataa 696  Q
    |||||||| ||||||||||||||||||||| ||||||| |||||    
T  18313924 tttgtcctcgtgagcttaactcagttgataggaacaatgcataa 18313967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 656 - 690
Target Start/End: Complemental strand, 21857118 - 21857084
Alignment:
Q  656 gtccttgtgagcttaactcagttgatatgaacaat 690  Q
    |||||||||||||||||||||||| ||||||||||    
T  21857118 gtccttgtgagcttaactcagttggtatgaacaat 21857084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 657 - 698
Target Start/End: Complemental strand, 4379551 - 4379510
Alignment:
Q  657 tccttgtgagcttaactcagttgatatgaacaatacataata 698  Q
    |||| |||||||||||||||||| || |||||||||||||||    
T  4379551 tcctcgtgagcttaactcagttggtaggaacaatacataata 4379510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 653 - 698
Target Start/End: Complemental strand, 12700491 - 12700446
Alignment:
Q  653 tttgtccttgtgagcttaactcagttgatatgaacaatacataata 698  Q
    ||||||||||||||||||  ||||||| |||||||||| |||||||    
T  12700491 tttgtccttgtgagcttagttcagttggtatgaacaatgcataata 12700446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 655 - 727
Target Start/End: Complemental strand, 24623385 - 24623310
Alignment:
Q  655 tgtccttgtgagcttaactcagttgatatgaacaatacataata---ctaagattcggggttcaaacgccgaccac 727  Q
    |||| ||||||| ||| ||||||||||||| ||||| |||||||    |||| |||||||||||||| ||||||||    
T  24623385 tgtctttgtgagtttagctcagttgatatggacaatgcataatatatgtaaggttcggggttcaaaccccgaccac 24623310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 657 - 698
Target Start/End: Original strand, 28951394 - 28951435
Alignment:
Q  657 tccttgtgagcttaactcagttgatatgaacaatacataata 698  Q
    |||| |||||||||||||||||| |||||||||| |||||||    
T  28951394 tcctcgtgagcttaactcagttggtatgaacaatgcataata 28951435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 648 - 698
Target Start/End: Complemental strand, 42608940 - 42608890
Alignment:
Q  648 aaaagtttgtccttgtgagcttaactcagttgatatgaacaatacataata 698  Q
    |||| ||| ||||||| |||||||||||||||||||||||||| |||||||    
T  42608940 aaaaatttatccttgtaagcttaactcagttgatatgaacaatgcataata 42608890  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 656 - 697
Target Start/End: Complemental strand, 33369480 - 33369439
Alignment:
Q  656 gtccttgtgagcttaactcagttgatatgaacaatacataat 697  Q
    ||||| |||||||||||||||||| |||||||||||||||||    
T  33369480 gtcctcgtgagcttaactcagttggtatgaacaatacataat 33369439  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 662 - 698
Target Start/End: Original strand, 13864344 - 13864380
Alignment:
Q  662 gtgagcttaactcagttgatatgaacaatacataata 698  Q
    |||||||||||||||||| ||||||||||||||||||    
T  13864344 gtgagcttaactcagttggtatgaacaatacataata 13864380  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 656 - 698
Target Start/End: Complemental strand, 18589934 - 18589892
Alignment:
Q  656 gtccttgtgagcttaactcagttgatatgaacaatacataata 698  Q
    ||||| |||||||||||||||||| |||||||||| |||||||    
T  18589934 gtcctcgtgagcttaactcagttggtatgaacaatgcataata 18589892  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 656 - 698
Target Start/End: Original strand, 22585646 - 22585688
Alignment:
Q  656 gtccttgtgagcttaactcagttgatatgaacaatacataata 698  Q
    ||||| ||| ||||||||||||||||||||||||| |||||||    
T  22585646 gtcctcgtgggcttaactcagttgatatgaacaatgcataata 22585688  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 656 - 698
Target Start/End: Original strand, 25928908 - 25928950
Alignment:
Q  656 gtccttgtgagcttaactcagttgatatgaacaatacataata 698  Q
    ||||| |||||||||||||| |||||||| |||||||||||||    
T  25928908 gtcctcgtgagcttaactcaattgatatggacaatacataata 25928950  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 653 - 690
Target Start/End: Original strand, 9699919 - 9699956
Alignment:
Q  653 tttgtccttgtgagcttaactcagttgatatgaacaat 690  Q
    |||||||| ||||||||||||||||||||| |||||||    
T  9699919 tttgtcctcgtgagcttaactcagttgataggaacaat 9699956  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 653 - 690
Target Start/End: Original strand, 10515352 - 10515389
Alignment:
Q  653 tttgtccttgtgagcttaactcagttgatatgaacaat 690  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  10515352 tttgtccttgtgagcttaacttagttgatatggacaat 10515389  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 655 - 696
Target Start/End: Original strand, 24498577 - 24498618
Alignment:
Q  655 tgtccttgtgagcttaactcagttgatatgaacaatacataa 696  Q
    |||||| ||||||||||||||||||||||||| ||| |||||    
T  24498577 tgtcctcgtgagcttaactcagttgatatgaataatgcataa 24498618  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 653 - 698
Target Start/End: Complemental strand, 26034678 - 26034633
Alignment:
Q  653 tttgtccttgtgagcttaactcagttgatatgaacaatacataata 698  Q
    ||||| || |||||||||||||||||| |||||||||| |||||||    
T  26034678 tttgttctcgtgagcttaactcagttggtatgaacaatgcataata 26034633  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 653 - 694
Target Start/End: Original strand, 28736893 - 28736934
Alignment:
Q  653 tttgtccttgtgagcttaactcagttgatatgaacaatacat 694  Q
    |||||||| |||||||||||||||||| |||| |||||||||    
T  28736893 tttgtcctcgtgagcttaactcagttgttatggacaatacat 28736934  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 653 - 698
Target Start/End: Complemental strand, 40056660 - 40056615
Alignment:
Q  653 tttgtccttgtgagcttaactcagttgatatgaacaatacataata 698  Q
    ||||||||||||||||||||||||||| || | ||||| |||||||    
T  40056660 tttgtccttgtgagcttaactcagttggtaaggacaatgcataata 40056615  T

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Target: scaffold0095 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 653 - 690
Target Start/End: Original strand, 148 - 185
Alignment:
Q  653 tttgtccttgtgagcttaactcagttgatatgaacaat 690  Q
    |||||||| ||||||||||||||||||||| |||||||    
T  148 tttgtcctcgtgagcttaactcagttgataggaacaat 185  T

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Target: scaffold0088 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 653 - 690
Target Start/End: Complemental strand, 55546 - 55509
Alignment:
Q  653 tttgtccttgtgagcttaactcagttgatatgaacaat 690  Q
    ||||||||||||||||| |||||||||||| |||||||    
T  55546 tttgtccttgtgagctttactcagttgataggaacaat 55509  T

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Target: scaffold0021 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 655 - 696
Target Start/End: Original strand, 161134 - 161175
Alignment:
Q  655 tgtccttgtgagcttaactcagttgatatgaacaatacataa 696  Q
    ||||||||||||||||||||||||| |||| ||||| |||||    
T  161134 tgtccttgtgagcttaactcagttggtatggacaatgcataa 161175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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