View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16991_high_20 (Length: 445)
Name: NF16991_high_20
Description: NF16991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16991_high_20 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 12 - 445
Target Start/End: Complemental strand, 35837941 - 35837509
Alignment:
| Q |
12 |
aaaggggtttatcagtgaggcattgcaaaattcagatctgataggtgctctacctagctttcttctattcaaagggaaagttgggattaattatgaaagc |
111 |
Q |
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| T |
35837941 |
aaaggggtttatcagtgaggcattgcaaaattcagatctgataggtgctctacctagctttcttctattcaaagggaaagttgggattaattatgaaagc |
35837842 |
T |
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| Q |
112 |
aaactattaatacatataattttattttacaaaagctaataatgtataaaaagtggaaggttttaacaaataattattaaagaagagaaaagaaacatcc |
211 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35837841 |
aaactattaatacatataattttattttacaaaaactaataatgtataaaaagtggaaggttttaacaaataattattaaagaagagaaaagaaacatcc |
35837742 |
T |
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| Q |
212 |
tttcaccattagccatagaaaagcctctaatgactccaaatgaacagaaaaatgtataaaaactctccaaagaacataaaaaatatgcatggtaatgata |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
35837741 |
tttcaccattagccatagaaaagcctctaatgactccaaatgaacagaaaaatgtataaaaactctccaaagaacataaaaaatatgcatggaaatgata |
35837642 |
T |
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| Q |
312 |
aagaagacatagaccnnnnnnnntgaaataaacttgtcacagaaattaattattatacagaacagaacaagattccaaattttaatataaagaataaaaa |
411 |
Q |
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||||||||||||||| ||||||||||||| |||||||||| ||||||| |||||||| || |||||| |||||||||||||||| |||||||| |
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| T |
35837641 |
aagaagacatagaccaaaaacattgaaataaacttgccacagaaattcattattaaacagaaca-aaaaagattacaaattttaatataaaaaataaaaa |
35837543 |
T |
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| Q |
412 |
accagatctagaattctgagaaaagaaacattct |
445 |
Q |
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||||||||||| |||||||||||||||||||||| |
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| T |
35837542 |
accagatctagcattctgagaaaagaaacattct |
35837509 |
T |
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