View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16991_high_22 (Length: 426)
Name: NF16991_high_22
Description: NF16991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16991_high_22 |
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Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 14 - 417
Target Start/End: Original strand, 52383781 - 52384181
Alignment:
| Q |
14 |
cttgtgcaactattttcttcaagcagtctgtagaatcatgcatggagccaacagagattcagtttagcttgttgaactcaattcgatactaacttataat |
113 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52383781 |
cttgtgcaactattttcttcaagcagtctgtagaatcgtgcatggagccaacagagattcagtttagcttgttgaactcaattcgatactaacttataat |
52383880 |
T |
|
| Q |
114 |
gtatatcatctattttcgacatgaatctcattttgaattctgattcattatgatctattctgaccaacaactatctagacttaaagcagtcgatcacnnn |
213 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52383881 |
gtatatc---tattttcgacatgaatctcattttgaattctgattcattatgatctattctgaccaacaactatctagacttaaagcagtcgatcacttt |
52383977 |
T |
|
| Q |
214 |
nnnnngttcaaatttgtacgacaatataaccaactacttttcttttgtcatttgtttatctcagcaacttattggtaatgtatcttacgattcacaattt |
313 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52383978 |
tttttgttcaaatttgtaggacaatataaccaactacttttcttttgtcatttgtttatctcagcaacttattggtaatgtatcttacgattcacaattt |
52384077 |
T |
|
| Q |
314 |
gaaaaataagtcattcctaatgactaatagaattttgatttgataaccatggtcgtgtccacataataaattctatcttgaaaactagtacacttaatta |
413 |
Q |
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| T |
52384078 |
gaaaaataagtctttcctgatgactaatagaattttgatttgataaccatggtcgtgtccacataataaattctatcttgaaaactagtacacttaatta |
52384177 |
T |
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| Q |
414 |
tttt |
417 |
Q |
| |
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|||| |
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| T |
52384178 |
tttt |
52384181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 171
Target Start/End: Original strand, 25093409 - 25093449
Alignment:
| Q |
131 |
gacatgaatctcattttgaattctgattcattatgatctat |
171 |
Q |
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| T |
25093409 |
gacatgaatctcatcttgaatgttgattcattatgatctat |
25093449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 167
Target Start/End: Complemental strand, 35590629 - 35590583
Alignment:
| Q |
121 |
atctattttcgacatgaatctcattttgaattctgattcattatgat |
167 |
Q |
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||||||||| |||| || |||||| |||||||||||||||||||||| |
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| T |
35590629 |
atctatttttgacacgattctcatcttgaattctgattcattatgat |
35590583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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