View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16991_high_25 (Length: 385)
Name: NF16991_high_25
Description: NF16991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16991_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 375
Target Start/End: Original strand, 1239034 - 1239394
Alignment:
| Q |
18 |
ccaataataaagagataatgattatgttcgaattttacgcgtttacatagtttagaaacaaattgtcattttagtccttgaatgtttgaaacaatgacac |
117 |
Q |
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| T |
1239034 |
ccaataataaagagataatgattatgttcgaattttacgcgtttacatagtttagaaacaaattgtcattttagttcttgaatgtctgaaacaatgacac |
1239133 |
T |
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| Q |
118 |
tataatcccggcatgtatttaaaattgcaaataagcatactgaatgtaannnnnnngttagtaatttttatgcactaattaagctgactaacaaaagata |
217 |
Q |
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| T |
1239134 |
tataatcccggcatgtatttaaaattgcaaataagcatactgaatgtattttttttgttagtaattttcatgcactaattaagctgactaacaaaagaca |
1239233 |
T |
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| Q |
218 |
ttagacgatcaaaataactaataaagcacgcatctgaggaccaaactcaccggtaaaacaaacatttagaaatgtttttgtaatgttgatatatt---nn |
314 |
Q |
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||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1239234 |
ttagatgatcaaaataactaataaagcacacatccgaggaccaaactcaccggtaaaacaaacatttagaaatgtttttgtaatgttgatatatttaaaa |
1239333 |
T |
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| Q |
315 |
nnnnnnnnctatataactaagacgttcaaagacgaaaatgaccatttactcgatttttctt |
375 |
Q |
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| T |
1239334 |
aaaaaaaactatataactaagacgttcaaagacgaaaatgaccatttactcgatttttctt |
1239394 |
T |
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