View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16991_high_27 (Length: 375)
Name: NF16991_high_27
Description: NF16991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16991_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 40 - 362
Target Start/End: Complemental strand, 45447665 - 45447343
Alignment:
| Q |
40 |
cttttttatgtttatatttattgtttttcatgtccttggattaccaaataattctcgtattcaactnnnnnnnngcagttacgagaaggnnnnnnnggca |
139 |
Q |
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| T |
45447665 |
cttttttatatttatatttattgtttttcatatccttggattaccaaataattctcgtattcaactaaaaaaaagcagttacgagaaggaaaaaaaggca |
45447566 |
T |
|
| Q |
140 |
gttatgagaatcgaactcgtgaccagatactcaactgcaaaaaaccttaccatttcgctgtgatagacatataacgtgagccttgctctaacctggctaa |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
45447565 |
gttatgagaatcgaactcgtgaccagatactcaactgcaaaaaaccttaccatttcgctgtgatagacatataacgttagccttgctctaacctgcctaa |
45447466 |
T |
|
| Q |
240 |
gagtggccacgactgttgaaaaaccctaactcccttcccgcgcctttctcttcaatcttctccgccgtctctctccccagaaaatggtttcacagtgggg |
339 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45447465 |
gagtggccacgactgctgaaaaaccctaactcccttcccgcgcctttctcttcaatcttctccgccgtctctctccccagaaaatggtttcacagtgggg |
45447366 |
T |
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| Q |
340 |
aatcaagttcgccgttcatctca |
362 |
Q |
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||||||||||||||||||||||| |
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| T |
45447365 |
aatcaagttcgccgttcatctca |
45447343 |
T |
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