View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16991_high_30 (Length: 362)
Name: NF16991_high_30
Description: NF16991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16991_high_30 |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 32185054 - 32185403
Alignment:
| Q |
1 |
gttttgaatatctctcctcacaaacgataatagttctgtaatataagtgcactttgaaatataagtgctacattatctcatactccagcacattgaaata |
100 |
Q |
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| T |
32185054 |
gttttgaatatttctcttcacaaacgataatagttctgtaatataagtgcactttgaaatataagtgctacattatctcatactccagcacattgaaata |
32185153 |
T |
|
| Q |
101 |
acgttatatactactaaattatctacattcaattgatattggaaaattgatgacggaatatgtactattctaattttgtacccactaatactgaagaata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32185154 |
acgttatatactactaaattatctacattcaattgatattggaaaattgaggacggaatatgtactattctaattttgtacccactaatactgaagaata |
32185253 |
T |
|
| Q |
201 |
tcaacaaatgctatagttaatttacttgtctcttctatatgatgttacacccataacaagcagtgaaattctctcatttaannnnnnnggattactttaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |
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| T |
32185254 |
tcaacaaatgctatagttaatttacttgtctcttctatatgatgttacacccataacaagcagtgaaattctctcaattaatttttttggattactttaa |
32185353 |
T |
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| Q |
301 |
attttggagattcattcgagcactaaattttagttttatttgagaataat |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32185354 |
attttggagattcattcgagcactaaattttagttttatttgagaataat |
32185403 |
T |
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