View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16991_high_35 (Length: 329)
Name: NF16991_high_35
Description: NF16991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16991_high_35 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 10 - 312
Target Start/End: Original strand, 47080474 - 47080776
Alignment:
| Q |
10 |
agtgagatgaattactagtaaaatttgaatgaaacagaaaagattgaaagatcagaaacaataaatgagagagtggagcaggcatttggaaaactatgtt |
109 |
Q |
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| T |
47080474 |
agtgaaatgaattactagtaaaatttgaatgaaacagaaaagattgaaagatcagaaacaataaatgagagagtggagcaggcatttggaaaactatgtt |
47080573 |
T |
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| Q |
110 |
tgttaggattcaccggcaggacctgagggagcacacagaatgtgtccggagtgcccctgttgtgtcacagactcaaccttcaattaatgtatacttacag |
209 |
Q |
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| T |
47080574 |
tgttaggattcaccggcaggacctgagggagcacacagaatgtgtccggagtgcccctgttgtgtcacagactcaaccttcaattaatgtatacttacag |
47080673 |
T |
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| Q |
210 |
tacatgttagaaagggtattattgggaattgtactcattattgataccttcattccctatcacaattggtctatttcaatctttaatgcttccttaaatt |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47080674 |
tacatgttagaaagggtattattgggaattgtactcattattgatacattcattccctatcacaattggtctatttcaatctttaatgcttccttaaatt |
47080773 |
T |
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| Q |
310 |
atg |
312 |
Q |
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| T |
47080774 |
atg |
47080776 |
T |
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