View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16991_high_4 (Length: 779)
Name: NF16991_high_4
Description: NF16991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16991_high_4 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 558; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 46 - 741
Target Start/End: Complemental strand, 8175647 - 8174933
Alignment:
| Q |
46 |
ttacaagtaatcacaattcaagtaatagttaaatgtatcgatattttaaaatagtttttaattatatatcatgttcatca---tatgctaagtgaatatt |
142 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
8175647 |
ttacaagtaatcacaattcaagtaatagttaaatgtatcaatattttaaaatagtttttaattatatatcatgttaatcaaagtatgctaagtgaatatt |
8175548 |
T |
|
| Q |
143 |
-gcatatggtcaaaatagatcacttatatgcaaggaagaaactatatctatgactttcattcatatatctcctagtcaattttaagatgtttaacctctc |
241 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
8175547 |
tgcatatggtcaaaatagatcacttatatgcaaggaagaaactatatctatcactttcattcatatatctcctagtcaattttaagatatttaacctctc |
8175448 |
T |
|
| Q |
242 |
tttaatcatcttcatcgattaagatacttcaatttacactttaatttattttaatatatcttcattcattcatatgtattacactttaat---------- |
331 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8175447 |
tttgatcatcttcatcgattaagatacttcaatttacactttaatttattttaatatatcttcattcattcatatgtattacactttaatttattttaat |
8175348 |
T |
|
| Q |
332 |
ataaataaataccttgt-----cacaacatccgagtgcataatataattgtattgtgcttttcggttactctaagataatgatccttaagatactctcct |
426 |
Q |
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|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |
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| T |
8175347 |
ataaataaatactatgtggtgtcacaacatccgagtgcataatataattgtattgtgcttttcagttactctaagataatgatccttaagatactctcat |
8175248 |
T |
|
| Q |
427 |
ctataagatctcattaaattctttatgtttcaaataaattgaaatcaatcaccctttgatttttaggcatgataaatgttattaacattatttttccaac |
526 |
Q |
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|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8175247 |
gtataagatctcattaaatcctttatgtttcaaataaactgaaatcaatcaccctttgatttttaggcatgataaatgttattaacattatttttccaac |
8175148 |
T |
|
| Q |
527 |
actcattctcttaccagatgaaatcaacacgagtcacacactttatagacgagtctcacatttttctctaagttgttcaagcttttcttgggaatatatc |
626 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
8175147 |
actcattctcttaccagatgaaatcaacacgagtcacacactttatagacgagtctcacatttttctctaagtcgttcaagcttttcttgggaatatatc |
8175048 |
T |
|
| Q |
627 |
gtcgattatttcaaggccaaagtgtctggtatttaaacattagctcaagacattttttctatcccttcttaccctgcaaaaacaagggcaccttgtgtgc |
726 |
Q |
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|||| |||||||| || |||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
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| T |
8175047 |
gtcggttatttcagggtcaaagtgtttggtatttgaacattagctcaagacattttctctatcccttcttaccctacaaaaacaagggcaccttgtgtgc |
8174948 |
T |
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| Q |
727 |
ttgaaccgataagta |
741 |
Q |
| |
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||||||||||||||| |
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| T |
8174947 |
ttgaaccgataagta |
8174933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 677 - 738
Target Start/End: Complemental strand, 34659109 - 34659047
Alignment:
| Q |
677 |
cattttttctatcccttcttaccctgcaaaaacaaggg-caccttgtgtgcttgaaccgataa |
738 |
Q |
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|||||| |||| |||||||||||||| ||||||| ||| |||||||||| ||||||||||||| |
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| T |
34659109 |
cattttctctaccccttcttaccctgaaaaaacagggggcaccttgtgttcttgaaccgataa |
34659047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 8176444 - 8176414
Alignment:
| Q |
18 |
atttaagaggtaataatcattttcatcttta |
48 |
Q |
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| T |
8176444 |
atttaagaggtaataatcattttcatcttta |
8176414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 677 - 738
Target Start/End: Original strand, 183406 - 183468
Alignment:
| Q |
677 |
cattttttctatcccttcttaccctgcaaaaacaaggg-caccttgtgtgcttgaaccgataa |
738 |
Q |
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| T |
183406 |
cattttctctaccccttcttaccctgaaaaaacagggggcaccttgtgttcttgaaccgataa |
183468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 677 - 738
Target Start/End: Complemental strand, 494110 - 494048
Alignment:
| Q |
677 |
cattttttctatcccttcttaccctgcaaaaacaaggg-caccttgtgtgcttgaaccgataa |
738 |
Q |
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| T |
494110 |
cattttctctaccccttcttaccctgaaaaaacagggggcaccttgtgttcttgaaccgataa |
494048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 689 - 738
Target Start/End: Complemental strand, 18191759 - 18191709
Alignment:
| Q |
689 |
cccttcttaccctgcaaaaacaaggg-caccttgtgtgcttgaaccgataa |
738 |
Q |
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|||||||||||||| ||||||| ||| |||||||||| ||||||||||||| |
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| T |
18191759 |
cccttcttaccctgaaaaaacagggggcaccttgtgttcttgaaccgataa |
18191709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 677 - 738
Target Start/End: Complemental strand, 14404639 - 14404577
Alignment:
| Q |
677 |
cattttttctatcccttcttaccctgcaaaaacaaggg-caccttgtgtgcttgaaccgataa |
738 |
Q |
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|||||| |||| |||||||||||||| ||||||| ||| |||||||||| ||||||||||||| |
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| T |
14404639 |
cattttctctaccccttcttaccctgaaaaaacagggggcaccttgtgttcttgaaccgataa |
14404577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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