View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16991_high_45 (Length: 256)
Name: NF16991_high_45
Description: NF16991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16991_high_45 |
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Alignment Details
Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 51 - 191
Target Start/End: Original strand, 454724 - 454864
Alignment:
| Q |
51 |
ttttctccatctcttcatattcacaaataagagtcgtattttggaaagtaaagatgggatattgtttagacatggagcactaccttccagtattgggcat |
150 |
Q |
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| T |
454724 |
ttttctccatctcttcatattcacaaataagagtcgtattttggaaagtaaagatgggatattgtttagacatggagtactaccttccagtattggccat |
454823 |
T |
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| Q |
151 |
ggtgttgacacagtttatatattcaggcatgaatctaagta |
191 |
Q |
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| T |
454824 |
ggtgttgacacagtttatatattcaggcatgaatctaagta |
454864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 177
Target Start/End: Original strand, 479411 - 479495
Alignment:
| Q |
90 |
tttggaaagtaaagatgggatattgtttagacatggagcactaccttccagtattgggcatggtgttgacacagtttatatattcagg |
177 |
Q |
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| T |
479411 |
tttggaaagcaaagatgggat---gtttagacatggagtactaccttccaataatggctatggtgttgatagagtttatatatgcagg |
479495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 222 - 256
Target Start/End: Original strand, 454879 - 454913
Alignment:
| Q |
222 |
gagtccaagagtatttatagtttaccgtcatgctt |
256 |
Q |
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| T |
454879 |
gagtccaagagtatttatagtttaccgtcatgctt |
454913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 466578 - 466622
Alignment:
| Q |
205 |
gcacttttggagggtatgagtccaagagtatttatagtttaccgt |
249 |
Q |
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| T |
466578 |
gcacttttggagggtatgagtccaaggatatttgtagtataccgt |
466622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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