View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16991_high_46 (Length: 254)
Name: NF16991_high_46
Description: NF16991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16991_high_46 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 47080474 - 47080222
Alignment:
| Q |
1 |
ttcctcattttaacttatttgtcattttcctaactctcttgtttcaaatgtcattatggagtggacttacttgcatcgaaaagcatgacaaattgttcaa |
100 |
Q |
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| T |
47080474 |
ttcctcattttaacttatttgtcattttcctaactctcttgtttcaaatgtcattatggagtggacttacttgcatcgaaaagcatgacaaattgttcaa |
47080375 |
T |
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| Q |
101 |
cattttttggcatgtttgaaattgccacttccattgtgaaagccaataaacgagtgaagaacctttaatattacaaaaggnnnnnnncaaataacatagt |
200 |
Q |
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| T |
47080374 |
cattttttggcatgtttgaaattgccacttccattgtgaaagccaataaacgagtgaagaacctttaatattacaaaaggaaaaaaacaaataacatagt |
47080275 |
T |
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| Q |
201 |
ttagtttcatagatatgataatgatagtaacagaaaataatgaaaatattctt |
253 |
Q |
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| T |
47080274 |
ttagtttcatagatatgataatgatagtaacagaaaataatgaaaatattctt |
47080222 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 172
Target Start/End: Original strand, 14992831 - 14992923
Alignment:
| Q |
80 |
aaagcatgacaaattgttcaacattttttggcatgtttgaaattgccacttccattgtgaaagccaataaacgagtgaagaacctttaatatt |
172 |
Q |
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| T |
14992831 |
aaagcatgacaaatttttcaacattttttgacatgctcaaaatacccaatcccattgtcaaagtcagtatatgagtgaacaaccttcaatatt |
14992923 |
T |
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