View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16991_high_52 (Length: 249)

Name: NF16991_high_52
Description: NF16991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16991_high_52
NF16991_high_52
[»] chr7 (2 HSPs)
chr7 (1-102)||(28316080-28316181)
chr7 (173-237)||(28316252-28316316)
[»] chr4 (2 HSPs)
chr4 (2-102)||(38406400-38406500)
chr4 (187-232)||(38431410-38431455)
[»] chr1 (1 HSPs)
chr1 (12-52)||(7257114-7257154)
[»] chr6 (1 HSPs)
chr6 (10-56)||(30874182-30874228)
[»] chr8 (1 HSPs)
chr8 (15-63)||(36134292-36134340)
[»] chr3 (1 HSPs)
chr3 (16-72)||(4221645-4221701)


Alignment Details
Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 28316080 - 28316181
Alignment:
Q  1 caataaatctcatttaattcaatggtgagatttattgattcaatagtaaaaataaacttgtgcgtcatgcaaaacatatctcatatgtgcatcataaaat 100  Q
    ||||||||||||||||||| | | |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||    
T  28316080 caataaatctcatttaatttatttgtgagatttattgatttaatagtaaaaataaacttgtgcgtaatgcaaaacatatctcatatatacatcataaaat 28316179  T
Q  101 aa 102  Q
    ||    
T  28316180 aa 28316181  T

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Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 173 - 237
Target Start/End: Original strand, 28316252 - 28316316
Alignment:
Q  173 atgcttaccgtaattaaacatcaaatcaagattatgtgtgattaaaaacctccatcaaacatatt 237  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28316252 atgcttaccataattaaacatcaaatcaagattatgtgtgattaaaaacctccatcaaacatatt 28316316  T

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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 102
Target Start/End: Original strand, 38406400 - 38406500
Alignment:
Q  2 aataaatctcatttaattcaatggtgagatttattgattcaatagtaaaaataaacttgtgcgtcatgcaaaacatatctcatatgtgcatcataaaata 101  Q
    ||||||||| ||||||| ||||| | |||||||||||||||||||||||||  ||||||||  | ||||||||| |||||||  |||||| |||||||||    
T  38406400 aataaatcttatttaatccaatgataagatttattgattcaatagtaaaaacgaacttgtgtataatgcaaaacctatctcacttgtgcaccataaaata 38406499  T
Q  102 a 102  Q
    |    
T  38406500 a 38406500  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 38431410 - 38431455
Alignment:
Q  187 taaacatcaaatcaagattatgtgtgattaaaaacctccatcaaac 232  Q
    |||||||||||| |||||||||| ||||||| ||||||||||||||    
T  38431410 taaacatcaaattaagattatgtatgattaagaacctccatcaaac 38431455  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 7257114 - 7257154
Alignment:
Q  12 atttaattcaatggtgagatttattgattcaatagtaaaaa 52  Q
    |||||||| |||||||||||||||||||||||| |||||||    
T  7257114 atttaatttaatggtgagatttattgattcaatggtaaaaa 7257154  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 30874228 - 30874182
Alignment:
Q  10 tcatttaattcaatggtgagatttattgattcaatagtaaaaataaa 56  Q
    |||||| | |||||||| ||| |||||||||||||||||||||||||    
T  30874228 tcatttgagtcaatggtaagacttattgattcaatagtaaaaataaa 30874182  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 36134292 - 36134340
Alignment:
Q  15 taattcaatggtgagatttattgattcaatagtaaaaataaacttgtgc 63  Q
    |||| ||||| ||||| ||||||||||||| ||||||| ||||||||||    
T  36134292 taatccaatgatgagagttattgattcaatggtaaaaacaaacttgtgc 36134340  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 4221701 - 4221645
Alignment:
Q  16 aattcaatggtgagatttattgattcaatagtaaaaataaacttgtgcgtcatgcaa 72  Q
    |||| ||||||||||||||||||| ||||||| ||||| |  |||||||| ||||||    
T  4221701 aatttaatggtgagatttattgatccaatagtgaaaattagtttgtgcgtgatgcaa 4221645  T

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