View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16991_high_54 (Length: 249)
Name: NF16991_high_54
Description: NF16991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16991_high_54 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 479594 - 479354
Alignment:
| Q |
1 |
acaggagcaagaagaatggttgcaatagcatgacggtacactacaaatatcctagggctcaaactctgcaaaaatacaattcttgtgccaatacccaaac |
100 |
Q |
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| T |
479594 |
acaggagcaagaagaatggttgcaatagcatgacggtacactacaaatatcctagggctcaaaccctgcaaaaatacaattcttgtgccaatacccaaac |
479495 |
T |
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| Q |
101 |
ctgcatatataaactctatcaacaccatagccattattggaaggtagtactccatgtctaaacatcccatctttgctttccaaattacacacgatgctta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
479494 |
ctgcatatataaactctatcaacaccatagccattattggaaggtagtactccatgtctaaacatcccatctttgctttccaaattatacacgatgctta |
479395 |
T |
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| Q |
201 |
tgctgtgtgaagagaataagaaatttattatatatattctt |
241 |
Q |
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| T |
479394 |
tgttgtgtgaagagaagaagaaatttattatatatattctt |
479354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 99 - 184
Target Start/End: Complemental strand, 474022 - 473937
Alignment:
| Q |
99 |
acctgcatatataaactctatcaacaccatagccattattggaaggtagtactccatgtctaaacatcccatctttgctttccaaa |
184 |
Q |
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| T |
474022 |
acctgcatatataaactgtatcaataccataaccattattggcatataatactccatgtctaaacatcccatctttgctttccaaa |
473937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 157
Target Start/End: Complemental strand, 466651 - 466498
Alignment:
| Q |
4 |
ggagcaagaagaatggttgcaatagcatgacggtacactacaaatatcctagggctcaaactctgcaaaaatacaattcttgtgccaatacccaaacctg |
103 |
Q |
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| T |
466651 |
ggagcaagaacaatggttgcaaaagcactacggtatactacaaatatccttggactcataccctccaaaagtgccattcttgtgccaagagtctgacctg |
466552 |
T |
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| Q |
104 |
catatataaactctatcaacaccatagccattattggaaggtagtactccatgt |
157 |
Q |
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| T |
466551 |
caaatattaactgtatcaacaacataactattattggcaggtagtactccatgt |
466498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 100 - 184
Target Start/End: Complemental strand, 454850 - 454763
Alignment:
| Q |
100 |
cctgcatatataaactctatcaacaccatagccattattggaaggtagtactccatgtctaaac---atcccatctttgctttccaaa |
184 |
Q |
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| T |
454850 |
cctgaatatataaactgtgtcaacaccatggccaatactggaaggtagtactccatgtctaaacaatatcccatctttactttccaaa |
454763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 454935 - 454890
Alignment:
| Q |
4 |
ggagcaagaagaatggttgcaatagcatgacggtacactacaaata |
49 |
Q |
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| T |
454935 |
ggagcaagaagaatggttgcaaaagcatgacggtaaactataaata |
454890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 88
Target Start/End: Complemental strand, 445851 - 445767
Alignment:
| Q |
4 |
ggagcaagaagaatggttgcaatagcatgacggtacactacaaatatcctagggctcaaactctgcaaaaatacaattcttgtgc |
88 |
Q |
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| T |
445851 |
ggagcaagaaaaatggttgcaaaagcattacggtacattacaaataccgccgggctcataccctccaaaagtgcaattcttgtgc |
445767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 27493775 - 27493931
Alignment:
| Q |
1 |
acaggagcaagaagaatggttgcaatagcatgacggtacactacaaatatcctagggctcaaactctgcaaaaatacaattcttgtgccaatacccaaac |
100 |
Q |
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||||||||||||| ||||||||||| ||||| || || |||||||||| | | || ||||||| || ||||| |||||||||||| |||| | ||| | |
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| T |
27493775 |
acaggagcaagaaaaatggttgcaaaagcatagcgatatactacaaataccattggactcaaaccctccaaaagtacaattcttgtaccaagagtcaagc |
27493874 |
T |
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| Q |
101 |
ctgcatatataaactctatcaacaccatagccattattggaaggtagtactccatgt |
157 |
Q |
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||| |||||| |||| |||||| | |||| |||||||||| | |||||||||||||| |
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| T |
27493875 |
ctgaatatattaactgtatcaataacataaccattattggtaagtagtactccatgt |
27493931 |
T |
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