View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16991_high_55 (Length: 247)
Name: NF16991_high_55
Description: NF16991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16991_high_55 |
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Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 5726112 - 5725891
Alignment:
| Q |
17 |
acatgtatacctttctatgccacttttggaaagcctctgtatcaactccttagctttctccattgcctcgtaaatgaaacccatggctggttcgtcaatt |
116 |
Q |
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| T |
5726112 |
acatgtatacctttctatgccacttttggaaagcctctgtatcaactccttagctttctccattgcctcgtaaatgaaacccatggctggttcgtcaatt |
5726013 |
T |
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| Q |
117 |
gaactgaccaaacgaagcacttgaaccagaggatttgcacctttataacaaatcataacatctttccaaaactccttgtccaaaaccaaatcctcgacga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5726012 |
gaactgaccaaacgaagcacttgaaccagaggatttgcacctttataacaaatcataacatctttccaaaactccttgtccaaaaccaaatcctcgacga |
5725913 |
T |
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| Q |
217 |
attttccattttttgtctctgc |
238 |
Q |
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|||||||||||||||||||||| |
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| T |
5725912 |
attttccattttttgtctctgc |
5725891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 66 - 220
Target Start/End: Original strand, 4389476 - 4389630
Alignment:
| Q |
66 |
ttagctttctccattgcctcgtaaatgaaacccatggctggttcgtcaattgaactgaccaaacgaagcacttgaaccagaggatttgcacctttataac |
165 |
Q |
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||||||||||||||||| || ||||||||||| |||||||||| ||||||||| ||||||||| |||||| | || |||||||||||||||||| ||| |
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| T |
4389476 |
ttagctttctccattgcttcataaatgaaaccggtggctggttcatcaattgaattgaccaaacaaagcacatcaatcagaggatttgcacctttcaaac |
4389575 |
T |
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| Q |
166 |
aaatcataacatctttccaaaactccttgtccaaaaccaaatcctcgacgaattt |
220 |
Q |
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| T |
4389576 |
aaatcataacatttttccaaaactccttgtccaaaaccacatcctcaacaaattt |
4389630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 66 - 220
Target Start/End: Original strand, 4376791 - 4376945
Alignment:
| Q |
66 |
ttagctttctccattgcctcgtaaatgaaacccatggctggttcgtcaattgaactgaccaaacgaagcacttgaaccagaggatttgcacctttataac |
165 |
Q |
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| T |
4376791 |
ttagctttctccattgcttcataaatgaaaccagtggctggttcatcgattgtattgaccaaacgaagcacatcaagcagaggatttgcgccgttcaaac |
4376890 |
T |
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| Q |
166 |
aaatcataacatctttccaaaactccttgtccaaaaccaaatcctcgacgaattt |
220 |
Q |
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|||||||||||| |||||||||||||||||||||||||| |||||| || ||||| |
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| T |
4376891 |
aaatcataacatttttccaaaactccttgtccaaaaccacatcctcaacaaattt |
4376945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 66 - 211
Target Start/End: Original strand, 4384364 - 4384509
Alignment:
| Q |
66 |
ttagctttctccattgcctcgtaaatgaaacccatggctggttcgtcaattgaactgaccaaacgaagcacttgaaccagaggatttgcacctttataac |
165 |
Q |
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||||||||||||||||| || ||||||||||| |||||||||| || |||||| |||||||||||||||| | || |||||||||||| || || ||| |
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| T |
4384364 |
ttagctttctccattgcttcataaatgaaaccggtggctggttcatcgattgaattgaccaaacgaagcacatcaagcagaggatttgcgccgttcaaac |
4384463 |
T |
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| Q |
166 |
aaatcataacatctttccaaaactccttgtccaaaaccaaatcctc |
211 |
Q |
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|| || |||||| |||||| ||||||||||||||||||| |||||| |
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| T |
4384464 |
aattcgtaacatttttccagaactccttgtccaaaaccacatcctc |
4384509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 24 - 226
Target Start/End: Complemental strand, 4415123 - 4414918
Alignment:
| Q |
24 |
tacctttctatgccacttttggaaagcctct---gtatcaactccttagctttctccattgcctcgtaaatgaaacccatggctggttcgtcaattgaac |
120 |
Q |
| |
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|||||||||||| ||| ||||||||| ||| ||||| ||| ||||||| ||||| |||||| |||||| |||| ||||||| || || ||||||| |
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| T |
4415123 |
tacctttctatgacacctttggaaagactccttcgtatctcctctttagcttgctccaatgcctcataaatggaaccggtggctggctcatctattgaac |
4415024 |
T |
|
| Q |
121 |
tgaccaaacgaagcacttgaaccagaggatttgcacctttataacaaatcataacatctttccaaaactccttgtccaaaaccaaatcctcgacgaattt |
220 |
Q |
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||||||||| |||||||| |||||| |||| ||||| |||| |||||||||| || | || ||||||| | |||||||||||| |||||||||| |||| |
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| T |
4415023 |
tgaccaaacaaagcacttcaaccaggggatgtgcacttttaaaacaaatcatgacgttttcccaaaaccctgtgtccaaaaccacatcctcgacgtattt |
4414924 |
T |
|
| Q |
221 |
tccatt |
226 |
Q |
| |
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||||| |
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| T |
4414923 |
cccatt |
4414918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 67 - 203
Target Start/End: Original strand, 4359843 - 4359979
Alignment:
| Q |
67 |
tagctttctccattgcctcgtaaatgaaacccatggctggttcgtcaattgaactgaccaaacgaagcacttgaaccagaggatttgcacctttataaca |
166 |
Q |
| |
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|||||||| |||||||||| |||||||||||||| | ||||| || |||||| || ||||||||| ||||| || | ||||| | |||||||||||| |
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| T |
4359843 |
tagctttcaccattgcctcataaatgaaacccatagttggtttctcgattgaattggccaaacgaaacacttcaagtataggatatatacctttataaca |
4359942 |
T |
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| Q |
167 |
aatcataacatctttccaaaactccttgtccaaaacc |
203 |
Q |
| |
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||||||||||| |||||||||| | |||| ||||||| |
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| T |
4359943 |
aatcataacatttttccaaaaccctttgttcaaaacc |
4359979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 143 - 211
Target Start/End: Original strand, 4365312 - 4365380
Alignment:
| Q |
143 |
cagaggatttgcacctttataacaaatcataacatctttccaaaactccttgtccaaaaccaaatcctc |
211 |
Q |
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|||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||| || |||||| |
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| T |
4365312 |
cagaggttttacacctttataacaaatcataacatatttccaaaactccttgtccaaaatcatatcctc |
4365380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 143 - 211
Target Start/End: Original strand, 4369706 - 4369774
Alignment:
| Q |
143 |
cagaggatttgcacctttataacaaatcataacatctttccaaaactccttgtccaaaaccaaatcctc |
211 |
Q |
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|||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||| || |||||| |
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| T |
4369706 |
cagaggttttacacctttataacaaatcataacatatttccaaaactccttgtccaaaatcatatcctc |
4369774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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