View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16991_low_10 (Length: 557)
Name: NF16991_low_10
Description: NF16991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16991_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 14 - 291
Target Start/End: Complemental strand, 38689328 - 38689051
Alignment:
| Q |
14 |
agaatatgttaggccagatcgactaagagagttattttctcgtaaaggagaaatcactgatgtcaaacttatgcataacatcaggtacctacctcctcaa |
113 |
Q |
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| T |
38689328 |
agaatatgttaggccagatcgactaagagagttattttctcgtaaaggagaaatcattgatgtcaaacttatgcataacatcaggtacctacctcctcaa |
38689229 |
T |
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| Q |
114 |
atcatacctaaccctagctagctatcccacttttaatttacttgttttgtgttgataatttcattgtctaaactcagattcagcctatttgctttcattg |
213 |
Q |
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| T |
38689228 |
atcatacctaaccctagctagctatcccacttttaatttacttgttttgtgttgataatttcattgtctaaactcagattcagcctatttgctttcattg |
38689129 |
T |
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| Q |
214 |
aatttcgaacggaccatgaagctcaggaacctgttcaatgtttcaacagaacttacattgacacatctatgattactt |
291 |
Q |
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| T |
38689128 |
aatttggaacggaccatgaagctcaggaagctgttcaatgtttcaacagaacttacattgacacatctatgattactt |
38689051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 316 - 542
Target Start/End: Complemental strand, 38689056 - 38688835
Alignment:
| Q |
316 |
ttactttcatgtaatgatttaatattttattactcaacttcaaaccactctaatctattattatgttctcagctggtgcctttggatttcgattatggtc |
415 |
Q |
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| T |
38689056 |
ttactttcatgtaatgatttaatattttattactcaaactcaaaccactcta-----ttattatgttctcagctggtgcctttggatttcgattatggtc |
38688962 |
T |
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| Q |
416 |
ctgcaaataatgacttcgcccaagaattcactgttacaccggttataataccaccagagtctcttgttattaaaaagagaacagtttttgatccctgtcg |
515 |
Q |
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| T |
38688961 |
ctgcaaataatgacttcgcctaagaattcactgttacaccagttataataccaccagagtctcttgttattaaaaagagaacagtttttgatccctgtcg |
38688862 |
T |
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| Q |
516 |
actctttattttttacgtgccatcatc |
542 |
Q |
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| T |
38688861 |
actctttatcttttacgtgccatcatc |
38688835 |
T |
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